Wall clock time and date at job start Mon Mar 30 2020 01:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86800 * 120.00105 * 2 1 4 4 H 1.48501 * 109.47483 * 270.00407 * 3 2 1 5 5 H 1.48498 * 109.47011 * 30.00271 * 3 2 1 6 6 H 1.48502 * 109.47495 * 149.99894 * 3 2 1 7 7 C 1.38811 * 120.00081 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00195 * 0.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 180.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 C 1.50700 * 109.46769 * 179.72432 * 10 9 7 12 12 C 1.35352 * 126.75361 * 94.71485 * 11 10 9 13 13 N 1.35317 * 106.17693 * 179.84844 * 12 11 10 14 14 C 1.46491 * 125.87029 * 180.18381 * 13 12 11 15 15 C 1.50703 * 109.47207 * 125.29585 * 14 13 12 16 16 C 1.38238 * 119.97075 * 269.72701 * 15 14 13 17 17 C 1.38201 * 120.02614 * 179.72810 * 16 15 14 18 18 C 1.38463 * 119.96978 * 0.56488 * 17 16 15 19 19 F 1.35102 * 120.02652 * 179.68436 * 18 17 16 20 20 C 1.38463 * 119.94793 * 359.70773 * 18 17 16 21 21 C 1.38196 * 119.97445 * 0.02562 * 20 18 17 22 22 N 1.28721 * 108.25949 * 0.41126 * 13 12 11 23 23 N 1.28636 * 110.17920 * 359.73997 * 22 13 12 24 24 H 0.97008 * 120.00329 * 359.97438 * 1 2 3 25 25 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 26 26 H 1.09004 * 109.46963 * 299.72226 * 10 9 7 27 27 H 1.08994 * 109.47567 * 59.72378 * 10 9 7 28 28 H 1.08002 * 126.90994 * 359.97438 * 12 11 10 29 29 H 1.08997 * 109.47170 * 245.29472 * 14 13 12 30 30 H 1.08999 * 109.46977 * 5.29533 * 14 13 12 31 31 H 1.08009 * 119.99207 * 359.97438 * 16 15 14 32 32 H 1.07995 * 120.01687 * 180.25070 * 17 16 15 33 33 H 1.08002 * 120.00838 * 179.97438 * 20 18 17 34 34 H 1.07998 * 119.98670 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1375 -0.0014 9 7 3.3796 -1.2021 0.0000 10 6 4.1121 -2.4708 -0.0067 11 6 5.5937 -2.1954 -0.0115 12 6 6.4103 -2.1384 1.0664 13 7 7.6475 -1.8703 0.5883 14 6 8.8639 -1.7201 1.3907 15 6 9.9215 -2.6652 0.8815 16 6 10.0174 -3.9411 1.4050 17 6 10.9832 -4.8106 0.9349 18 6 11.8625 -4.3995 -0.0525 19 9 12.8112 -5.2465 -0.5084 20 6 11.7690 -3.1195 -0.5721 21 6 10.7988 -2.2536 -0.1043 22 7 7.5709 -1.7651 -0.6923 23 7 6.3594 -1.9536 -1.0814 24 1 -0.4851 0.8401 0.0004 25 1 3.8646 -0.3620 0.0004 26 1 3.8521 -3.0451 0.8825 27 1 3.8454 -3.0397 -0.8974 28 1 6.1310 -2.2805 2.1000 29 1 9.2255 -0.6947 1.3139 30 1 8.6423 -1.9501 2.4329 31 1 9.3347 -4.2598 2.1789 32 1 11.0554 -5.8087 1.3411 33 1 12.4546 -2.7977 -1.3421 34 1 10.7255 -1.2553 -0.5097 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594640612.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:42 Heat of formation + Delta-G solvation = 99.001405 kcal Electronic energy + Delta-G solvation = -19752.608360 eV Core-core repulsion = 16410.001056 eV Total energy + Delta-G solvation = -3342.607305 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.108 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.31784 -43.07620 -39.61867 -35.54715 -34.53883 -31.93882 -31.63823 -31.36571 -30.26090 -27.09786 -26.09631 -23.58186 -22.75851 -22.38175 -21.52625 -20.56800 -18.17420 -17.87844 -17.09550 -16.98380 -16.58657 -15.98867 -15.52237 -14.74604 -14.58472 -14.42725 -14.17026 -14.05396 -13.92726 -13.18091 -12.84130 -12.74022 -12.66022 -12.42511 -12.06759 -11.52475 -11.49426 -11.08999 -10.86523 -10.54513 -10.16133 -9.95087 -9.58292 -9.57811 -9.18704 -8.97861 -8.88338 -7.22126 -5.74772 -3.10344 0.49907 0.76533 1.73070 2.36604 2.79185 3.19403 3.40307 3.45550 3.48413 3.77977 3.93247 4.12166 4.38511 4.41618 4.62299 4.62836 4.72141 4.86150 4.96696 5.16042 5.37100 5.40441 5.43298 5.57148 5.63577 5.69622 5.73592 5.74883 5.94328 6.28634 6.37096 6.57895 6.64444 6.70125 7.99993 8.43986 8.73688 9.22211 9.94779 10.14970 11.43404 Molecular weight = 276.11amu Principal moments of inertia in cm(-1) A = 0.043379 B = 0.003194 C = 0.003124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.315586 B = 8764.240938 C = 8961.231052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.006 3.994 3 Si 0.885 3.115 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.243 4.243 8 H 0.093 0.907 9 N -0.750 5.750 10 C 0.238 3.762 11 C -0.012 4.012 12 C -0.044 4.044 13 N -0.298 5.298 14 C 0.162 3.838 15 C -0.126 4.126 16 C -0.067 4.067 17 C -0.158 4.158 18 C 0.111 3.889 19 F -0.138 7.138 20 C -0.156 4.156 21 C -0.051 4.051 22 N -0.089 5.089 23 N -0.256 5.256 24 H 0.260 0.740 25 H 0.362 0.638 26 H 0.046 0.954 27 H 0.047 0.953 28 H 0.191 0.809 29 H 0.107 0.893 30 H 0.116 0.884 31 H 0.135 0.865 32 H 0.139 0.861 33 H 0.140 0.860 34 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.652 -7.196 6.403 28.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.189 4.189 3 Si 0.715 3.285 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.373 4.373 8 H 0.111 0.889 9 N -0.396 5.396 10 C 0.109 3.891 11 C -0.150 4.150 12 C -0.194 4.194 13 N -0.092 5.092 14 C 0.041 3.959 15 C -0.127 4.127 16 C -0.085 4.085 17 C -0.177 4.177 18 C 0.091 3.909 19 F -0.117 7.117 20 C -0.175 4.175 21 C -0.070 4.070 22 N -0.069 5.069 23 N -0.123 5.123 24 H 0.070 0.930 25 H 0.195 0.805 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.208 0.792 29 H 0.126 0.874 30 H 0.134 0.866 31 H 0.153 0.847 32 H 0.156 0.844 33 H 0.157 0.843 34 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 27.233 -7.039 5.101 28.587 hybrid contribution 0.291 0.893 0.993 1.367 sum 27.525 -6.146 6.094 28.853 Atomic orbital electron populations 1.69696 1.05039 1.25830 1.57553 1.24631 0.95196 0.97142 1.01964 0.86544 0.79002 0.85014 0.77932 1.20963 1.21728 1.20602 1.19048 0.80237 0.94902 1.43096 0.88890 1.42661 1.03910 1.01818 1.91197 1.18907 0.80274 0.89829 1.00066 1.22529 0.99017 1.04933 0.88530 1.23473 0.84285 1.09545 1.02130 1.47352 1.08234 1.46831 1.06823 1.20834 0.80249 1.00567 0.94265 1.19749 0.97866 0.95441 0.99676 1.20942 0.96708 0.92075 0.98793 1.21135 0.96645 1.01495 0.98382 1.17821 0.88656 0.88453 0.95942 1.91519 1.62156 1.70147 1.87829 1.21183 1.01329 0.92600 1.02361 1.20968 0.92317 1.00045 0.93667 1.78251 1.16109 1.19930 0.92574 1.75119 0.95959 1.14962 1.26269 0.93034 0.80501 0.93643 0.93509 0.79243 0.87450 0.86629 0.84679 0.84352 0.84262 0.84357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.52 13.97 55.49 0.78 -28.75 16 2 C 0.01 0.19 5.50 -17.43 -0.10 0.10 16 3 Si 0.88 22.75 27.74 -169.99 -4.71 18.03 16 4 H -0.28 -7.35 7.11 56.52 0.40 -6.94 16 5 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 6 H -0.28 -6.83 6.52 56.52 0.37 -6.46 16 7 C -0.24 -6.97 10.47 -15.06 -0.16 -7.12 16 8 H 0.09 2.80 8.06 -52.49 -0.42 2.37 16 9 N -0.75 -18.47 5.40 -61.09 -0.33 -18.80 16 10 C 0.24 4.78 6.82 -5.19 -0.04 4.74 16 11 C -0.01 -0.22 6.61 -82.78 -0.55 -0.77 16 12 C -0.04 -0.60 11.50 -17.04 -0.20 -0.79 16 13 N -0.30 -3.74 3.43 -62.45 -0.21 -3.95 16 14 C 0.16 1.19 6.58 -5.20 -0.03 1.16 16 15 C -0.13 -0.99 5.25 -104.62 -0.55 -1.54 16 16 C -0.07 -0.48 9.70 -39.60 -0.38 -0.87 16 17 C -0.16 -1.22 10.03 -39.51 -0.40 -1.62 16 18 C 0.11 0.98 7.30 -39.42 -0.29 0.69 16 19 F -0.14 -1.34 17.27 2.25 0.04 -1.30 16 20 C -0.16 -1.27 10.03 -39.51 -0.40 -1.66 16 21 C -0.05 -0.41 9.70 -39.60 -0.38 -0.80 16 22 N -0.09 -1.46 12.92 60.35 0.78 -0.68 16 23 N -0.26 -4.94 12.41 33.29 0.41 -4.53 16 24 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 25 H 0.36 9.00 5.52 -40.82 -0.23 8.77 16 26 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 27 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.19 1.86 8.06 -52.49 -0.42 1.44 16 29 H 0.11 0.63 8.08 -51.93 -0.42 0.21 16 30 H 0.12 0.48 8.01 -51.93 -0.42 0.07 16 31 H 0.14 0.70 8.06 -52.48 -0.42 0.28 16 32 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 33 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 34 H 0.14 0.96 8.06 -52.49 -0.42 0.53 16 LS Contribution 307.91 15.07 4.64 4.64 Total: -1.00 -35.59 307.91 -5.69 -41.28 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -3.61 Total: 2.54 kcal Atomic # 6 Polarization: -5.01 SS G_CDS: -3.46 Total: -8.48 kcal Atomic # 7 Polarization: -58.14 SS G_CDS: 1.42 Total: -56.71 kcal Atomic # 9 Polarization: -1.34 SS G_CDS: 0.04 Total: -1.30 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -4.71 Total: 18.03 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -35.59 -5.69 -41.28 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594640612.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.282 kcal (2) G-P(sol) polarization free energy of solvation -35.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds