Wall clock time and date at job start Mon Mar 30 2020 01:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86800 * 120.00105 * 2 1 4 4 H 1.48501 * 109.47483 * 270.00407 * 3 2 1 5 5 H 1.48498 * 109.47011 * 30.00271 * 3 2 1 6 6 H 1.48502 * 109.47495 * 149.99894 * 3 2 1 7 7 C 1.38811 * 120.00081 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00195 * 0.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 180.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 C 1.50700 * 109.46769 * 179.72432 * 10 9 7 12 12 C 1.35352 * 126.75361 * 94.71485 * 11 10 9 13 13 N 1.35317 * 106.17693 * 179.84844 * 12 11 10 14 14 C 1.46491 * 125.87029 * 180.18381 * 13 12 11 15 15 C 1.50703 * 109.47207 * 125.29585 * 14 13 12 16 16 C 1.38238 * 119.97075 * 269.72701 * 15 14 13 17 17 C 1.38201 * 120.02614 * 179.72810 * 16 15 14 18 18 C 1.38463 * 119.96978 * 0.56488 * 17 16 15 19 19 F 1.35102 * 120.02652 * 179.68436 * 18 17 16 20 20 C 1.38463 * 119.94793 * 359.70773 * 18 17 16 21 21 C 1.38196 * 119.97445 * 0.02562 * 20 18 17 22 22 N 1.28721 * 108.25949 * 0.41126 * 13 12 11 23 23 N 1.28636 * 110.17920 * 359.73997 * 22 13 12 24 24 H 0.97008 * 120.00329 * 359.97438 * 1 2 3 25 25 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 26 26 H 1.09004 * 109.46963 * 299.72226 * 10 9 7 27 27 H 1.08994 * 109.47567 * 59.72378 * 10 9 7 28 28 H 1.08002 * 126.90994 * 359.97438 * 12 11 10 29 29 H 1.08997 * 109.47170 * 245.29472 * 14 13 12 30 30 H 1.08999 * 109.46977 * 5.29533 * 14 13 12 31 31 H 1.08009 * 119.99207 * 359.97438 * 16 15 14 32 32 H 1.07995 * 120.01687 * 180.25070 * 17 16 15 33 33 H 1.08002 * 120.00838 * 179.97438 * 20 18 17 34 34 H 1.07998 * 119.98670 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1375 -0.0014 9 7 3.3796 -1.2021 0.0000 10 6 4.1121 -2.4708 -0.0067 11 6 5.5937 -2.1954 -0.0115 12 6 6.4103 -2.1384 1.0664 13 7 7.6475 -1.8703 0.5883 14 6 8.8639 -1.7201 1.3907 15 6 9.9215 -2.6652 0.8815 16 6 10.0174 -3.9411 1.4050 17 6 10.9832 -4.8106 0.9349 18 6 11.8625 -4.3995 -0.0525 19 9 12.8112 -5.2465 -0.5084 20 6 11.7690 -3.1195 -0.5721 21 6 10.7988 -2.2536 -0.1043 22 7 7.5709 -1.7651 -0.6923 23 7 6.3594 -1.9536 -1.0814 24 1 -0.4851 0.8401 0.0004 25 1 3.8646 -0.3620 0.0004 26 1 3.8521 -3.0451 0.8825 27 1 3.8454 -3.0397 -0.8974 28 1 6.1310 -2.2805 2.1000 29 1 9.2255 -0.6947 1.3139 30 1 8.6423 -1.9501 2.4329 31 1 9.3347 -4.2598 2.1789 32 1 11.0554 -5.8087 1.3411 33 1 12.4546 -2.7977 -1.3421 34 1 10.7255 -1.2553 -0.5097 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594640612.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:42 Heat of formation + Delta-G solvation = 74.722284 kcal Electronic energy + Delta-G solvation = -19753.661182 eV Core-core repulsion = 16410.001056 eV Total energy + Delta-G solvation = -3343.660127 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.108 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.99977 -44.19840 -40.19989 -37.07472 -35.78764 -33.81028 -32.22208 -32.17173 -31.86034 -28.02209 -27.58300 -24.39817 -24.09285 -23.52912 -22.61473 -21.70299 -19.86645 -18.76565 -18.15448 -17.78143 -17.32247 -16.68944 -16.62073 -16.22422 -15.89543 -15.77130 -15.07741 -14.99305 -14.68401 -14.52824 -14.36587 -13.95414 -13.55079 -13.42878 -13.20752 -12.93395 -12.89019 -12.48687 -12.10626 -12.05046 -11.81272 -11.75608 -11.03969 -10.99836 -10.19173 -10.13960 -9.79163 -9.30633 -8.01494 -5.34828 -0.12212 0.20652 0.68194 1.35889 1.41569 1.45536 1.50729 1.56908 2.48800 2.59038 3.18352 3.29384 3.30846 3.50569 3.62346 3.85093 3.88561 3.90298 4.05958 4.18863 4.28794 4.33975 4.44067 4.63421 4.85690 4.87664 4.90581 5.07573 5.13707 5.15756 5.19092 5.37933 5.70936 5.76678 5.80617 6.22154 7.07001 7.56298 7.82118 8.01985 9.19756 Molecular weight = 276.11amu Principal moments of inertia in cm(-1) A = 0.043379 B = 0.003194 C = 0.003124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.315586 B = 8764.240938 C = 8961.231052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.981 5.981 2 C -0.059 4.059 3 Si 0.952 3.048 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.256 1.256 7 C -0.231 4.231 8 H 0.066 0.934 9 N -0.753 5.753 10 C 0.239 3.761 11 C -0.048 4.048 12 C -0.014 4.014 13 N -0.282 5.282 14 C 0.151 3.849 15 C -0.132 4.132 16 C -0.066 4.066 17 C -0.164 4.164 18 C 0.090 3.910 19 F -0.148 7.148 20 C -0.166 4.166 21 C -0.061 4.061 22 N -0.105 5.105 23 N -0.303 5.303 24 H 0.259 0.741 25 H 0.363 0.637 26 H 0.068 0.932 27 H 0.030 0.970 28 H 0.235 0.765 29 H 0.126 0.874 30 H 0.159 0.841 31 H 0.161 0.839 32 H 0.153 0.847 33 H 0.148 0.852 34 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.707 -6.707 8.501 30.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.631 5.631 2 C -0.251 4.251 3 Si 0.780 3.220 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.181 1.181 7 C -0.362 4.362 8 H 0.084 0.916 9 N -0.398 5.398 10 C 0.112 3.888 11 C -0.186 4.186 12 C -0.166 4.166 13 N -0.076 5.076 14 C 0.033 3.967 15 C -0.133 4.133 16 C -0.084 4.084 17 C -0.183 4.183 18 C 0.070 3.930 19 F -0.127 7.127 20 C -0.184 4.184 21 C -0.079 4.079 22 N -0.084 5.084 23 N -0.170 5.170 24 H 0.067 0.933 25 H 0.195 0.805 26 H 0.086 0.914 27 H 0.048 0.952 28 H 0.251 0.749 29 H 0.144 0.856 30 H 0.177 0.823 31 H 0.179 0.821 32 H 0.170 0.830 33 H 0.166 0.834 34 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 29.369 -6.575 7.201 30.946 hybrid contribution -0.248 0.614 0.367 0.757 sum 29.121 -5.961 7.568 30.673 Atomic orbital electron populations 1.69860 1.06894 1.26649 1.59740 1.25404 0.96037 1.00909 1.02760 0.85454 0.78588 0.80271 0.77692 1.21465 1.21616 1.18064 1.19063 0.82163 0.93862 1.41088 0.91558 1.42688 1.02520 1.03631 1.90995 1.18895 0.81978 0.87821 1.00095 1.22243 0.98102 1.08229 0.90043 1.23956 0.83619 1.06172 1.02804 1.47756 1.09483 1.44304 1.06018 1.21425 0.78175 1.01636 0.95467 1.19887 0.97908 0.95895 0.99631 1.21265 0.96591 0.91595 0.98974 1.21398 0.96442 1.02431 0.98005 1.18118 0.89166 0.88795 0.96896 1.91489 1.62661 1.70477 1.88089 1.21361 1.01781 0.92573 1.02714 1.21171 0.92429 1.00419 0.93902 1.78156 1.14981 1.20715 0.94571 1.75055 0.97233 1.16714 1.28018 0.93256 0.80471 0.91374 0.95246 0.74882 0.85605 0.82321 0.82099 0.82958 0.83446 0.83646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.12 13.97 21.65 0.30 -62.81 16 2 C -0.06 -3.54 5.50 84.86 0.47 -3.08 16 3 Si 0.95 46.72 27.74 68.60 1.90 48.62 16 4 H -0.29 -14.25 7.11 99.48 0.71 -13.55 16 5 H -0.29 -14.06 7.11 99.48 0.71 -13.36 16 6 H -0.26 -11.41 6.52 99.48 0.65 -10.76 16 7 C -0.23 -13.29 10.47 84.03 0.88 -12.41 16 8 H 0.07 4.09 8.06 -2.91 -0.02 4.07 16 9 N -0.75 -36.27 5.40 -347.18 -1.87 -38.15 16 10 C 0.24 9.36 6.82 85.63 0.58 9.95 16 11 C -0.05 -1.60 6.61 41.60 0.28 -1.33 16 12 C -0.01 -0.32 11.50 83.49 0.96 0.65 16 13 N -0.28 -5.96 3.43 -351.48 -1.21 -7.16 16 14 C 0.15 1.50 6.58 85.64 0.56 2.06 16 15 C -0.13 -1.64 5.25 -19.86 -0.10 -1.74 16 16 C -0.07 -0.73 9.70 22.26 0.22 -0.52 16 17 C -0.16 -2.22 10.03 22.31 0.22 -1.99 16 18 C 0.09 1.51 7.30 22.38 0.16 1.67 16 19 F -0.15 -2.85 17.27 44.97 0.78 -2.07 16 20 C -0.17 -2.53 10.03 22.31 0.22 -2.31 16 21 C -0.06 -0.85 9.70 22.26 0.22 -0.64 16 22 N -0.11 -3.22 12.92 37.02 0.48 -2.74 16 23 N -0.30 -11.39 12.41 -48.60 -0.60 -12.00 16 24 H 0.26 15.83 8.31 -92.70 -0.77 15.05 16 25 H 0.36 17.30 5.52 -92.71 -0.51 16.79 16 26 H 0.07 2.36 8.14 -2.38 -0.02 2.34 16 27 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.23 3.07 8.06 -2.91 -0.02 3.05 16 29 H 0.13 0.89 8.08 -2.39 -0.02 0.87 16 30 H 0.16 0.26 8.01 -2.39 -0.02 0.24 16 31 H 0.16 0.90 8.06 -2.91 -0.02 0.88 16 32 H 0.15 1.52 8.06 -2.91 -0.02 1.49 16 33 H 0.15 1.84 8.06 -2.91 -0.02 1.82 16 34 H 0.15 1.75 8.06 -2.91 -0.02 1.72 16 Total: -1.00 -79.12 307.91 5.01 -74.12 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: 0.56 Total: 11.88 kcal Atomic # 6 Polarization: -14.36 SS G_CDS: 4.67 Total: -9.69 kcal Atomic # 7 Polarization: -119.95 SS G_CDS: -2.90 Total: -122.86 kcal Atomic # 9 Polarization: -2.85 SS G_CDS: 0.78 Total: -2.07 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 1.90 Total: 48.62 kcal Total: -79.12 5.01 -74.12 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594640612.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.837 kcal (2) G-P(sol) polarization free energy of solvation -79.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds