Wall clock time and date at job start Mon Mar 30 2020 01:42:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00313 * 3 2 1 5 5 H 1.48494 * 109.46800 * 30.00360 * 3 2 1 6 6 H 1.48504 * 109.46913 * 150.00063 * 3 2 1 7 7 C 1.38817 * 119.99892 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99438 * 0.26604 * 7 2 1 9 9 N 1.36935 * 119.99990 * 179.97438 * 7 2 1 10 10 C 1.46499 * 119.99938 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47276 * 180.02562 * 10 9 7 12 12 C 1.35339 * 126.75399 * 94.99868 * 11 10 9 13 13 N 1.35320 * 106.17716 * 180.02562 * 12 11 10 14 14 C 1.46500 * 125.86726 * 179.97438 * 13 12 11 15 15 C 1.50695 * 109.47057 * 124.99774 * 14 13 12 16 16 C 1.38271 * 119.98477 * 89.99767 * 15 14 13 17 17 C 1.38230 * 120.05100 * 179.97438 * 16 15 14 18 18 C 1.38218 * 120.02355 * 0.02562 * 17 16 15 19 19 C 1.38437 * 119.97613 * 0.02562 * 18 17 16 20 20 F 1.35098 * 120.02698 * 179.97438 * 19 18 17 21 21 C 1.38177 * 119.99107 * 269.72128 * 15 14 13 22 22 N 1.28716 * 108.26162 * 359.97438 * 13 12 11 23 23 N 1.28641 * 110.17681 * 359.72203 * 22 13 12 24 24 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 25 25 H 0.96999 * 120.00077 * 359.97438 * 9 7 2 26 26 H 1.09004 * 109.47024 * 300.00223 * 10 9 7 27 27 H 1.09005 * 109.47136 * 59.99839 * 10 9 7 28 28 H 1.08003 * 126.91293 * 0.03763 * 12 11 10 29 29 H 1.08995 * 109.46760 * 244.99904 * 14 13 12 30 30 H 1.08997 * 109.47437 * 4.99908 * 14 13 12 31 31 H 1.07999 * 119.97680 * 359.97438 * 16 15 14 32 32 H 1.07998 * 119.98610 * 180.02562 * 17 16 15 33 33 H 1.08006 * 120.01309 * 180.02562 * 18 17 16 34 34 H 1.08002 * 120.00990 * 359.97438 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 1.4701 -2.1374 -0.0053 9 7 3.3796 -1.2022 -0.0011 10 6 4.1120 -2.4710 -0.0011 11 6 5.5936 -2.1957 -0.0011 12 6 6.4071 -2.1406 1.0792 13 7 7.6450 -1.8679 0.6054 14 6 8.8580 -1.7135 1.4122 15 6 9.9184 -2.6598 0.9111 16 6 10.7993 -2.2518 -0.0734 17 6 11.7728 -3.1185 -0.5337 18 6 11.8662 -4.3944 -0.0105 19 6 10.9841 -4.8044 0.9745 20 9 11.0741 -6.0514 1.4863 21 6 10.0135 -3.9330 1.4396 22 7 7.5734 -1.7674 -0.6758 23 7 6.3646 -1.9637 -1.0695 24 1 -0.4850 0.8401 0.0004 25 1 3.8646 -0.3622 -0.0014 26 1 3.8490 -3.0424 0.8892 27 1 3.8483 -3.0428 -0.8908 28 1 6.1251 -2.2855 2.1116 29 1 9.2191 -0.6882 1.3327 30 1 8.6326 -1.9395 2.4543 31 1 10.7268 -1.2552 -0.4832 32 1 12.4606 -2.7986 -1.3024 33 1 12.6272 -5.0714 -0.3700 34 1 9.3284 -4.2497 2.2121 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594640841.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:44 Heat of formation + Delta-G solvation = 99.398749 kcal Electronic energy + Delta-G solvation = -19826.048213 eV Core-core repulsion = 16483.458138 eV Total energy + Delta-G solvation = -3342.590075 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.108 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.27888 -43.08501 -39.60799 -35.58929 -34.59439 -32.01019 -31.68090 -30.99560 -30.26217 -27.43586 -26.10313 -23.31821 -22.84182 -22.39103 -21.54580 -20.59749 -18.12739 -17.68374 -17.05818 -16.79963 -16.64608 -16.10688 -15.95554 -14.74359 -14.64503 -14.51361 -14.16337 -13.93640 -13.70388 -13.19070 -12.82903 -12.75020 -12.62152 -12.24453 -12.09528 -11.69301 -11.47660 -11.09337 -10.86358 -10.55334 -10.16175 -9.96360 -9.57987 -9.57093 -9.16915 -8.98557 -8.88167 -7.21928 -5.74552 -3.10096 0.52493 0.72671 1.72199 2.36468 2.78776 3.19497 3.40450 3.45668 3.48458 3.64897 4.02078 4.11965 4.43610 4.52767 4.62202 4.62607 4.68168 4.79759 4.93562 5.15664 5.25885 5.37549 5.54913 5.57095 5.60539 5.69631 5.75107 5.80521 5.93593 6.28373 6.38265 6.58070 6.63514 6.69826 8.00257 8.44260 8.72769 9.22440 9.94973 10.15235 11.43652 Molecular weight = 276.11amu Principal moments of inertia in cm(-1) A = 0.037192 B = 0.003372 C = 0.003238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.665623 B = 8300.828015 C = 8644.445129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.007 3.993 3 Si 0.885 3.115 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.243 4.243 8 H 0.093 0.907 9 N -0.750 5.750 10 C 0.238 3.762 11 C -0.012 4.012 12 C -0.043 4.043 13 N -0.299 5.299 14 C 0.160 3.840 15 C -0.086 4.086 16 C -0.091 4.091 17 C -0.092 4.092 18 C -0.142 4.142 19 C 0.095 3.905 20 F -0.138 7.138 21 C -0.131 4.131 22 N -0.089 5.089 23 N -0.255 5.255 24 H 0.260 0.740 25 H 0.362 0.638 26 H 0.046 0.954 27 H 0.047 0.953 28 H 0.191 0.809 29 H 0.110 0.890 30 H 0.116 0.884 31 H 0.136 0.864 32 H 0.138 0.862 33 H 0.137 0.863 34 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.473 -6.713 5.467 28.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.189 4.189 3 Si 0.715 3.285 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.373 4.373 8 H 0.111 0.889 9 N -0.396 5.396 10 C 0.109 3.891 11 C -0.149 4.149 12 C -0.194 4.194 13 N -0.093 5.093 14 C 0.039 3.961 15 C -0.087 4.087 16 C -0.110 4.110 17 C -0.110 4.110 18 C -0.161 4.161 19 C 0.076 3.924 20 F -0.117 7.117 21 C -0.151 4.151 22 N -0.068 5.068 23 N -0.123 5.123 24 H 0.070 0.930 25 H 0.195 0.805 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.208 0.792 29 H 0.128 0.872 30 H 0.134 0.866 31 H 0.154 0.846 32 H 0.155 0.845 33 H 0.155 0.845 34 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 28.020 -6.579 4.206 29.087 hybrid contribution 0.114 0.804 1.204 1.452 sum 28.134 -5.775 5.410 29.225 Atomic orbital electron populations 1.69699 1.05041 1.25827 1.57559 1.24632 0.95194 0.97134 1.01960 0.86544 0.79005 0.85018 0.77933 1.20954 1.21718 1.20609 1.19052 0.80236 0.94916 1.43095 0.88881 1.42652 1.03909 1.01807 1.91208 1.18911 0.80242 0.89836 1.00097 1.22522 0.98992 1.04939 0.88495 1.23479 0.84232 1.09456 1.02205 1.47308 1.08239 1.46897 1.06837 1.20857 0.80349 1.00533 0.94319 1.19514 0.96880 0.94163 0.98176 1.21191 0.93952 1.00794 0.95068 1.21056 0.98217 0.92558 0.99179 1.21275 0.99820 0.97863 0.97100 1.17617 0.97954 0.80459 0.96412 1.91521 1.95707 1.38554 1.85879 1.21047 0.98781 0.93272 1.01987 1.78252 1.16273 1.19898 0.92375 1.75121 0.95920 1.14962 1.26250 0.93033 0.80501 0.93635 0.93478 0.79223 0.87172 0.86558 0.84641 0.84451 0.84462 0.84476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.60 13.97 55.49 0.78 -28.82 16 2 C 0.01 0.20 5.50 -17.43 -0.10 0.10 16 3 Si 0.88 22.79 27.73 -169.99 -4.71 18.07 16 4 H -0.28 -7.35 7.11 56.52 0.40 -6.95 16 5 H -0.29 -7.47 7.11 56.52 0.40 -7.06 16 6 H -0.28 -6.85 6.52 56.52 0.37 -6.48 16 7 C -0.24 -7.00 10.47 -15.06 -0.16 -7.15 16 8 H 0.09 2.81 8.06 -52.49 -0.42 2.39 16 9 N -0.75 -18.56 5.40 -61.08 -0.33 -18.89 16 10 C 0.24 4.82 6.82 -5.20 -0.04 4.78 16 11 C -0.01 -0.21 6.61 -82.78 -0.55 -0.76 16 12 C -0.04 -0.60 11.50 -17.05 -0.20 -0.80 16 13 N -0.30 -3.82 3.43 -62.45 -0.21 -4.04 16 14 C 0.16 1.23 6.58 -5.20 -0.03 1.20 16 15 C -0.09 -0.71 5.25 -104.63 -0.55 -1.26 16 16 C -0.09 -0.71 9.70 -39.57 -0.38 -1.09 16 17 C -0.09 -0.64 10.04 -39.59 -0.40 -1.04 16 18 C -0.14 -1.08 10.03 -39.52 -0.40 -1.47 16 19 C 0.09 0.86 7.30 -39.42 -0.29 0.58 16 20 F -0.14 -1.39 17.27 2.25 0.04 -1.36 16 21 C -0.13 -1.12 9.68 -39.51 -0.38 -1.50 16 22 N -0.09 -1.46 12.92 60.35 0.78 -0.68 16 23 N -0.25 -4.95 12.41 33.28 0.41 -4.54 16 24 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 25 H 0.36 9.03 5.52 -40.82 -0.23 8.81 16 26 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.19 1.93 8.06 -52.48 -0.42 1.51 16 29 H 0.11 0.66 8.08 -51.93 -0.42 0.24 16 30 H 0.12 0.54 8.01 -51.93 -0.42 0.12 16 31 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 32 H 0.14 0.63 8.06 -52.49 -0.42 0.20 16 33 H 0.14 0.78 8.06 -52.48 -0.42 0.36 16 34 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 LS Contribution 307.92 15.07 4.64 4.64 Total: -1.00 -35.68 307.92 -5.69 -41.37 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -3.61 Total: 2.66 kcal Atomic # 6 Polarization: -4.96 SS G_CDS: -3.46 Total: -8.42 kcal Atomic # 7 Polarization: -58.39 SS G_CDS: 1.42 Total: -56.97 kcal Atomic # 9 Polarization: -1.39 SS G_CDS: 0.04 Total: -1.36 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -4.71 Total: 18.07 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -35.68 -5.69 -41.37 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594640841.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.770 kcal (2) G-P(sol) polarization free energy of solvation -35.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds