Wall clock time and date at job start Mon Mar 30 2020 01:42:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00313 * 3 2 1 5 5 H 1.48494 * 109.46800 * 30.00360 * 3 2 1 6 6 H 1.48504 * 109.46913 * 150.00063 * 3 2 1 7 7 C 1.38817 * 119.99892 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99438 * 0.26604 * 7 2 1 9 9 N 1.36935 * 119.99990 * 179.97438 * 7 2 1 10 10 C 1.46499 * 119.99938 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47276 * 180.02562 * 10 9 7 12 12 C 1.35339 * 126.75399 * 94.99868 * 11 10 9 13 13 N 1.35320 * 106.17716 * 180.02562 * 12 11 10 14 14 C 1.46500 * 125.86726 * 179.97438 * 13 12 11 15 15 C 1.50695 * 109.47057 * 124.99774 * 14 13 12 16 16 C 1.38271 * 119.98477 * 89.99767 * 15 14 13 17 17 C 1.38230 * 120.05100 * 179.97438 * 16 15 14 18 18 C 1.38218 * 120.02355 * 0.02562 * 17 16 15 19 19 C 1.38437 * 119.97613 * 0.02562 * 18 17 16 20 20 F 1.35098 * 120.02698 * 179.97438 * 19 18 17 21 21 C 1.38177 * 119.99107 * 269.72128 * 15 14 13 22 22 N 1.28716 * 108.26162 * 359.97438 * 13 12 11 23 23 N 1.28641 * 110.17681 * 359.72203 * 22 13 12 24 24 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 25 25 H 0.96999 * 120.00077 * 359.97438 * 9 7 2 26 26 H 1.09004 * 109.47024 * 300.00223 * 10 9 7 27 27 H 1.09005 * 109.47136 * 59.99839 * 10 9 7 28 28 H 1.08003 * 126.91293 * 0.03763 * 12 11 10 29 29 H 1.08995 * 109.46760 * 244.99904 * 14 13 12 30 30 H 1.08997 * 109.47437 * 4.99908 * 14 13 12 31 31 H 1.07999 * 119.97680 * 359.97438 * 16 15 14 32 32 H 1.07998 * 119.98610 * 180.02562 * 17 16 15 33 33 H 1.08006 * 120.01309 * 180.02562 * 18 17 16 34 34 H 1.08002 * 120.00990 * 359.97438 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 1.4701 -2.1374 -0.0053 9 7 3.3796 -1.2022 -0.0011 10 6 4.1120 -2.4710 -0.0011 11 6 5.5936 -2.1957 -0.0011 12 6 6.4071 -2.1406 1.0792 13 7 7.6450 -1.8679 0.6054 14 6 8.8580 -1.7135 1.4122 15 6 9.9184 -2.6598 0.9111 16 6 10.7993 -2.2518 -0.0734 17 6 11.7728 -3.1185 -0.5337 18 6 11.8662 -4.3944 -0.0105 19 6 10.9841 -4.8044 0.9745 20 9 11.0741 -6.0514 1.4863 21 6 10.0135 -3.9330 1.4396 22 7 7.5734 -1.7674 -0.6758 23 7 6.3646 -1.9637 -1.0695 24 1 -0.4850 0.8401 0.0004 25 1 3.8646 -0.3622 -0.0014 26 1 3.8490 -3.0424 0.8892 27 1 3.8483 -3.0428 -0.8908 28 1 6.1251 -2.2855 2.1116 29 1 9.2191 -0.6882 1.3327 30 1 8.6326 -1.9395 2.4543 31 1 10.7268 -1.2552 -0.4832 32 1 12.4606 -2.7986 -1.3024 33 1 12.6272 -5.0714 -0.3700 34 1 9.3284 -4.2497 2.2121 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594640841.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:44 Heat of formation + Delta-G solvation = 75.087403 kcal Electronic energy + Delta-G solvation = -19827.102432 eV Core-core repulsion = 16483.458138 eV Total energy + Delta-G solvation = -3343.644294 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.108 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.96866 -44.23071 -40.19477 -37.09843 -35.86821 -33.83614 -32.54257 -31.94778 -31.54205 -28.26563 -27.71628 -24.40325 -23.86658 -23.61526 -22.64574 -21.76653 -19.88990 -18.66719 -18.08003 -17.41539 -17.28099 -17.09268 -16.65677 -16.53134 -15.99579 -15.79032 -15.13112 -14.99242 -14.60438 -14.45742 -14.35986 -13.97188 -13.48155 -13.40878 -13.19125 -12.89652 -12.79934 -12.53656 -12.20026 -12.11138 -11.82412 -11.78072 -11.06995 -11.00819 -10.23116 -10.13339 -9.77497 -9.31781 -8.02205 -5.35734 -0.08088 0.13877 0.64693 1.35452 1.41141 1.44169 1.48952 1.55144 2.48285 2.59097 3.04359 3.28673 3.36340 3.47749 3.65222 3.83149 3.90104 4.00597 4.06157 4.09878 4.24616 4.27835 4.41365 4.58583 4.73956 4.85282 4.98634 5.04734 5.13168 5.14796 5.25285 5.37215 5.66852 5.75684 5.82001 6.21436 7.06081 7.52912 7.80957 8.01158 9.19084 Molecular weight = 276.11amu Principal moments of inertia in cm(-1) A = 0.037192 B = 0.003372 C = 0.003238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.665623 B = 8300.828015 C = 8644.445129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.981 5.981 2 C -0.059 4.059 3 Si 0.953 3.047 4 H -0.287 1.287 5 H -0.289 1.289 6 H -0.256 1.256 7 C -0.232 4.232 8 H 0.066 0.934 9 N -0.752 5.752 10 C 0.240 3.760 11 C -0.046 4.046 12 C -0.016 4.016 13 N -0.283 5.283 14 C 0.150 3.850 15 C -0.095 4.095 16 C -0.099 4.099 17 C -0.094 4.094 18 C -0.144 4.144 19 C 0.069 3.931 20 F -0.150 7.150 21 C -0.137 4.137 22 N -0.101 5.101 23 N -0.301 5.301 24 H 0.259 0.741 25 H 0.363 0.637 26 H 0.067 0.933 27 H 0.031 0.969 28 H 0.233 0.767 29 H 0.132 0.868 30 H 0.154 0.846 31 H 0.145 0.855 32 H 0.161 0.839 33 H 0.152 0.848 34 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.118 -5.859 6.792 31.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.631 5.631 2 C -0.251 4.251 3 Si 0.780 3.220 4 H -0.213 1.213 5 H -0.216 1.216 6 H -0.181 1.181 7 C -0.363 4.363 8 H 0.084 0.916 9 N -0.398 5.398 10 C 0.112 3.888 11 C -0.185 4.185 12 C -0.168 4.168 13 N -0.076 5.076 14 C 0.032 3.968 15 C -0.096 4.096 16 C -0.117 4.117 17 C -0.112 4.112 18 C -0.163 4.163 19 C 0.050 3.950 20 F -0.128 7.128 21 C -0.157 4.157 22 N -0.080 5.080 23 N -0.168 5.168 24 H 0.068 0.932 25 H 0.196 0.804 26 H 0.085 0.915 27 H 0.049 0.951 28 H 0.249 0.751 29 H 0.150 0.850 30 H 0.172 0.828 31 H 0.163 0.837 32 H 0.179 0.821 33 H 0.170 0.830 34 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 30.742 -5.750 5.534 31.761 hybrid contribution -0.590 0.415 0.803 1.079 sum 30.153 -5.335 6.337 31.270 Atomic orbital electron populations 1.69863 1.06913 1.26685 1.59675 1.25411 0.96041 1.00933 1.02673 0.85447 0.78553 0.80209 0.77759 1.21324 1.21562 1.18128 1.19063 0.82145 0.93889 1.41225 0.91604 1.42668 1.02526 1.03585 1.91020 1.18889 0.81935 0.87868 1.00096 1.22226 0.98073 1.08174 0.89981 1.23944 0.83695 1.06306 1.02851 1.47706 1.09433 1.44406 1.06102 1.21432 0.78352 1.01748 0.95310 1.19594 0.97302 0.94168 0.98532 1.21475 0.93979 1.01425 0.94851 1.21369 0.98360 0.92098 0.99378 1.21545 0.99765 0.98483 0.96540 1.17929 0.99140 0.80398 0.97510 1.91488 1.95872 1.39296 1.86171 1.21233 0.98794 0.93363 1.02274 1.78146 1.15133 1.20525 0.94235 1.75055 0.97161 1.16703 1.27889 0.93224 0.80437 0.91537 0.95128 0.75109 0.84974 0.82789 0.83696 0.82129 0.82978 0.83392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.33 13.97 21.65 0.30 -63.03 16 2 C -0.06 -3.52 5.50 84.86 0.47 -3.06 16 3 Si 0.95 46.85 27.73 68.60 1.90 48.75 16 4 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 5 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 6 H -0.26 -11.49 6.52 99.48 0.65 -10.84 16 7 C -0.23 -13.47 10.47 84.04 0.88 -12.59 16 8 H 0.07 4.09 8.06 -2.91 -0.02 4.07 16 9 N -0.75 -36.61 5.40 -347.17 -1.87 -38.48 16 10 C 0.24 9.53 6.82 85.63 0.58 10.12 16 11 C -0.05 -1.59 6.61 41.59 0.28 -1.31 16 12 C -0.02 -0.39 11.50 83.49 0.96 0.57 16 13 N -0.28 -6.25 3.43 -351.49 -1.21 -7.46 16 14 C 0.15 1.67 6.58 85.63 0.56 2.23 16 15 C -0.09 -1.29 5.25 -19.87 -0.10 -1.39 16 16 C -0.10 -1.29 9.70 22.28 0.22 -1.07 16 17 C -0.09 -1.10 10.04 22.26 0.22 -0.87 16 18 C -0.14 -1.96 10.03 22.31 0.22 -1.74 16 19 C 0.07 1.17 7.30 22.38 0.16 1.34 16 20 F -0.15 -2.93 17.27 44.97 0.78 -2.15 16 21 C -0.14 -2.04 9.68 22.31 0.22 -1.83 16 22 N -0.10 -3.13 12.92 37.02 0.48 -2.65 16 23 N -0.30 -11.40 12.41 -48.61 -0.60 -12.01 16 24 H 0.26 15.88 8.31 -92.70 -0.77 15.11 16 25 H 0.36 17.44 5.52 -92.71 -0.51 16.93 16 26 H 0.07 2.37 8.14 -2.38 -0.02 2.35 16 27 H 0.03 1.31 8.14 -2.38 -0.02 1.29 16 28 H 0.23 3.43 8.06 -2.91 -0.02 3.40 16 29 H 0.13 0.98 8.08 -2.39 -0.02 0.96 16 30 H 0.15 0.58 8.01 -2.39 -0.02 0.56 16 31 H 0.15 1.56 8.06 -2.91 -0.02 1.54 16 32 H 0.16 1.02 8.06 -2.91 -0.02 1.00 16 33 H 0.15 1.48 8.06 -2.91 -0.02 1.46 16 34 H 0.15 1.74 8.06 -2.91 -0.02 1.72 16 Total: -1.00 -78.90 307.92 5.01 -73.90 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: 0.56 Total: 12.74 kcal Atomic # 6 Polarization: -14.28 SS G_CDS: 4.67 Total: -9.61 kcal Atomic # 7 Polarization: -120.73 SS G_CDS: -2.90 Total: -123.63 kcal Atomic # 9 Polarization: -2.93 SS G_CDS: 0.78 Total: -2.15 kcal Atomic # 14 Polarization: 46.85 SS G_CDS: 1.90 Total: 48.75 kcal Total: -78.90 5.01 -73.90 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594640841.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.985 kcal (2) G-P(sol) polarization free energy of solvation -78.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds