Wall clock time and date at job start Mon Mar 30 2020 01:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38263 * 119.95230 * 2 1 4 4 C 1.38481 * 120.10266 * 180.02562 * 3 2 1 5 5 F 1.35106 * 119.99186 * 180.02562 * 4 3 2 6 6 C 1.38363 * 120.01781 * 359.97438 * 4 3 2 7 7 C 1.38768 * 119.90802 * 0.02562 * 6 4 3 8 8 N 1.40240 * 120.05634 * 180.02562 * 7 6 4 9 9 C 1.36129 * 125.93669 * 4.99646 * 8 7 6 10 10 C 1.35371 * 106.04681 * 179.97438 * 9 8 7 11 11 C 1.50699 * 126.73242 * 179.97438 * 10 9 8 12 12 N 1.46499 * 109.46700 * 95.00176 * 11 10 9 13 13 C 1.36935 * 119.99926 * 180.02562 * 12 11 10 14 14 H 1.08005 * 119.99877 * 359.97438 * 13 12 11 15 15 C 1.38811 * 120.00369 * 179.73019 * 13 12 11 16 16 N 1.31617 * 119.99773 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00451 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47050 * 59.99408 * 17 15 13 19 19 H 1.48496 * 109.47289 * 179.97438 * 17 15 13 20 20 H 1.48508 * 109.46855 * 299.99389 * 17 15 13 21 21 N 1.33778 * 106.53916 * 0.26824 * 10 9 8 22 22 N 1.28613 * 109.05774 * 359.55871 * 21 10 9 23 23 C 1.38110 * 119.95587 * 180.32027 * 2 1 3 24 24 H 1.09005 * 109.46780 * 89.99907 * 1 2 3 25 25 H 1.08996 * 109.46714 * 209.99924 * 1 2 3 26 26 H 1.08998 * 109.46963 * 329.99887 * 1 2 3 27 27 H 1.08002 * 119.94881 * 0.02562 * 3 2 1 28 28 H 1.08002 * 120.05037 * 180.02562 * 6 4 3 29 29 H 1.07998 * 126.97625 * 359.97438 * 9 8 7 30 30 H 1.08998 * 109.46743 * 335.00652 * 11 10 9 31 31 H 1.08994 * 109.47542 * 215.00511 * 11 10 9 32 32 H 0.97005 * 120.00261 * 0.02562 * 12 11 10 33 33 H 0.97004 * 120.00382 * 180.02562 * 16 15 13 34 34 H 1.07994 * 120.00950 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1974 1.1980 0.0000 4 6 3.5822 1.2016 -0.0005 5 9 4.2545 2.3735 0.0000 6 6 4.2775 0.0054 -0.0005 7 6 3.5853 -1.1973 -0.0005 8 7 4.2869 -2.4116 0.0000 9 6 5.6373 -2.5540 0.0966 10 6 5.8768 -3.8858 0.0574 11 6 7.2216 -4.5621 0.1300 12 7 7.5000 -4.9477 1.5156 13 6 8.6730 -5.5816 1.8274 14 1 9.3928 -5.7977 1.0517 15 6 8.9394 -5.9420 3.1412 16 7 8.0647 -5.6738 4.0874 17 14 10.5400 -6.8061 3.5666 18 1 11.6855 -5.9381 3.1933 19 1 10.5819 -7.0802 5.0254 20 1 10.6249 -8.0866 2.8192 21 7 4.6863 -4.4834 -0.0649 22 7 3.7661 -3.5852 -0.0903 23 6 2.1967 -1.1966 -0.0067 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3632 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.6558 2.1324 0.0004 28 1 5.3575 0.0076 -0.0005 29 1 6.3689 -1.7647 0.1862 30 1 7.9930 -3.8752 -0.2180 31 1 7.2156 -5.4513 -0.5004 32 1 6.8534 -4.7539 2.2123 33 1 8.2509 -5.9253 5.0055 34 1 1.6562 -2.1315 -0.0115 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594654274.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:09 Heat of formation + Delta-G solvation = 96.986466 kcal Electronic energy + Delta-G solvation = -19824.379951 eV Core-core repulsion = 16481.685272 eV Total energy + Delta-G solvation = -3342.694679 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.108 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.32282 -43.30260 -39.70626 -35.46196 -34.50612 -32.67492 -31.81931 -30.42395 -29.81347 -27.65185 -25.88036 -24.59394 -23.07835 -22.34014 -21.21601 -20.61370 -18.38692 -17.23355 -16.83177 -16.64511 -16.46087 -16.35369 -15.91840 -14.93194 -14.65404 -14.05836 -13.94524 -13.77383 -13.68674 -13.25778 -12.89081 -12.59897 -12.47382 -12.30447 -12.19355 -11.75890 -11.36516 -10.96863 -10.81863 -10.71693 -10.64105 -10.12920 -9.78544 -9.22209 -9.12796 -8.89517 -8.79421 -6.94551 -5.74908 -3.05380 0.26610 0.62413 1.86546 2.14537 2.73365 3.10498 3.46218 3.50334 3.51714 3.69245 4.04967 4.36947 4.44819 4.57857 4.63464 4.70965 4.81442 5.00066 5.08706 5.17234 5.24756 5.33758 5.47225 5.53191 5.60543 5.65718 5.85379 5.93328 6.12622 6.22662 6.29192 6.56393 6.69182 6.75818 7.69532 8.41771 8.61247 9.53625 10.07920 10.43872 11.47655 Molecular weight = 276.11amu Principal moments of inertia in cm(-1) A = 0.027793 B = 0.003399 C = 0.003240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.197510 B = 8235.890558 C = 8639.395474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.036 4.036 3 C -0.155 4.155 4 C 0.129 3.871 5 F -0.130 7.130 6 C -0.167 4.167 7 C 0.175 3.825 8 N -0.258 5.258 9 C -0.039 4.039 10 C 0.005 3.995 11 C 0.232 3.768 12 N -0.726 5.726 13 C -0.243 4.243 14 H 0.073 0.927 15 C -0.012 4.012 16 N -0.932 5.932 17 Si 0.911 3.089 18 H -0.285 1.285 19 H -0.291 1.291 20 H -0.285 1.285 21 N -0.238 5.238 22 N -0.085 5.085 23 C -0.118 4.118 24 H 0.080 0.920 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.144 0.856 28 H 0.149 0.851 29 H 0.194 0.806 30 H 0.041 0.959 31 H 0.043 0.957 32 H 0.386 0.614 33 H 0.256 0.744 34 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.137 16.806 -10.191 24.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.037 4.037 3 C -0.175 4.175 4 C 0.109 3.891 5 F -0.108 7.108 6 C -0.188 4.188 7 C 0.082 3.918 8 N -0.046 5.046 9 C -0.186 4.186 10 C -0.131 4.131 11 C 0.103 3.897 12 N -0.371 5.371 13 C -0.374 4.374 14 H 0.091 0.909 15 C -0.208 4.208 16 N -0.580 5.580 17 Si 0.741 3.259 18 H -0.212 1.212 19 H -0.217 1.217 20 H -0.211 1.211 21 N -0.106 5.106 22 N -0.063 5.063 23 C -0.138 4.138 24 H 0.098 0.902 25 H 0.095 0.905 26 H 0.093 0.907 27 H 0.161 0.839 28 H 0.167 0.833 29 H 0.211 0.789 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.219 0.781 33 H 0.066 0.934 34 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -15.199 15.885 -10.331 24.291 hybrid contribution 1.844 0.529 0.732 2.053 sum -13.355 16.413 -9.599 23.236 Atomic orbital electron populations 1.20863 0.89335 1.03834 1.03265 1.19623 0.96935 0.91063 0.96051 1.21149 0.92057 0.99729 1.04553 1.17152 0.89822 0.80713 1.01410 1.91551 1.80457 1.45111 1.93688 1.20785 1.01732 0.89671 1.06661 1.17219 0.91272 0.81760 1.01522 1.44569 1.05962 1.05910 1.48128 1.23622 0.84745 1.00313 1.09957 1.22560 0.96723 0.90416 1.03372 1.19002 0.84980 0.95903 0.89853 1.42292 1.21714 1.71022 1.02071 1.19179 0.94993 1.30369 0.92828 0.90856 1.24768 0.98519 1.01714 0.95788 1.69672 1.35521 1.52322 1.00463 0.86220 0.83018 0.79545 0.77090 1.21203 1.21708 1.21136 1.75121 0.97807 1.23090 1.14621 1.78325 1.22540 0.85533 1.19861 1.20950 0.91215 0.99908 1.01774 0.90163 0.90480 0.90707 0.83854 0.83301 0.78901 0.94171 0.93965 0.78064 0.93406 0.83237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.59 10.01 36.01 0.36 -0.23 16 2 C -0.04 -0.28 5.88 -104.66 -0.61 -0.90 16 3 C -0.16 -1.21 9.68 -39.48 -0.38 -1.59 16 4 C 0.13 1.22 7.30 -39.45 -0.29 0.93 16 5 F -0.13 -1.29 17.27 2.25 0.04 -1.25 16 6 C -0.17 -1.75 9.44 -39.34 -0.37 -2.12 16 7 C 0.17 2.14 6.67 -83.58 -0.56 1.58 16 8 N -0.26 -3.98 3.56 -10.47 -0.04 -4.02 16 9 C -0.04 -0.62 10.84 -16.67 -0.18 -0.80 16 10 C 0.00 0.09 6.61 -82.77 -0.55 -0.46 16 11 C 0.23 4.84 6.82 -5.19 -0.04 4.81 16 12 N -0.73 -19.01 5.59 -61.09 -0.34 -19.35 16 13 C -0.24 -6.86 9.99 -15.06 -0.15 -7.01 16 14 H 0.07 1.96 7.83 -52.48 -0.41 1.55 16 15 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 16 N -0.93 -28.76 13.06 55.49 0.72 -28.03 16 17 Si 0.91 22.52 29.55 -169.99 -5.02 17.50 16 18 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 19 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 20 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 21 N -0.24 -4.85 12.40 33.29 0.41 -4.43 16 22 N -0.08 -1.53 12.42 60.35 0.75 -0.78 16 23 C -0.12 -1.23 9.27 -39.40 -0.37 -1.59 16 24 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.08 0.38 8.09 -51.93 -0.42 -0.04 16 26 H 0.07 0.28 8.08 -51.93 -0.42 -0.14 16 27 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 28 H 0.15 1.38 6.79 -52.49 -0.36 1.02 16 29 H 0.19 2.35 7.13 -52.49 -0.37 1.97 16 30 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.39 10.91 7.66 -40.82 -0.31 10.60 16 33 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 34 H 0.15 1.55 7.70 -52.49 -0.40 1.15 16 LS Contribution 307.24 15.07 4.63 4.63 Total: -1.00 -33.33 307.24 -5.60 -38.93 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -3.52 Total: 4.61 kcal Atomic # 6 Polarization: -4.58 SS G_CDS: -3.23 Total: -7.81 kcal Atomic # 7 Polarization: -58.12 SS G_CDS: 1.51 Total: -56.61 kcal Atomic # 9 Polarization: -1.29 SS G_CDS: 0.04 Total: -1.25 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -33.33 -5.60 -38.93 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594654274.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.914 kcal (2) G-P(sol) polarization free energy of solvation -33.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds