Wall clock time and date at job start Mon Mar 30 2020 01:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38263 * 119.95230 * 2 1 4 4 C 1.38481 * 120.10266 * 180.02562 * 3 2 1 5 5 F 1.35106 * 119.99186 * 180.02562 * 4 3 2 6 6 C 1.38363 * 120.01781 * 359.97438 * 4 3 2 7 7 C 1.38768 * 119.90802 * 0.02562 * 6 4 3 8 8 N 1.40240 * 120.05634 * 180.02562 * 7 6 4 9 9 C 1.36129 * 125.93669 * 4.99646 * 8 7 6 10 10 C 1.35371 * 106.04681 * 179.97438 * 9 8 7 11 11 C 1.50699 * 126.73242 * 179.97438 * 10 9 8 12 12 N 1.46499 * 109.46700 * 95.00176 * 11 10 9 13 13 C 1.36935 * 119.99926 * 180.02562 * 12 11 10 14 14 H 1.08005 * 119.99877 * 359.97438 * 13 12 11 15 15 C 1.38811 * 120.00369 * 179.73019 * 13 12 11 16 16 N 1.31617 * 119.99773 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00451 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47050 * 59.99408 * 17 15 13 19 19 H 1.48496 * 109.47289 * 179.97438 * 17 15 13 20 20 H 1.48508 * 109.46855 * 299.99389 * 17 15 13 21 21 N 1.33778 * 106.53916 * 0.26824 * 10 9 8 22 22 N 1.28613 * 109.05774 * 359.55871 * 21 10 9 23 23 C 1.38110 * 119.95587 * 180.32027 * 2 1 3 24 24 H 1.09005 * 109.46780 * 89.99907 * 1 2 3 25 25 H 1.08996 * 109.46714 * 209.99924 * 1 2 3 26 26 H 1.08998 * 109.46963 * 329.99887 * 1 2 3 27 27 H 1.08002 * 119.94881 * 0.02562 * 3 2 1 28 28 H 1.08002 * 120.05037 * 180.02562 * 6 4 3 29 29 H 1.07998 * 126.97625 * 359.97438 * 9 8 7 30 30 H 1.08998 * 109.46743 * 335.00652 * 11 10 9 31 31 H 1.08994 * 109.47542 * 215.00511 * 11 10 9 32 32 H 0.97005 * 120.00261 * 0.02562 * 12 11 10 33 33 H 0.97004 * 120.00382 * 180.02562 * 16 15 13 34 34 H 1.07994 * 120.00950 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1974 1.1980 0.0000 4 6 3.5822 1.2016 -0.0005 5 9 4.2545 2.3735 0.0000 6 6 4.2775 0.0054 -0.0005 7 6 3.5853 -1.1973 -0.0005 8 7 4.2869 -2.4116 0.0000 9 6 5.6373 -2.5540 0.0966 10 6 5.8768 -3.8858 0.0574 11 6 7.2216 -4.5621 0.1300 12 7 7.5000 -4.9477 1.5156 13 6 8.6730 -5.5816 1.8274 14 1 9.3928 -5.7977 1.0517 15 6 8.9394 -5.9420 3.1412 16 7 8.0647 -5.6738 4.0874 17 14 10.5400 -6.8061 3.5666 18 1 11.6855 -5.9381 3.1933 19 1 10.5819 -7.0802 5.0254 20 1 10.6249 -8.0866 2.8192 21 7 4.6863 -4.4834 -0.0649 22 7 3.7661 -3.5852 -0.0903 23 6 2.1967 -1.1966 -0.0067 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3632 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.6558 2.1324 0.0004 28 1 5.3575 0.0076 -0.0005 29 1 6.3689 -1.7647 0.1862 30 1 7.9930 -3.8752 -0.2180 31 1 7.2156 -5.4513 -0.5004 32 1 6.8534 -4.7539 2.2123 33 1 8.2509 -5.9253 5.0055 34 1 1.6562 -2.1315 -0.0115 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594654274.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:08 Heat of formation + Delta-G solvation = 75.438593 kcal Electronic energy + Delta-G solvation = -19825.314337 eV Core-core repulsion = 16481.685272 eV Total energy + Delta-G solvation = -3343.629065 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.108 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -50.07077 -44.59568 -40.50230 -37.00156 -35.89844 -33.94282 -33.15702 -31.85803 -31.01576 -28.37559 -27.54329 -25.64489 -24.86802 -23.46469 -22.21961 -21.87222 -19.58415 -19.07689 -17.75328 -17.57597 -17.39249 -17.26060 -16.75798 -16.59368 -16.12704 -15.63695 -15.16325 -14.66386 -14.57226 -14.44751 -14.31636 -13.85339 -13.40009 -13.33504 -13.03017 -12.84339 -12.72684 -12.66605 -12.49964 -12.15241 -12.04950 -11.93074 -11.73383 -10.96262 -10.46297 -9.93834 -9.76378 -9.04585 -7.94041 -5.25337 -0.64091 -0.11244 0.77271 1.06045 1.28691 1.50251 1.54113 1.60046 2.31335 2.58923 2.86852 3.23548 3.32783 3.41704 3.70410 3.74217 3.80305 3.99454 4.06022 4.11048 4.17342 4.18567 4.57094 4.65334 4.78104 4.82027 4.85967 4.93467 5.01108 5.14669 5.21124 5.26211 5.46318 5.50303 5.73015 6.24866 7.26283 7.31870 8.01552 8.27775 9.29687 Molecular weight = 276.11amu Principal moments of inertia in cm(-1) A = 0.027793 B = 0.003399 C = 0.003240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.197510 B = 8235.890558 C = 8639.395474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.029 4.029 3 C -0.137 4.137 4 C 0.122 3.878 5 F -0.132 7.132 6 C -0.166 4.166 7 C 0.137 3.863 8 N -0.245 5.245 9 C -0.022 4.022 10 C -0.023 4.023 11 C 0.235 3.765 12 N -0.740 5.740 13 C -0.247 4.247 14 H 0.086 0.914 15 C -0.077 4.077 16 N -0.973 5.973 17 Si 0.981 3.019 18 H -0.272 1.272 19 H -0.298 1.298 20 H -0.278 1.278 21 N -0.280 5.280 22 N -0.098 5.098 23 C -0.124 4.124 24 H 0.094 0.906 25 H 0.076 0.924 26 H 0.094 0.906 27 H 0.176 0.824 28 H 0.158 0.842 29 H 0.229 0.771 30 H 0.067 0.933 31 H 0.036 0.964 32 H 0.371 0.629 33 H 0.251 0.749 34 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.463 18.988 -10.974 26.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.030 4.030 3 C -0.156 4.156 4 C 0.102 3.898 5 F -0.110 7.110 6 C -0.188 4.188 7 C 0.046 3.954 8 N -0.033 5.033 9 C -0.170 4.170 10 C -0.160 4.160 11 C 0.107 3.893 12 N -0.383 5.383 13 C -0.378 4.378 14 H 0.104 0.896 15 C -0.269 4.269 16 N -0.624 5.624 17 Si 0.809 3.191 18 H -0.197 1.197 19 H -0.224 1.224 20 H -0.204 1.204 21 N -0.147 5.147 22 N -0.076 5.076 23 C -0.144 4.144 24 H 0.112 0.888 25 H 0.095 0.905 26 H 0.113 0.887 27 H 0.193 0.807 28 H 0.176 0.824 29 H 0.246 0.754 30 H 0.085 0.915 31 H 0.054 0.946 32 H 0.202 0.798 33 H 0.060 0.940 34 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -15.548 18.085 -11.175 26.338 hybrid contribution 1.793 0.039 0.887 2.001 sum -13.756 18.123 -10.288 24.970 Atomic orbital electron populations 1.20969 0.86988 1.04878 1.04438 1.19933 0.98446 0.90049 0.94605 1.21536 0.91449 1.00918 1.01730 1.17261 0.90502 0.80255 1.01829 1.91553 1.80651 1.45039 1.93753 1.20890 1.02366 0.89411 1.06086 1.17532 0.92010 0.80937 1.04927 1.44750 1.06057 1.06299 1.46161 1.24025 0.85489 0.99892 1.07573 1.22364 0.95856 0.91763 1.06004 1.19034 0.86910 0.96314 0.87014 1.42498 1.20884 1.71087 1.03835 1.19674 0.95647 1.29245 0.93219 0.89566 1.25664 1.02110 1.03258 0.95843 1.69853 1.37731 1.54278 1.00510 0.85110 0.79199 0.78610 0.76198 1.19728 1.22415 1.20380 1.75044 0.98616 1.24632 1.16450 1.78213 1.22283 0.86288 1.20775 1.21113 0.90701 1.00894 1.01684 0.88782 0.90497 0.88680 0.80706 0.82391 0.75434 0.91514 0.94580 0.79839 0.94037 0.83862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.81 10.01 71.24 0.71 -0.10 16 2 C -0.03 -0.39 5.88 -19.89 -0.12 -0.51 16 3 C -0.14 -1.67 9.68 22.33 0.22 -1.45 16 4 C 0.12 2.00 7.30 22.36 0.16 2.16 16 5 F -0.13 -2.28 17.27 44.97 0.78 -1.51 16 6 C -0.17 -3.20 9.44 22.43 0.21 -2.99 16 7 C 0.14 3.23 6.67 38.07 0.25 3.48 16 8 N -0.25 -7.52 3.56 -187.05 -0.67 -8.18 16 9 C -0.02 -0.67 10.84 83.36 0.90 0.23 16 10 C -0.02 -0.90 6.61 41.60 0.28 -0.63 16 11 C 0.23 9.86 6.82 85.63 0.58 10.44 16 12 N -0.74 -39.29 5.59 -347.19 -1.94 -41.23 16 13 C -0.25 -13.93 9.99 84.03 0.84 -13.09 16 14 H 0.09 4.53 7.83 -2.91 -0.02 4.51 16 15 C -0.08 -4.48 5.50 84.86 0.47 -4.02 16 16 N -0.97 -61.34 13.06 21.65 0.28 -61.06 16 17 Si 0.98 46.49 29.55 68.60 2.03 48.52 16 18 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 19 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 20 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 21 N -0.28 -11.76 12.40 -48.59 -0.60 -12.36 16 22 N -0.10 -3.61 12.42 37.02 0.46 -3.15 16 23 C -0.12 -2.44 9.27 22.39 0.21 -2.24 16 24 H 0.09 0.46 8.14 -2.38 -0.02 0.44 16 25 H 0.08 0.58 8.09 -2.39 -0.02 0.56 16 26 H 0.09 0.32 8.08 -2.39 -0.02 0.30 16 27 H 0.18 1.04 8.06 -2.91 -0.02 1.02 16 28 H 0.16 2.62 6.79 -2.91 -0.02 2.60 16 29 H 0.23 5.09 7.13 -2.91 -0.02 5.06 16 30 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 31 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.37 21.59 7.66 -92.70 -0.71 20.88 16 33 H 0.25 15.32 8.31 -92.71 -0.77 14.55 16 34 H 0.14 2.96 7.70 -2.91 -0.02 2.94 16 Total: -1.00 -73.37 307.24 5.49 -67.88 By element: Atomic # 1 Polarization: 19.35 SS G_CDS: 0.43 Total: 19.79 kcal Atomic # 6 Polarization: -13.42 SS G_CDS: 4.72 Total: -8.70 kcal Atomic # 7 Polarization: -123.52 SS G_CDS: -2.47 Total: -125.99 kcal Atomic # 9 Polarization: -2.28 SS G_CDS: 0.78 Total: -1.51 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 2.03 Total: 48.52 kcal Total: -73.37 5.49 -67.88 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594654274.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.322 kcal (2) G-P(sol) polarization free energy of solvation -73.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds