Wall clock time and date at job start Mon Mar 30 2020 01:27:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.46985 * 2 1 4 4 C 1.50696 * 109.47160 * 120.00088 * 2 1 3 5 5 H 1.08005 * 119.99725 * 119.99539 * 4 2 1 6 6 C 1.37878 * 120.00189 * 299.99829 * 4 2 1 7 7 N 1.31512 * 119.99750 * 180.02562 * 6 4 2 8 8 Si 1.86794 * 119.99818 * 359.97438 * 6 4 2 9 9 H 1.48504 * 109.46963 * 90.00024 * 8 6 4 10 10 H 1.48502 * 109.47084 * 209.99996 * 8 6 4 11 11 H 1.48500 * 109.47321 * 330.00380 * 8 6 4 12 12 N 1.46901 * 109.46538 * 240.00093 * 2 1 3 13 13 C 1.46902 * 111.00040 * 306.04362 * 12 2 1 14 14 C 1.46899 * 111.00103 * 70.00184 * 12 2 1 15 15 C 1.50703 * 109.47107 * 169.99758 * 14 12 2 16 16 N 1.28733 * 121.08584 * 90.02337 * 15 14 12 17 17 S 1.69386 * 108.98452 * 180.02562 * 16 15 14 18 18 C 1.76514 * 96.12017 * 0.02562 * 17 16 15 19 19 C 1.38784 * 133.55300 * 180.02562 * 18 17 16 20 20 C 1.36710 * 119.75781 * 179.97438 * 19 18 17 21 21 C 1.38973 * 120.15149 * 359.97438 * 20 19 18 22 22 C 1.36046 * 121.15792 * 359.97438 * 21 20 19 23 23 C 1.40805 * 105.51985 * 359.73856 * 18 17 16 24 24 H 1.08998 * 109.46803 * 299.99914 * 1 2 3 25 25 H 1.08991 * 109.47175 * 59.99483 * 1 2 3 26 26 H 1.08998 * 109.46985 * 179.97438 * 1 2 3 27 27 H 0.97008 * 119.99731 * 179.97438 * 7 6 4 28 28 H 1.09005 * 109.46528 * 183.95480 * 13 12 2 29 29 H 1.09000 * 109.46785 * 303.95569 * 13 12 2 30 30 H 1.08997 * 109.47044 * 63.96124 * 13 12 2 31 31 H 1.09002 * 109.47043 * 289.99738 * 14 12 2 32 32 H 1.09001 * 109.47354 * 49.99799 * 14 12 2 33 33 H 1.08006 * 120.12599 * 359.94715 * 19 18 17 34 34 H 1.07997 * 119.92946 * 179.97438 * 20 19 18 35 35 H 1.08003 * 119.42163 * 180.02562 * 21 20 19 36 36 H 1.08005 * 119.89121 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 2.1382 -0.8591 3.5564 8 14 0.6261 1.2798 2.6541 9 1 -0.8019 0.8745 2.6993 10 1 0.9774 1.9953 3.9071 11 1 0.8493 2.1773 1.4923 12 7 2.0196 -0.6925 -1.1995 13 6 1.4342 -2.0355 -1.3078 14 6 1.7528 0.0972 -2.4091 15 6 2.4772 -0.5163 -3.5795 16 7 1.9164 -1.4143 -4.3117 17 16 2.9963 -1.8870 -5.5280 18 6 4.3102 -0.8138 -5.0405 19 6 5.5866 -0.5800 -5.5329 20 6 6.3917 0.3403 -4.9214 21 6 5.9342 1.0397 -3.8111 22 6 4.6867 0.8285 -3.3110 23 6 3.8268 -0.1111 -3.9202 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.9042 -0.5275 4.4375 28 1 1.8663 -2.5520 -2.1649 29 1 1.6466 -2.5987 -0.3991 30 1 0.3555 -1.9520 -1.4399 31 1 0.6813 0.1053 -2.6087 32 1 2.1024 1.1189 -2.2604 33 1 5.9427 -1.1233 -6.3957 34 1 7.3855 0.5241 -5.3019 35 1 6.5799 1.7643 -3.3374 36 1 4.3519 1.3839 -2.4473 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595344891.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:50 Heat of formation + Delta-G solvation = 69.106093 kcal Electronic energy + Delta-G solvation = -18943.994018 eV Core-core repulsion = 16134.010780 eV Total energy + Delta-G solvation = -2809.983238 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 276.099 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.98030 -37.84472 -36.14623 -32.62391 -31.23940 -30.47549 -29.95092 -27.71635 -25.30750 -24.43111 -23.24031 -22.62460 -20.14311 -19.15978 -18.45339 -16.66010 -16.34017 -15.74484 -15.28782 -15.10786 -14.72173 -14.28311 -13.87716 -13.77946 -13.48850 -12.96920 -12.65323 -12.23783 -12.15483 -12.08575 -11.71036 -11.45761 -11.27795 -11.16725 -10.97691 -10.70526 -10.52202 -10.21340 -10.03935 -9.83055 -9.54511 -9.11813 -8.96860 -8.61535 -7.86012 -7.46221 -6.08995 -4.07569 0.52095 1.15624 1.46930 1.88959 2.17031 3.23498 3.32218 3.35957 3.58959 4.34811 4.36396 4.53006 4.81641 4.84159 5.08778 5.22009 5.25777 5.41963 5.43757 5.51809 5.80903 5.86468 6.05048 6.06979 6.13929 6.21801 6.25104 6.26639 6.34604 6.49898 6.62729 6.68476 6.81010 6.86815 7.12242 7.55343 7.82014 7.94591 8.60641 8.99310 9.52220 11.04031 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.024719 B = 0.005056 C = 0.004585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.437501 B = 5536.441989 C = 6106.045287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.183 3.817 3 H 0.041 0.959 4 C -0.501 4.501 5 H 0.082 0.918 6 C 0.071 3.929 7 N -0.898 5.898 8 Si 0.885 3.115 9 H -0.280 1.280 10 H -0.296 1.296 11 H -0.268 1.268 12 N -0.514 5.514 13 C 0.032 3.968 14 C 0.110 3.890 15 C 0.183 3.817 16 N -0.436 5.436 17 S 0.155 5.845 18 C -0.133 4.133 19 C -0.089 4.089 20 C -0.083 4.083 21 C -0.130 4.130 22 C -0.034 4.034 23 C -0.116 4.116 24 H 0.046 0.954 25 H 0.028 0.972 26 H 0.058 0.942 27 H 0.264 0.736 28 H 0.048 0.952 29 H 0.081 0.919 30 H 0.022 0.978 31 H 0.053 0.947 32 H 0.092 0.908 33 H 0.129 0.871 34 H 0.132 0.868 35 H 0.132 0.868 36 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.381 3.908 -17.538 18.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.076 3.924 3 H 0.059 0.941 4 C -0.539 4.539 5 H 0.100 0.900 6 C -0.131 4.131 7 N -0.537 5.537 8 Si 0.716 3.284 9 H -0.208 1.208 10 H -0.224 1.224 11 H -0.193 1.193 12 N -0.238 5.238 13 C -0.116 4.116 14 C -0.023 4.023 15 C -0.007 4.007 16 N -0.248 5.248 17 S 0.310 5.690 18 C -0.253 4.253 19 C -0.112 4.112 20 C -0.106 4.106 21 C -0.150 4.150 22 C -0.056 4.056 23 C -0.128 4.128 24 H 0.065 0.935 25 H 0.047 0.953 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.066 0.934 29 H 0.100 0.900 30 H 0.040 0.960 31 H 0.071 0.929 32 H 0.110 0.890 33 H 0.147 0.853 34 H 0.150 0.850 35 H 0.149 0.851 36 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 4.517 2.212 -18.417 19.091 hybrid contribution -0.649 1.977 1.081 2.345 sum 3.868 4.189 -17.336 18.249 Atomic orbital electron populations 1.22850 1.01496 1.01354 0.98998 1.19823 0.88881 0.95234 0.88455 0.94075 1.20884 1.31609 1.13854 0.87584 0.89952 1.24902 0.95851 0.96587 0.95783 1.69877 1.45613 1.40279 0.97882 0.86903 0.80611 0.83897 0.76971 1.20768 1.22399 1.19321 1.62215 1.58790 1.02591 1.00240 1.22325 0.96348 0.90912 1.02015 1.20945 0.97139 0.97156 0.87107 1.22672 0.90945 0.91787 0.95305 1.75889 1.25054 1.16426 1.07414 1.84707 1.02482 1.45319 1.36518 1.23477 0.99993 1.01743 1.00104 1.19917 0.91017 0.99529 1.00704 1.21019 0.99366 0.94930 0.95269 1.20778 0.96116 1.00972 0.97138 1.20832 0.92440 0.94572 0.97758 1.20158 0.94365 1.01118 0.97112 0.93537 0.95253 0.92253 0.92594 0.93363 0.90008 0.95998 0.92886 0.88966 0.85270 0.85022 0.85056 0.84374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.00 7.92 37.16 0.29 -3.70 16 2 C 0.18 4.16 1.90 -68.86 -0.13 4.03 16 3 H 0.04 0.94 6.99 -51.93 -0.36 0.58 16 4 C -0.50 -13.61 8.49 -34.44 -0.29 -13.91 16 5 H 0.08 2.48 7.37 -52.48 -0.39 2.09 16 6 C 0.07 1.98 5.45 -17.82 -0.10 1.88 16 7 N -0.90 -26.92 13.96 55.43 0.77 -26.15 16 8 Si 0.89 21.29 24.37 -169.99 -4.14 17.15 16 9 H -0.28 -6.65 6.87 56.52 0.39 -6.26 16 10 H -0.30 -7.18 7.11 56.52 0.40 -6.78 16 11 H -0.27 -6.08 6.53 56.52 0.37 -5.71 16 12 N -0.51 -10.45 4.69 -237.72 -1.12 -11.57 16 13 C 0.03 0.65 8.44 60.07 0.51 1.16 16 14 C 0.11 1.87 4.81 -4.98 -0.02 1.84 16 15 C 0.18 3.02 5.62 -81.23 -0.46 2.57 16 16 N -0.44 -7.39 10.85 34.00 0.37 -7.02 16 17 S 0.16 2.23 23.86 -107.50 -2.56 -0.34 16 18 C -0.13 -1.83 6.71 -38.41 -0.26 -2.09 16 19 C -0.09 -0.97 10.02 -39.93 -0.40 -1.37 16 20 C -0.08 -0.79 10.00 -39.86 -0.40 -1.19 16 21 C -0.13 -1.36 9.92 -40.10 -0.40 -1.75 16 22 C -0.03 -0.44 9.72 -39.25 -0.38 -0.82 16 23 C -0.12 -1.74 6.04 -105.14 -0.64 -2.37 16 24 H 0.05 1.03 3.27 -51.93 -0.17 0.86 16 25 H 0.03 0.54 6.91 -51.93 -0.36 0.18 16 26 H 0.06 1.26 6.41 -51.93 -0.33 0.93 16 27 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 28 H 0.05 0.93 6.61 -51.93 -0.34 0.59 16 29 H 0.08 1.79 6.76 -51.93 -0.35 1.44 16 30 H 0.02 0.42 6.46 -51.93 -0.34 0.09 16 31 H 0.05 0.90 7.06 -51.93 -0.37 0.53 16 32 H 0.09 1.40 7.33 -51.93 -0.38 1.02 16 33 H 0.13 1.08 8.06 -52.48 -0.42 0.66 16 34 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 35 H 0.13 1.04 8.06 -52.48 -0.42 0.62 16 36 H 0.14 1.71 7.64 -52.48 -0.40 1.31 16 LS Contribution 298.58 15.07 4.50 4.50 Total: -1.00 -30.41 298.58 -9.09 -39.50 By element: Atomic # 1 Polarization: 3.89 SS G_CDS: -4.24 Total: -0.35 kcal Atomic # 6 Polarization: -13.06 SS G_CDS: -2.67 Total: -15.73 kcal Atomic # 7 Polarization: -44.76 SS G_CDS: 0.03 Total: -44.73 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.14 Total: 17.15 kcal Atomic # 16 Polarization: 2.23 SS G_CDS: -2.56 Total: -0.34 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -30.41 -9.09 -39.50 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595344891.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.605 kcal (2) G-P(sol) polarization free energy of solvation -30.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds