Wall clock time and date at job start Mon Mar 30 2020 01:27:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.46985 * 2 1 4 4 C 1.50696 * 109.47160 * 120.00088 * 2 1 3 5 5 H 1.08005 * 119.99725 * 119.99539 * 4 2 1 6 6 C 1.37878 * 120.00189 * 299.99829 * 4 2 1 7 7 N 1.31512 * 119.99750 * 180.02562 * 6 4 2 8 8 Si 1.86794 * 119.99818 * 359.97438 * 6 4 2 9 9 H 1.48504 * 109.46963 * 90.00024 * 8 6 4 10 10 H 1.48502 * 109.47084 * 209.99996 * 8 6 4 11 11 H 1.48500 * 109.47321 * 330.00380 * 8 6 4 12 12 N 1.46901 * 109.46538 * 240.00093 * 2 1 3 13 13 C 1.46902 * 111.00040 * 306.04362 * 12 2 1 14 14 C 1.46899 * 111.00103 * 70.00184 * 12 2 1 15 15 C 1.50703 * 109.47107 * 169.99758 * 14 12 2 16 16 N 1.28733 * 121.08584 * 90.02337 * 15 14 12 17 17 S 1.69386 * 108.98452 * 180.02562 * 16 15 14 18 18 C 1.76514 * 96.12017 * 0.02562 * 17 16 15 19 19 C 1.38784 * 133.55300 * 180.02562 * 18 17 16 20 20 C 1.36710 * 119.75781 * 179.97438 * 19 18 17 21 21 C 1.38973 * 120.15149 * 359.97438 * 20 19 18 22 22 C 1.36046 * 121.15792 * 359.97438 * 21 20 19 23 23 C 1.40805 * 105.51985 * 359.73856 * 18 17 16 24 24 H 1.08998 * 109.46803 * 299.99914 * 1 2 3 25 25 H 1.08991 * 109.47175 * 59.99483 * 1 2 3 26 26 H 1.08998 * 109.46985 * 179.97438 * 1 2 3 27 27 H 0.97008 * 119.99731 * 179.97438 * 7 6 4 28 28 H 1.09005 * 109.46528 * 183.95480 * 13 12 2 29 29 H 1.09000 * 109.46785 * 303.95569 * 13 12 2 30 30 H 1.08997 * 109.47044 * 63.96124 * 13 12 2 31 31 H 1.09002 * 109.47043 * 289.99738 * 14 12 2 32 32 H 1.09001 * 109.47354 * 49.99799 * 14 12 2 33 33 H 1.08006 * 120.12599 * 359.94715 * 19 18 17 34 34 H 1.07997 * 119.92946 * 179.97438 * 20 19 18 35 35 H 1.08003 * 119.42163 * 180.02562 * 21 20 19 36 36 H 1.08005 * 119.89121 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 2.1382 -0.8591 3.5564 8 14 0.6261 1.2798 2.6541 9 1 -0.8019 0.8745 2.6993 10 1 0.9774 1.9953 3.9071 11 1 0.8493 2.1773 1.4923 12 7 2.0196 -0.6925 -1.1995 13 6 1.4342 -2.0355 -1.3078 14 6 1.7528 0.0972 -2.4091 15 6 2.4772 -0.5163 -3.5795 16 7 1.9164 -1.4143 -4.3117 17 16 2.9963 -1.8870 -5.5280 18 6 4.3102 -0.8138 -5.0405 19 6 5.5866 -0.5800 -5.5329 20 6 6.3917 0.3403 -4.9214 21 6 5.9342 1.0397 -3.8111 22 6 4.6867 0.8285 -3.3110 23 6 3.8268 -0.1111 -3.9202 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.9042 -0.5275 4.4375 28 1 1.8663 -2.5520 -2.1649 29 1 1.6466 -2.5987 -0.3991 30 1 0.3555 -1.9520 -1.4399 31 1 0.6813 0.1053 -2.6087 32 1 2.1024 1.1189 -2.2604 33 1 5.9427 -1.1233 -6.3957 34 1 7.3855 0.5241 -5.3019 35 1 6.5799 1.7643 -3.3374 36 1 4.3519 1.3839 -2.4473 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595344891.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:50 Heat of formation + Delta-G solvation = 49.086454 kcal Electronic energy + Delta-G solvation = -18944.862135 eV Core-core repulsion = 16134.010780 eV Total energy + Delta-G solvation = -2810.851355 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 276.099 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.02612 -39.25475 -37.40789 -34.63406 -32.24197 -31.71095 -31.36150 -29.17533 -27.22394 -26.04416 -24.24837 -23.63156 -21.64329 -20.62883 -19.45167 -18.66708 -17.39017 -17.27003 -16.53685 -16.28767 -16.00727 -15.74153 -15.25120 -14.97417 -14.87900 -14.47940 -14.22840 -14.00246 -13.39541 -13.19754 -13.02480 -12.91718 -12.80551 -12.61337 -12.49259 -12.21383 -11.94384 -11.69631 -11.50137 -11.39854 -11.11320 -10.79461 -10.72583 -9.91131 -9.11860 -8.85657 -8.24709 -6.28017 -0.49114 0.25677 0.43203 0.75958 1.08725 1.34124 1.38585 1.49153 2.34823 2.68665 3.09181 3.21414 3.35104 3.57570 4.03447 4.14257 4.20743 4.33424 4.37618 4.41851 4.49745 4.54994 4.57104 4.58953 4.70868 4.76924 4.94769 5.00328 5.09848 5.14183 5.30585 5.39006 5.48095 5.59639 5.64912 5.89823 5.98239 6.24645 6.62481 6.77878 7.36090 8.92224 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.024719 B = 0.005056 C = 0.004585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.437501 B = 5536.441989 C = 6106.045287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.188 3.812 3 H 0.050 0.950 4 C -0.501 4.501 5 H 0.035 0.965 6 C 0.013 3.987 7 N -0.950 5.950 8 Si 0.949 3.051 9 H -0.273 1.273 10 H -0.300 1.300 11 H -0.239 1.239 12 N -0.526 5.526 13 C 0.045 3.955 14 C 0.113 3.887 15 C 0.174 3.826 16 N -0.468 5.468 17 S 0.158 5.842 18 C -0.145 4.145 19 C -0.093 4.093 20 C -0.069 4.069 21 C -0.124 4.124 22 C -0.053 4.053 23 C -0.144 4.144 24 H 0.040 0.960 25 H 0.062 0.938 26 H 0.051 0.949 27 H 0.265 0.735 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.029 0.971 31 H 0.057 0.943 32 H 0.111 0.889 33 H 0.156 0.844 34 H 0.174 0.826 35 H 0.161 0.839 36 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.203 6.130 -19.580 21.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.080 3.920 3 H 0.068 0.932 4 C -0.539 4.539 5 H 0.054 0.946 6 C -0.184 4.184 7 N -0.591 5.591 8 Si 0.776 3.224 9 H -0.199 1.199 10 H -0.228 1.228 11 H -0.163 1.163 12 N -0.250 5.250 13 C -0.103 4.103 14 C -0.019 4.019 15 C -0.016 4.016 16 N -0.280 5.280 17 S 0.313 5.687 18 C -0.266 4.266 19 C -0.116 4.116 20 C -0.091 4.091 21 C -0.143 4.143 22 C -0.075 4.075 23 C -0.155 4.155 24 H 0.059 0.941 25 H 0.080 0.920 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.047 0.953 31 H 0.075 0.925 32 H 0.129 0.871 33 H 0.173 0.827 34 H 0.191 0.809 35 H 0.179 0.821 36 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 5.338 4.436 -20.494 21.637 hybrid contribution -0.711 1.218 1.617 2.145 sum 4.627 5.653 -18.877 20.242 Atomic orbital electron populations 1.22739 0.99924 1.01366 1.00250 1.19633 0.89948 0.94902 0.87523 0.93222 1.21095 1.30457 1.12497 0.89885 0.94646 1.25755 0.97409 1.00022 0.95240 1.70043 1.47850 1.42604 0.98573 0.85862 0.78729 0.80143 0.77669 1.19910 1.22753 1.16288 1.62043 1.59140 1.02754 1.01071 1.22128 0.96754 0.90901 1.00533 1.20955 0.97636 0.97536 0.85785 1.22688 0.91819 0.91983 0.95123 1.75742 1.26714 1.17042 1.08533 1.84510 1.02817 1.45675 1.35732 1.23714 1.00930 1.01679 1.00234 1.20379 0.89866 0.99888 1.01461 1.21532 1.00625 0.92988 0.93979 1.21209 0.95269 1.00867 0.97004 1.21017 0.93482 0.94793 0.98252 1.20270 0.94195 1.02676 0.98376 0.94108 0.91958 0.93027 0.92604 0.92961 0.93000 0.95268 0.92542 0.87127 0.82658 0.80898 0.82142 0.84470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.46 7.92 71.98 0.57 -6.89 16 2 C 0.19 8.38 1.90 44.17 0.08 8.46 16 3 H 0.05 2.16 6.99 -2.39 -0.02 2.14 16 4 C -0.50 -27.93 8.49 25.60 0.22 -27.71 16 5 H 0.04 2.25 7.37 -2.91 -0.02 2.23 16 6 C 0.01 0.72 5.45 84.66 0.46 1.18 16 7 N -0.95 -58.82 13.96 21.45 0.30 -58.52 16 8 Si 0.95 43.35 24.37 68.60 1.67 45.02 16 9 H -0.27 -12.05 6.87 99.48 0.68 -11.37 16 10 H -0.30 -13.77 7.11 99.48 0.71 -13.06 16 11 H -0.24 -9.76 6.53 99.48 0.65 -9.11 16 12 N -0.53 -21.33 4.69 -906.02 -4.25 -25.59 16 13 C 0.05 1.86 8.44 127.69 1.08 2.94 16 14 C 0.11 3.74 4.81 85.56 0.41 4.15 16 15 C 0.17 5.66 5.62 44.74 0.25 5.91 16 16 N -0.47 -15.81 10.85 -46.34 -0.50 -16.31 16 17 S 0.16 4.46 23.86 -56.49 -1.35 3.11 16 18 C -0.15 -3.80 6.71 23.03 0.15 -3.64 16 19 C -0.09 -1.73 10.02 22.04 0.22 -1.51 16 20 C -0.07 -1.01 10.00 22.09 0.22 -0.79 16 21 C -0.12 -2.15 9.92 21.94 0.22 -1.94 16 22 C -0.05 -1.29 9.72 22.49 0.22 -1.07 16 23 C -0.14 -4.17 6.04 -20.20 -0.12 -4.29 16 24 H 0.04 1.70 3.27 -2.39 -0.01 1.69 16 25 H 0.06 2.11 6.91 -2.39 -0.02 2.09 16 26 H 0.05 2.14 6.41 -2.39 -0.02 2.13 16 27 H 0.26 15.39 8.31 -92.70 -0.77 14.62 16 28 H 0.05 2.08 6.61 -2.38 -0.02 2.06 16 29 H 0.05 2.40 6.76 -2.39 -0.02 2.38 16 30 H 0.03 1.13 6.46 -2.39 -0.02 1.12 16 31 H 0.06 1.81 7.06 -2.39 -0.02 1.80 16 32 H 0.11 3.17 7.33 -2.39 -0.02 3.15 16 33 H 0.16 2.01 8.06 -2.91 -0.02 1.98 16 34 H 0.17 1.14 8.06 -2.91 -0.02 1.11 16 35 H 0.16 1.83 8.06 -2.91 -0.02 1.80 16 36 H 0.14 3.21 7.64 -2.91 -0.02 3.19 16 Total: -1.00 -68.39 298.58 0.87 -67.52 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: 1.02 Total: 9.95 kcal Atomic # 6 Polarization: -29.18 SS G_CDS: 3.98 Total: -25.20 kcal Atomic # 7 Polarization: -95.96 SS G_CDS: -4.46 Total: -100.42 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 1.67 Total: 45.02 kcal Atomic # 16 Polarization: 4.46 SS G_CDS: -1.35 Total: 3.11 kcal Total: -68.39 0.87 -67.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595344891.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.610 kcal (2) G-P(sol) polarization free energy of solvation -68.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds