Wall clock time and date at job start Mon Mar 30 2020 01:27:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46813 * 2 1 4 4 C 1.50702 * 109.47093 * 120.00004 * 2 1 3 5 5 H 1.08003 * 119.99769 * 120.00271 * 4 2 1 6 6 C 1.37868 * 119.99983 * 300.00181 * 4 2 1 7 7 N 1.31519 * 120.00448 * 359.97438 * 6 4 2 8 8 Si 1.86807 * 120.00188 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47176 * 89.99381 * 8 6 4 10 10 H 1.48495 * 109.47439 * 209.99938 * 8 6 4 11 11 H 1.48500 * 109.46731 * 330.00116 * 8 6 4 12 12 N 1.46905 * 109.47102 * 240.00077 * 2 1 3 13 13 C 1.46901 * 110.99870 * 85.00132 * 12 2 1 14 14 C 1.53004 * 109.46916 * 180.02562 * 13 12 2 15 15 C 1.50703 * 109.46807 * 179.97438 * 14 13 12 16 16 N 1.28730 * 121.08376 * 269.71532 * 15 14 13 17 17 S 1.69392 * 108.98517 * 179.90416 * 16 15 14 18 18 C 1.76511 * 96.11790 * 0.31133 * 17 16 15 19 19 C 1.38788 * 133.55573 * 179.82985 * 18 17 16 20 20 C 1.36716 * 119.75284 * 179.97438 * 19 18 17 21 21 C 1.38964 * 120.15788 * 0.02562 * 20 19 18 22 22 C 1.36041 * 121.15844 * 0.02562 * 21 20 19 23 23 C 1.40805 * 105.52010 * 359.83019 * 18 17 16 24 24 H 1.09003 * 109.46813 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47105 * 300.00114 * 1 2 3 26 26 H 1.08996 * 109.46950 * 59.99838 * 1 2 3 27 27 H 0.96997 * 120.00331 * 179.97438 * 7 6 4 28 28 H 1.00901 * 110.99869 * 321.04843 * 12 2 1 29 29 H 1.09004 * 109.47031 * 299.99620 * 13 12 2 30 30 H 1.08995 * 109.47111 * 59.99900 * 13 12 2 31 31 H 1.08995 * 109.46615 * 299.99641 * 14 13 12 32 32 H 1.08996 * 109.46939 * 60.00272 * 14 13 12 33 33 H 1.07992 * 120.11811 * 359.97438 * 19 18 17 34 34 H 1.08002 * 119.92082 * 179.97438 * 20 19 18 35 35 H 1.08003 * 119.42293 * 180.02562 * 21 20 19 36 36 H 1.08006 * 119.89576 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3225 -1.1196 4.0080 9 1 3.6305 -0.5441 4.4118 10 1 1.3445 -0.9491 5.1123 11 1 2.4881 -2.5654 3.7122 12 7 2.0197 -0.6925 -1.1995 13 6 2.0825 0.2226 -2.3469 14 6 2.5951 -0.5332 -3.5745 15 6 2.6589 0.4055 -4.7518 16 7 1.6533 0.5492 -5.5426 17 16 2.0555 1.6699 -6.7474 18 6 3.6965 1.9797 -6.1760 19 6 4.7266 2.7956 -6.6226 20 6 5.9151 2.8189 -5.9473 21 6 6.0921 2.0283 -4.8182 22 6 5.0976 1.2198 -4.3621 23 6 3.8567 1.1716 -5.0342 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 0.7089 1.1613 3.4844 28 1 1.4495 -1.4979 -1.4101 29 1 1.0871 0.6163 -2.5526 30 1 2.7589 1.0462 -2.1182 31 1 3.5904 -0.9271 -3.3691 32 1 1.9183 -1.3564 -3.8030 33 1 4.5897 3.4099 -7.5002 34 1 6.7186 3.4525 -6.2926 35 1 7.0357 2.0562 -4.2936 36 1 5.2572 0.6142 -3.4821 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596045325.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:54 Heat of formation + Delta-G solvation = 42.095625 kcal Electronic energy + Delta-G solvation = -18151.934757 eV Core-core repulsion = 15340.780258 eV Total energy + Delta-G solvation = -2811.154500 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 276.099 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.09613 -37.29545 -35.94048 -32.95522 -31.45893 -30.64849 -30.42893 -27.35243 -25.13896 -23.82406 -23.11054 -22.16723 -20.28428 -19.78727 -18.62317 -16.49926 -16.30495 -15.58507 -15.34494 -14.93595 -14.72457 -14.50157 -14.08413 -13.70982 -13.45357 -12.88979 -12.43283 -12.36462 -12.10323 -11.81925 -11.58994 -11.50746 -11.10045 -10.90848 -10.84716 -10.71948 -10.50104 -10.36313 -10.11850 -9.98822 -9.80564 -9.13725 -9.01018 -8.35642 -7.96742 -7.28331 -5.97780 -4.01425 0.36859 0.99997 1.32777 1.75910 2.02759 3.33315 3.39535 3.43225 3.43871 4.16772 4.37232 4.45148 4.68333 4.91256 5.07607 5.17473 5.27932 5.29845 5.33787 5.44575 5.65825 5.72681 5.82934 5.99348 6.01346 6.17036 6.22422 6.40615 6.52470 6.68469 6.71187 6.85791 7.10361 7.35222 7.74542 7.87760 8.26493 8.50979 8.59887 9.05662 9.63965 11.09318 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.025712 B = 0.003724 C = 0.003424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.736837 B = 7516.715392 C = 8175.830045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.211 3.789 3 H 0.033 0.967 4 C -0.495 4.495 5 H 0.063 0.937 6 C 0.055 3.945 7 N -0.898 5.898 8 Si 0.898 3.102 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.682 5.682 13 C 0.070 3.930 14 C -0.055 4.055 15 C 0.172 3.828 16 N -0.438 5.438 17 S 0.161 5.839 18 C -0.133 4.133 19 C -0.087 4.087 20 C -0.082 4.082 21 C -0.127 4.127 22 C -0.042 4.042 23 C -0.127 4.127 24 H 0.028 0.972 25 H 0.089 0.911 26 H 0.005 0.995 27 H 0.259 0.741 28 H 0.326 0.674 29 H 0.023 0.977 30 H 0.067 0.933 31 H 0.096 0.904 32 H 0.085 0.915 33 H 0.131 0.869 34 H 0.134 0.866 35 H 0.133 0.867 36 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.700 3.193 -18.106 20.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.104 3.896 3 H 0.051 0.949 4 C -0.534 4.534 5 H 0.081 0.919 6 C -0.146 4.146 7 N -0.538 5.538 8 Si 0.726 3.274 9 H -0.208 1.208 10 H -0.214 1.214 11 H -0.199 1.199 12 N -0.312 5.312 13 C -0.062 4.062 14 C -0.098 4.098 15 C -0.018 4.018 16 N -0.249 5.249 17 S 0.316 5.684 18 C -0.253 4.253 19 C -0.110 4.110 20 C -0.105 4.105 21 C -0.148 4.148 22 C -0.064 4.064 23 C -0.139 4.139 24 H 0.047 0.953 25 H 0.107 0.893 26 H 0.024 0.976 27 H 0.069 0.931 28 H 0.143 0.857 29 H 0.042 0.958 30 H 0.086 0.914 31 H 0.115 0.885 32 H 0.103 0.897 33 H 0.149 0.851 34 H 0.151 0.849 35 H 0.151 0.849 36 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 7.203 3.396 -19.046 20.644 hybrid contribution 0.650 -0.252 1.577 1.724 sum 7.852 3.144 -17.469 19.409 Atomic orbital electron populations 1.22430 1.00658 0.99266 1.00528 1.19181 0.89670 0.94431 0.86345 0.94883 1.21150 1.30230 1.12464 0.89538 0.91857 1.24958 0.95325 0.95214 0.99064 1.69889 1.37284 1.23232 1.23347 0.86502 0.78429 0.80023 0.82445 1.20766 1.21447 1.19907 1.60835 1.58147 1.09014 1.03187 1.21780 0.98817 0.95907 0.89699 1.20588 1.04319 0.95696 0.89198 1.22736 0.87663 0.95554 0.95808 1.75874 1.26002 1.16072 1.06948 1.84786 1.04989 1.43591 1.35011 1.23519 1.00287 1.01761 0.99757 1.19958 0.91700 0.98621 1.00700 1.21058 0.96726 0.97883 0.94807 1.20803 0.99656 0.97111 0.97200 1.20865 0.90089 0.97122 0.98299 1.20251 0.96232 1.00046 0.97389 0.95260 0.89250 0.97622 0.93068 0.85718 0.95848 0.91431 0.88539 0.89675 0.85105 0.84856 0.84888 0.84212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.14 8.94 37.16 0.33 -3.80 16 2 C 0.21 5.30 2.57 -68.86 -0.18 5.12 16 3 H 0.03 0.91 7.80 -51.93 -0.40 0.51 16 4 C -0.49 -13.58 8.84 -34.44 -0.30 -13.89 16 5 H 0.06 1.74 7.81 -52.48 -0.41 1.33 16 6 C 0.05 1.52 5.30 -17.82 -0.09 1.42 16 7 N -0.90 -25.73 11.32 55.43 0.63 -25.10 16 8 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16 9 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 12 N -0.68 -14.09 6.23 -107.94 -0.67 -14.76 16 13 C 0.07 1.24 5.47 -3.82 -0.02 1.22 16 14 C -0.06 -0.80 5.75 -27.88 -0.16 -0.96 16 15 C 0.17 2.54 6.13 -81.23 -0.50 2.04 16 16 N -0.44 -6.92 11.84 34.00 0.40 -6.52 16 17 S 0.16 2.15 23.86 -107.50 -2.56 -0.41 16 18 C -0.13 -1.67 6.71 -38.41 -0.26 -1.93 16 19 C -0.09 -0.85 10.02 -39.93 -0.40 -1.25 16 20 C -0.08 -0.68 10.00 -39.86 -0.40 -1.08 16 21 C -0.13 -1.15 9.92 -40.10 -0.40 -1.55 16 22 C -0.04 -0.47 9.72 -39.25 -0.38 -0.85 16 23 C -0.13 -1.70 6.04 -105.14 -0.64 -2.33 16 24 H 0.03 0.68 8.13 -51.93 -0.42 0.25 16 25 H 0.09 2.41 6.07 -51.93 -0.32 2.10 16 26 H 0.00 0.11 7.45 -51.93 -0.39 -0.28 16 27 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 28 H 0.33 6.39 8.47 -39.29 -0.33 6.06 16 29 H 0.02 0.45 7.44 -51.93 -0.39 0.06 16 30 H 0.07 1.24 8.05 -51.93 -0.42 0.82 16 31 H 0.10 1.25 7.54 -51.93 -0.39 0.86 16 32 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 34 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 35 H 0.13 0.88 8.06 -52.48 -0.42 0.45 16 36 H 0.14 1.42 7.64 -52.48 -0.40 1.02 16 LS Contribution 316.57 15.07 4.77 4.77 Total: -1.00 -30.15 316.57 -10.55 -40.69 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -4.70 Total: 2.84 kcal Atomic # 6 Polarization: -14.44 SS G_CDS: -3.39 Total: -17.84 kcal Atomic # 7 Polarization: -46.74 SS G_CDS: 0.36 Total: -46.39 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: 2.15 SS G_CDS: -2.56 Total: -0.41 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -30.15 -10.55 -40.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596045325.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.790 kcal (2) G-P(sol) polarization free energy of solvation -30.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds