Wall clock time and date at job start Mon Mar 30 2020 01:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46813 * 2 1 4 4 C 1.50702 * 109.47093 * 120.00004 * 2 1 3 5 5 H 1.08003 * 119.99769 * 120.00271 * 4 2 1 6 6 C 1.37868 * 119.99983 * 300.00181 * 4 2 1 7 7 N 1.31519 * 120.00448 * 359.97438 * 6 4 2 8 8 Si 1.86807 * 120.00188 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47176 * 89.99381 * 8 6 4 10 10 H 1.48495 * 109.47439 * 209.99938 * 8 6 4 11 11 H 1.48500 * 109.46731 * 330.00116 * 8 6 4 12 12 N 1.46905 * 109.47102 * 240.00077 * 2 1 3 13 13 C 1.46901 * 110.99870 * 85.00132 * 12 2 1 14 14 C 1.53004 * 109.46916 * 180.02562 * 13 12 2 15 15 C 1.50703 * 109.46807 * 179.97438 * 14 13 12 16 16 N 1.28730 * 121.08376 * 269.71532 * 15 14 13 17 17 S 1.69392 * 108.98517 * 179.90416 * 16 15 14 18 18 C 1.76511 * 96.11790 * 0.31133 * 17 16 15 19 19 C 1.38788 * 133.55573 * 179.82985 * 18 17 16 20 20 C 1.36716 * 119.75284 * 179.97438 * 19 18 17 21 21 C 1.38964 * 120.15788 * 0.02562 * 20 19 18 22 22 C 1.36041 * 121.15844 * 0.02562 * 21 20 19 23 23 C 1.40805 * 105.52010 * 359.83019 * 18 17 16 24 24 H 1.09003 * 109.46813 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47105 * 300.00114 * 1 2 3 26 26 H 1.08996 * 109.46950 * 59.99838 * 1 2 3 27 27 H 0.96997 * 120.00331 * 179.97438 * 7 6 4 28 28 H 1.00901 * 110.99869 * 321.04843 * 12 2 1 29 29 H 1.09004 * 109.47031 * 299.99620 * 13 12 2 30 30 H 1.08995 * 109.47111 * 59.99900 * 13 12 2 31 31 H 1.08995 * 109.46615 * 299.99641 * 14 13 12 32 32 H 1.08996 * 109.46939 * 60.00272 * 14 13 12 33 33 H 1.07992 * 120.11811 * 359.97438 * 19 18 17 34 34 H 1.08002 * 119.92082 * 179.97438 * 20 19 18 35 35 H 1.08003 * 119.42293 * 180.02562 * 21 20 19 36 36 H 1.08006 * 119.89576 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3225 -1.1196 4.0080 9 1 3.6305 -0.5441 4.4118 10 1 1.3445 -0.9491 5.1123 11 1 2.4881 -2.5654 3.7122 12 7 2.0197 -0.6925 -1.1995 13 6 2.0825 0.2226 -2.3469 14 6 2.5951 -0.5332 -3.5745 15 6 2.6589 0.4055 -4.7518 16 7 1.6533 0.5492 -5.5426 17 16 2.0555 1.6699 -6.7474 18 6 3.6965 1.9797 -6.1760 19 6 4.7266 2.7956 -6.6226 20 6 5.9151 2.8189 -5.9473 21 6 6.0921 2.0283 -4.8182 22 6 5.0976 1.2198 -4.3621 23 6 3.8567 1.1716 -5.0342 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 0.7089 1.1613 3.4844 28 1 1.4495 -1.4979 -1.4101 29 1 1.0871 0.6163 -2.5526 30 1 2.7589 1.0462 -2.1182 31 1 3.5904 -0.9271 -3.3691 32 1 1.9183 -1.3564 -3.8030 33 1 4.5897 3.4099 -7.5002 34 1 6.7186 3.4525 -6.2926 35 1 7.0357 2.0562 -4.2936 36 1 5.2572 0.6142 -3.4821 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596045325.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:53 Heat of formation + Delta-G solvation = 24.149982 kcal Electronic energy + Delta-G solvation = -18152.712939 eV Core-core repulsion = 15340.780258 eV Total energy + Delta-G solvation = -2811.932681 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 276.099 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.99794 -38.46429 -37.49777 -34.80354 -32.62186 -31.83141 -31.44629 -29.01681 -27.23845 -24.94468 -24.00261 -23.33330 -22.17476 -20.93900 -19.52553 -18.34752 -17.35906 -16.83997 -16.52914 -16.35826 -16.02399 -15.64392 -15.28034 -15.09973 -14.77638 -14.31393 -14.01562 -13.54639 -13.40584 -13.11169 -12.94403 -12.87719 -12.68807 -12.56930 -12.45678 -12.19418 -12.01123 -11.86414 -11.72083 -11.50680 -11.06396 -10.79941 -10.47470 -9.97971 -9.04563 -8.92649 -8.08112 -6.19765 -0.53798 0.20512 0.38098 0.72636 1.05250 1.46294 1.46621 1.57711 2.46107 2.64792 3.16838 3.20788 3.47639 3.73141 4.00629 4.02807 4.13940 4.29565 4.38177 4.42123 4.50842 4.65790 4.70435 4.77416 4.86838 4.95649 4.99141 5.08348 5.12160 5.28333 5.38685 5.44824 5.60415 5.68875 5.80212 5.85048 6.25388 6.59835 6.78756 6.94630 7.50392 8.97887 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.025712 B = 0.003724 C = 0.003424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.736837 B = 7516.715392 C = 8175.830045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.215 3.785 3 H 0.001 0.999 4 C -0.513 4.513 5 H 0.061 0.939 6 C 0.007 3.993 7 N -0.926 5.926 8 Si 0.963 3.037 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.267 1.267 12 N -0.678 5.678 13 C 0.079 3.921 14 C -0.043 4.043 15 C 0.167 3.833 16 N -0.476 5.476 17 S 0.154 5.846 18 C -0.145 4.145 19 C -0.093 4.093 20 C -0.068 4.068 21 C -0.122 4.122 22 C -0.056 4.056 23 C -0.154 4.154 24 H 0.035 0.965 25 H 0.062 0.938 26 H 0.017 0.983 27 H 0.260 0.740 28 H 0.335 0.665 29 H 0.007 0.993 30 H 0.059 0.941 31 H 0.113 0.887 32 H 0.088 0.912 33 H 0.155 0.845 34 H 0.174 0.826 35 H 0.163 0.837 36 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.992 3.266 -18.652 21.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.106 3.894 3 H 0.019 0.981 4 C -0.551 4.551 5 H 0.079 0.921 6 C -0.191 4.191 7 N -0.566 5.566 8 Si 0.789 3.211 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.191 1.191 12 N -0.308 5.308 13 C -0.052 4.052 14 C -0.085 4.085 15 C -0.023 4.023 16 N -0.287 5.287 17 S 0.309 5.691 18 C -0.265 4.265 19 C -0.116 4.116 20 C -0.090 4.090 21 C -0.142 4.142 22 C -0.079 4.079 23 C -0.165 4.165 24 H 0.054 0.946 25 H 0.081 0.919 26 H 0.036 0.964 27 H 0.069 0.931 28 H 0.152 0.848 29 H 0.025 0.975 30 H 0.077 0.923 31 H 0.131 0.869 32 H 0.107 0.893 33 H 0.173 0.827 34 H 0.191 0.809 35 H 0.181 0.819 36 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 9.499 3.456 -19.611 22.062 hybrid contribution 0.036 -0.183 1.675 1.685 sum 9.534 3.273 -17.935 20.574 Atomic orbital electron populations 1.22258 1.00319 0.99349 0.99773 1.18954 0.89835 0.92849 0.87722 0.98083 1.21446 1.30406 1.12558 0.90725 0.92116 1.25757 0.95422 0.95862 1.02053 1.70026 1.38146 1.24447 1.23991 0.85475 0.77880 0.79141 0.78622 1.20186 1.21219 1.19105 1.60691 1.57757 1.09342 1.02963 1.21674 0.97900 0.95597 0.90020 1.20418 1.05085 0.95311 0.87699 1.22831 0.88274 0.95641 0.95552 1.75758 1.27187 1.17603 1.08146 1.84594 1.06518 1.43367 1.34580 1.23741 1.00154 1.02780 0.99863 1.20399 0.91385 0.98169 1.01615 1.21562 0.96911 0.96984 0.93572 1.21243 1.00046 0.95710 0.97201 1.21078 0.89937 0.98174 0.98670 1.20365 0.96658 1.00920 0.98560 0.94620 0.91901 0.96380 0.93055 0.84821 0.97481 0.92252 0.86866 0.89340 0.82698 0.80879 0.81938 0.83841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.80 8.94 71.98 0.64 -7.16 16 2 C 0.22 10.97 2.57 44.17 0.11 11.08 16 3 H 0.00 0.07 7.80 -2.39 -0.02 0.05 16 4 C -0.51 -28.25 8.84 25.60 0.23 -28.03 16 5 H 0.06 3.31 7.81 -2.91 -0.02 3.29 16 6 C 0.01 0.38 5.30 84.65 0.45 0.83 16 7 N -0.93 -53.72 11.32 21.44 0.24 -53.48 16 8 Si 0.96 43.59 29.54 68.60 2.03 45.62 16 9 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 10 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 11 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 12 N -0.68 -28.10 6.23 -495.42 -3.09 -31.19 16 13 C 0.08 2.87 5.47 86.30 0.47 3.34 16 14 C -0.04 -1.22 5.75 29.85 0.17 -1.05 16 15 C 0.17 4.96 6.13 44.74 0.27 5.23 16 16 N -0.48 -15.40 11.84 -46.34 -0.55 -15.95 16 17 S 0.15 4.17 23.86 -56.49 -1.35 2.82 16 18 C -0.15 -3.51 6.71 23.03 0.15 -3.36 16 19 C -0.09 -1.56 10.02 22.04 0.22 -1.34 16 20 C -0.07 -0.86 10.00 22.09 0.22 -0.64 16 21 C -0.12 -1.81 9.92 21.93 0.22 -1.59 16 22 C -0.06 -1.17 9.72 22.49 0.22 -0.95 16 23 C -0.15 -4.02 6.04 -20.20 -0.12 -4.14 16 24 H 0.03 1.66 8.13 -2.39 -0.02 1.64 16 25 H 0.06 3.46 6.07 -2.39 -0.01 3.45 16 26 H 0.02 0.80 7.45 -2.39 -0.02 0.78 16 27 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 28 H 0.33 13.00 8.47 -89.69 -0.76 12.24 16 29 H 0.01 0.28 7.44 -2.39 -0.02 0.26 16 30 H 0.06 2.23 8.05 -2.39 -0.02 2.21 16 31 H 0.11 2.84 7.54 -2.39 -0.02 2.82 16 32 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 33 H 0.16 1.78 8.06 -2.91 -0.02 1.75 16 34 H 0.17 0.83 8.06 -2.91 -0.02 0.81 16 35 H 0.16 1.43 8.06 -2.91 -0.02 1.40 16 36 H 0.14 2.75 7.64 -2.91 -0.02 2.73 16 Total: -1.00 -65.81 316.57 0.88 -64.94 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: 0.33 Total: 15.00 kcal Atomic # 6 Polarization: -31.02 SS G_CDS: 3.26 Total: -27.76 kcal Atomic # 7 Polarization: -97.22 SS G_CDS: -3.39 Total: -100.61 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Atomic # 16 Polarization: 4.17 SS G_CDS: -1.35 Total: 2.82 kcal Total: -65.81 0.88 -64.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596045325.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.087 kcal (2) G-P(sol) polarization free energy of solvation -65.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds