Wall clock time and date at job start Mon Mar 30 2020 01:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 119.99544 * 2 1 4 4 H 1.48506 * 109.46905 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47478 * 300.00327 * 3 2 1 6 6 H 1.48499 * 109.47015 * 60.00434 * 3 2 1 7 7 C 1.37875 * 120.00263 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99809 * 158.08611 * 7 2 1 9 9 C 1.50700 * 119.99900 * 338.09658 * 7 2 1 10 10 C 1.52997 * 115.54920 * 324.23654 * 9 7 2 11 11 O 1.42897 * 109.47466 * 279.87096 * 10 9 7 12 12 C 1.35996 * 116.99895 * 180.65317 * 11 10 9 13 13 C 1.38639 * 120.01275 * 5.29971 * 12 11 10 14 14 C 1.38211 * 120.05000 * 179.74868 * 13 12 11 15 15 C 1.38200 * 120.15105 * 0.57772 * 14 13 12 16 16 C 1.38804 * 120.16093 * 359.75088 * 15 14 13 17 17 C 1.38815 * 119.85640 * 359.86532 * 16 15 14 18 18 O 1.36201 * 120.80001 * 180.42742 * 17 16 15 19 19 C 1.43172 * 116.71550 * 342.69064 * 18 17 16 20 20 C 1.53471 * 108.24580 * 46.13238 * 19 18 17 21 21 O 1.36116 * 119.36251 * 179.69023 * 16 15 14 22 22 C 1.52997 * 117.51995 * 109.94806 * 9 7 2 23 23 C 1.52999 * 60.00330 * 107.47954 * 22 9 7 24 24 H 0.96993 * 120.00255 * 5.28251 * 1 2 3 25 25 H 1.09002 * 109.47172 * 159.87010 * 10 9 7 26 26 H 1.09002 * 109.46969 * 39.87397 * 10 9 7 27 27 H 1.07996 * 119.97722 * 359.97438 * 13 12 11 28 28 H 1.07997 * 119.92557 * 180.30221 * 14 13 12 29 29 H 1.07997 * 119.92328 * 179.73043 * 15 14 13 30 30 H 1.09001 * 109.70762 * 286.43947 * 19 18 17 31 31 H 1.09002 * 109.74650 * 165.84160 * 19 18 17 32 32 H 1.09002 * 109.70990 * 180.64682 * 20 19 18 33 33 H 1.09001 * 109.74508 * 60.03208 * 20 19 18 34 34 H 1.09005 * 117.49518 * 214.96891 * 22 9 7 35 35 H 1.08993 * 117.50236 * 359.97438 * 22 9 7 36 36 H 1.08999 * 117.49431 * 252.51275 * 23 22 9 37 37 H 1.08996 * 117.52239 * 107.47697 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8902 2.3966 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0261 -1.2276 -0.3496 9 6 1.3327 -2.4522 0.4858 10 6 0.3641 -2.2729 1.6564 11 8 1.1023 -2.1917 2.8773 12 6 0.3854 -2.0440 4.0235 13 6 -0.9998 -2.0890 3.9858 14 6 -1.7289 -1.9442 5.1509 15 6 -1.0809 -1.7423 6.3548 16 6 0.3054 -1.6892 6.4003 17 6 1.0414 -1.8421 5.2333 18 8 2.4027 -1.8019 5.2571 19 6 3.0095 -1.2286 6.4202 20 6 2.3184 -1.8123 7.6600 21 8 0.9266 -1.4832 7.5938 22 6 0.9919 -3.5196 -0.5560 23 6 2.1395 -3.7511 0.4291 24 1 -0.4850 0.8364 -0.0773 25 1 -0.3160 -3.1236 1.6990 26 1 -0.2090 -1.3563 1.5167 27 1 -1.5093 -2.2410 3.0458 28 1 -2.8077 -1.9845 5.1199 29 1 -1.6545 -1.6253 7.2624 30 1 2.8836 -0.1459 6.4047 31 1 4.0711 -1.4747 6.4410 32 1 2.7554 -1.3822 8.5612 33 1 2.4398 -2.8955 7.6734 34 1 0.0775 -4.0941 -0.4074 35 1 1.2533 -3.3118 -1.5936 36 1 3.1560 -3.6955 0.0396 37 1 1.9804 -4.4775 1.2260 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596270220.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:37 Heat of formation + Delta-G solvation = -51.448515 kcal Electronic energy + Delta-G solvation = -21673.698897 eV Core-core repulsion = 18383.442397 eV Total energy + Delta-G solvation = -3290.256500 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.00266 -38.79664 -36.98424 -36.76395 -35.42744 -32.24038 -31.05877 -29.39789 -28.25093 -26.41094 -25.37970 -24.49861 -22.01579 -21.15039 -20.84456 -19.12382 -18.58278 -17.31960 -17.24263 -16.24212 -15.81260 -15.36277 -15.00005 -14.73192 -14.40006 -14.33479 -14.21384 -14.01703 -13.50178 -13.05010 -12.85051 -12.27051 -11.76757 -11.74285 -11.20220 -11.16371 -10.92914 -10.90988 -10.67096 -10.45679 -10.42087 -10.29588 -9.93666 -9.46931 -9.12165 -8.75110 -8.09797 -7.91904 -7.41450 -6.16280 -4.08977 1.56721 1.74406 3.17866 3.25598 3.35755 3.41267 3.45351 3.87543 4.07847 4.35239 4.38931 4.86227 4.91967 4.94597 5.11584 5.23481 5.30454 5.49099 5.53646 5.59773 5.65027 5.84270 6.00154 6.20875 6.28384 6.39574 6.45919 6.64239 6.69285 6.71313 6.80549 6.89335 6.99148 7.13979 7.30840 7.39394 7.60272 7.87813 8.29863 8.36324 8.82376 9.46071 10.88057 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.017474 B = 0.006032 C = 0.005646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.983066 B = 4640.517623 C = 4958.024524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.073 3.927 3 Si 0.889 3.111 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.281 1.281 7 C -0.486 4.486 8 H 0.065 0.935 9 C 0.051 3.949 10 C 0.084 3.916 11 O -0.288 6.288 12 C 0.164 3.836 13 C -0.212 4.212 14 C -0.074 4.074 15 C -0.170 4.170 16 C 0.080 3.920 17 C 0.003 3.997 18 O -0.290 6.290 19 C 0.019 3.981 20 C 0.021 3.979 21 O -0.308 6.308 22 C -0.192 4.192 23 C -0.200 4.200 24 H 0.264 0.736 25 H 0.027 0.973 26 H 0.115 0.885 27 H 0.140 0.860 28 H 0.130 0.870 29 H 0.128 0.872 30 H 0.073 0.927 31 H 0.118 0.882 32 H 0.117 0.883 33 H 0.075 0.925 34 H 0.065 0.935 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.242 -3.196 13.102 13.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.130 4.130 3 Si 0.716 3.284 4 H -0.194 1.194 5 H -0.211 1.211 6 H -0.206 1.206 7 C -0.523 4.523 8 H 0.083 0.917 9 C 0.050 3.950 10 C 0.010 3.990 11 O -0.200 6.200 12 C 0.115 3.885 13 C -0.231 4.231 14 C -0.092 4.092 15 C -0.189 4.189 16 C 0.035 3.965 17 C -0.042 4.042 18 O -0.204 6.204 19 C -0.057 4.057 20 C -0.055 4.055 21 O -0.223 6.223 22 C -0.230 4.230 23 C -0.237 4.237 24 H 0.074 0.926 25 H 0.045 0.955 26 H 0.132 0.868 27 H 0.157 0.843 28 H 0.148 0.852 29 H 0.146 0.854 30 H 0.091 0.909 31 H 0.136 0.864 32 H 0.135 0.865 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.102 0.898 36 H 0.096 0.904 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.123 -3.067 13.137 13.491 hybrid contribution 0.390 0.849 -0.007 0.934 sum 0.267 -2.218 13.130 13.319 Atomic orbital electron populations 1.69830 1.06258 1.27182 1.48147 1.24942 0.94690 0.99313 0.94061 0.86579 0.80789 0.83343 0.77663 1.19435 1.21053 1.20644 1.20496 0.98771 0.90362 1.42629 0.91682 1.18785 0.95609 0.88886 0.91693 1.22901 0.94110 1.02496 0.79498 1.86227 1.35759 1.85193 1.12800 1.18363 0.89723 0.94786 0.85650 1.21180 0.92027 1.09633 1.00266 1.20642 0.99575 0.98011 0.91003 1.20160 0.90363 1.09303 0.99030 1.18524 0.92269 1.02591 0.83109 1.18049 0.83186 1.11479 0.91517 1.86488 1.15702 1.78074 1.40152 1.23559 0.98744 0.98570 0.84847 1.23606 0.80524 1.01307 1.00072 1.86274 1.23744 1.82362 1.29925 1.22999 0.97458 1.06060 0.96456 1.22801 0.95900 1.02960 1.02069 0.92568 0.95459 0.86760 0.84266 0.85223 0.85358 0.90894 0.86407 0.86502 0.90658 0.91613 0.89828 0.90388 0.91158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.17 11.14 55.43 0.62 -23.55 16 2 C 0.07 1.99 5.03 -17.82 -0.09 1.90 16 3 Si 0.89 21.33 29.59 -169.99 -5.03 16.30 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.49 -13.49 8.98 -34.44 -0.31 -13.80 16 8 H 0.07 1.81 7.91 -52.49 -0.42 1.40 16 9 C 0.05 1.29 1.98 -155.66 -0.31 0.98 16 10 C 0.08 2.02 4.41 37.16 0.16 2.19 16 11 O -0.29 -6.98 9.87 -35.00 -0.35 -7.32 16 12 C 0.16 3.46 6.69 -39.11 -0.26 3.20 16 13 C -0.21 -3.89 9.05 -39.44 -0.36 -4.25 16 14 C -0.07 -1.13 10.04 -39.61 -0.40 -1.53 16 15 C -0.17 -2.59 9.96 -39.39 -0.39 -2.99 16 16 C 0.08 1.36 6.49 -39.16 -0.25 1.11 16 17 C 0.00 0.06 6.50 -39.05 -0.25 -0.20 16 18 O -0.29 -5.52 10.18 -45.21 -0.46 -5.98 16 19 C 0.02 0.25 7.26 37.40 0.27 0.52 16 20 C 0.02 0.23 7.26 37.40 0.27 0.50 16 21 O -0.31 -4.60 10.42 -32.94 -0.34 -4.94 16 22 C -0.19 -4.36 9.88 -26.73 -0.26 -4.62 16 23 C -0.20 -4.51 9.93 -26.73 -0.27 -4.78 16 24 H 0.26 6.91 8.32 -40.82 -0.34 6.57 16 25 H 0.03 0.60 7.19 -51.93 -0.37 0.23 16 26 H 0.12 2.98 5.20 -51.93 -0.27 2.71 16 27 H 0.14 2.50 6.29 -52.49 -0.33 2.17 16 28 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 29 H 0.13 1.63 8.06 -52.49 -0.42 1.20 16 30 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.12 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.12 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.07 1.37 8.08 -51.93 -0.42 0.95 16 35 H 0.08 1.89 8.14 -51.93 -0.42 1.47 16 36 H 0.08 1.71 8.14 -51.93 -0.42 1.29 16 37 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 LS Contribution 312.10 15.07 4.70 4.70 Total: -1.00 -30.89 312.10 -8.05 -38.95 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -4.75 Total: 3.59 kcal Atomic # 6 Polarization: -19.29 SS G_CDS: -2.45 Total: -21.74 kcal Atomic # 7 Polarization: -24.17 SS G_CDS: 0.62 Total: -23.55 kcal Atomic # 8 Polarization: -17.10 SS G_CDS: -1.15 Total: -18.25 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.03 Total: 16.30 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -30.89 -8.05 -38.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596270220.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.501 kcal (2) G-P(sol) polarization free energy of solvation -30.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds