Wall clock time and date at job start Mon Mar 30 2020 01:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 119.99544 * 2 1 4 4 H 1.48506 * 109.46905 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47478 * 300.00327 * 3 2 1 6 6 H 1.48499 * 109.47015 * 60.00434 * 3 2 1 7 7 C 1.37875 * 120.00263 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99809 * 158.08611 * 7 2 1 9 9 C 1.50700 * 119.99900 * 338.09658 * 7 2 1 10 10 C 1.52997 * 115.54920 * 324.23654 * 9 7 2 11 11 O 1.42897 * 109.47466 * 279.87096 * 10 9 7 12 12 C 1.35996 * 116.99895 * 180.65317 * 11 10 9 13 13 C 1.38639 * 120.01275 * 5.29971 * 12 11 10 14 14 C 1.38211 * 120.05000 * 179.74868 * 13 12 11 15 15 C 1.38200 * 120.15105 * 0.57772 * 14 13 12 16 16 C 1.38804 * 120.16093 * 359.75088 * 15 14 13 17 17 C 1.38815 * 119.85640 * 359.86532 * 16 15 14 18 18 O 1.36201 * 120.80001 * 180.42742 * 17 16 15 19 19 C 1.43172 * 116.71550 * 342.69064 * 18 17 16 20 20 C 1.53471 * 108.24580 * 46.13238 * 19 18 17 21 21 O 1.36116 * 119.36251 * 179.69023 * 16 15 14 22 22 C 1.52997 * 117.51995 * 109.94806 * 9 7 2 23 23 C 1.52999 * 60.00330 * 107.47954 * 22 9 7 24 24 H 0.96993 * 120.00255 * 5.28251 * 1 2 3 25 25 H 1.09002 * 109.47172 * 159.87010 * 10 9 7 26 26 H 1.09002 * 109.46969 * 39.87397 * 10 9 7 27 27 H 1.07996 * 119.97722 * 359.97438 * 13 12 11 28 28 H 1.07997 * 119.92557 * 180.30221 * 14 13 12 29 29 H 1.07997 * 119.92328 * 179.73043 * 15 14 13 30 30 H 1.09001 * 109.70762 * 286.43947 * 19 18 17 31 31 H 1.09002 * 109.74650 * 165.84160 * 19 18 17 32 32 H 1.09002 * 109.70990 * 180.64682 * 20 19 18 33 33 H 1.09001 * 109.74508 * 60.03208 * 20 19 18 34 34 H 1.09005 * 117.49518 * 214.96891 * 22 9 7 35 35 H 1.08993 * 117.50236 * 359.97438 * 22 9 7 36 36 H 1.08999 * 117.49431 * 252.51275 * 23 22 9 37 37 H 1.08996 * 117.52239 * 107.47697 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8902 2.3966 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0261 -1.2276 -0.3496 9 6 1.3327 -2.4522 0.4858 10 6 0.3641 -2.2729 1.6564 11 8 1.1023 -2.1917 2.8773 12 6 0.3854 -2.0440 4.0235 13 6 -0.9998 -2.0890 3.9858 14 6 -1.7289 -1.9442 5.1509 15 6 -1.0809 -1.7423 6.3548 16 6 0.3054 -1.6892 6.4003 17 6 1.0414 -1.8421 5.2333 18 8 2.4027 -1.8019 5.2571 19 6 3.0095 -1.2286 6.4202 20 6 2.3184 -1.8123 7.6600 21 8 0.9266 -1.4832 7.5938 22 6 0.9919 -3.5196 -0.5560 23 6 2.1395 -3.7511 0.4291 24 1 -0.4850 0.8364 -0.0773 25 1 -0.3160 -3.1236 1.6990 26 1 -0.2090 -1.3563 1.5167 27 1 -1.5093 -2.2410 3.0458 28 1 -2.8077 -1.9845 5.1199 29 1 -1.6545 -1.6253 7.2624 30 1 2.8836 -0.1459 6.4047 31 1 4.0711 -1.4747 6.4410 32 1 2.7554 -1.3822 8.5612 33 1 2.4398 -2.8955 7.6734 34 1 0.0775 -4.0941 -0.4074 35 1 1.2533 -3.3118 -1.5936 36 1 3.1560 -3.6955 0.0396 37 1 1.9804 -4.4775 1.2260 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596270220.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:37 Heat of formation + Delta-G solvation = -69.238720 kcal Electronic energy + Delta-G solvation = -21674.470339 eV Core-core repulsion = 18383.442397 eV Total energy + Delta-G solvation = -3291.027941 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.24456 -40.32398 -38.39480 -38.21018 -37.00732 -34.29299 -32.18288 -30.78106 -29.47039 -28.21849 -27.33531 -25.66916 -23.43236 -22.91735 -22.11188 -20.95420 -19.89283 -18.71669 -18.62608 -17.93132 -17.26215 -16.96337 -16.53056 -16.16979 -15.96593 -15.71798 -15.55936 -15.25978 -15.07116 -14.68679 -14.12242 -13.80580 -13.54249 -13.01763 -12.97551 -12.91273 -12.57524 -12.32490 -12.23643 -12.09634 -12.01933 -11.69212 -11.48906 -11.32497 -11.02476 -10.66473 -10.05843 -9.20745 -8.87614 -8.21373 -6.19771 0.25579 0.38943 1.32890 1.38892 1.49105 2.04195 2.26621 2.35524 2.40162 2.73065 2.92621 3.38461 3.62465 3.84279 3.93832 3.96101 4.11939 4.19293 4.22742 4.35584 4.40499 4.44377 4.54460 4.58784 4.65915 4.78143 4.90007 4.96430 5.07681 5.15573 5.21168 5.42631 5.46255 5.50155 5.61117 5.82182 5.92418 6.29692 6.33337 6.70796 6.75720 7.36165 8.81980 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.017474 B = 0.006032 C = 0.005646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.983066 B = 4640.517623 C = 4958.024524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.034 3.966 3 Si 0.942 3.058 4 H -0.271 1.271 5 H -0.272 1.272 6 H -0.283 1.283 7 C -0.511 4.511 8 H 0.051 0.949 9 C 0.011 3.989 10 C 0.099 3.901 11 O -0.318 6.318 12 C 0.117 3.883 13 C -0.221 4.221 14 C -0.064 4.064 15 C -0.160 4.160 16 C 0.078 3.922 17 C -0.016 4.016 18 O -0.326 6.326 19 C 0.007 3.993 20 C 0.020 3.980 21 O -0.311 6.311 22 C -0.179 4.179 23 C -0.186 4.186 24 H 0.267 0.733 25 H 0.040 0.960 26 H 0.090 0.910 27 H 0.135 0.865 28 H 0.170 0.830 29 H 0.163 0.837 30 H 0.070 0.930 31 H 0.148 0.852 32 H 0.162 0.838 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.761 -3.179 15.236 15.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.167 4.167 3 Si 0.767 3.233 4 H -0.195 1.195 5 H -0.197 1.197 6 H -0.209 1.209 7 C -0.548 4.548 8 H 0.070 0.930 9 C 0.011 3.989 10 C 0.025 3.975 11 O -0.231 6.231 12 C 0.070 3.930 13 C -0.240 4.240 14 C -0.082 4.082 15 C -0.178 4.178 16 C 0.033 3.967 17 C -0.061 4.061 18 O -0.242 6.242 19 C -0.067 4.067 20 C -0.054 4.054 21 O -0.226 6.226 22 C -0.217 4.217 23 C -0.223 4.223 24 H 0.076 0.924 25 H 0.058 0.942 26 H 0.108 0.892 27 H 0.152 0.848 28 H 0.187 0.813 29 H 0.181 0.819 30 H 0.089 0.911 31 H 0.166 0.834 32 H 0.179 0.821 33 H 0.100 0.900 34 H 0.103 0.897 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.638 -3.054 15.284 15.599 hybrid contribution 0.582 0.834 -0.519 1.142 sum -0.056 -2.220 14.765 14.931 Atomic orbital electron populations 1.69909 1.07013 1.27796 1.48447 1.25539 0.95475 1.01769 0.93942 0.85759 0.79573 0.80152 0.77798 1.19508 1.19716 1.20910 1.20702 0.98453 0.92196 1.43468 0.93030 1.18969 0.97514 0.89143 0.93299 1.22544 0.93639 1.01637 0.79718 1.86146 1.36853 1.86599 1.13532 1.18827 0.91048 0.97825 0.85270 1.21314 0.91245 1.10013 1.01467 1.21066 1.01360 0.96071 0.89737 1.20652 0.89926 1.06965 1.00269 1.18757 0.93038 1.01860 0.83078 1.18305 0.83802 1.12069 0.91931 1.86413 1.15793 1.78763 1.43189 1.23964 1.00302 0.98428 0.84054 1.23944 0.78603 1.02064 1.00817 1.86266 1.25569 1.82197 1.28577 1.22979 0.98296 1.04630 0.95806 1.22786 0.95875 1.01494 1.02121 0.92373 0.94234 0.89216 0.84760 0.81278 0.81923 0.91147 0.83429 0.82061 0.89995 0.89671 0.90178 0.90276 0.89883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -50.30 11.14 21.45 0.24 -50.06 16 2 C 0.03 1.89 5.03 84.65 0.43 2.32 16 3 Si 0.94 44.53 29.59 68.60 2.03 46.56 16 4 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 5 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 6 H -0.28 -13.39 7.11 99.48 0.71 -12.69 16 7 C -0.51 -29.19 8.98 25.60 0.23 -28.96 16 8 H 0.05 2.97 7.91 -2.91 -0.02 2.95 16 9 C 0.01 0.58 1.98 -52.93 -0.10 0.48 16 10 C 0.10 4.92 4.41 71.98 0.32 5.24 16 11 O -0.32 -16.05 9.87 -78.90 -0.78 -16.83 16 12 C 0.12 5.10 6.69 22.57 0.15 5.26 16 13 C -0.22 -8.13 9.05 22.36 0.20 -7.93 16 14 C -0.06 -1.82 10.04 22.25 0.22 -1.59 16 15 C -0.16 -4.42 9.96 22.40 0.22 -4.20 16 16 C 0.08 2.54 6.49 22.54 0.15 2.69 16 17 C -0.02 -0.63 6.50 22.61 0.15 -0.48 16 18 O -0.33 -12.62 10.18 -72.10 -0.73 -13.36 16 19 C 0.01 0.18 7.26 72.14 0.52 0.71 16 20 C 0.02 0.40 7.26 72.14 0.52 0.93 16 21 O -0.31 -8.48 10.42 -82.60 -0.86 -9.34 16 22 C -0.18 -8.13 9.88 30.59 0.30 -7.83 16 23 C -0.19 -8.40 9.93 30.60 0.30 -8.09 16 24 H 0.27 14.16 8.32 -92.71 -0.77 13.39 16 25 H 0.04 1.79 7.19 -2.39 -0.02 1.77 16 26 H 0.09 4.87 5.20 -2.39 -0.01 4.86 16 27 H 0.13 4.92 6.29 -2.91 -0.02 4.91 16 28 H 0.17 3.36 8.06 -2.91 -0.02 3.33 16 29 H 0.16 3.37 8.06 -2.91 -0.02 3.35 16 30 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.15 2.65 8.14 -2.39 -0.02 2.63 16 32 H 0.16 1.74 8.14 -2.39 -0.02 1.73 16 33 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.08 3.48 8.08 -2.38 -0.02 3.46 16 35 H 0.08 3.64 8.14 -2.39 -0.02 3.62 16 36 H 0.08 3.50 8.14 -2.39 -0.02 3.48 16 37 H 0.08 3.50 8.14 -2.39 -0.02 3.48 16 Total: -1.00 -69.02 312.10 4.59 -64.44 By element: Atomic # 1 Polarization: 18.99 SS G_CDS: 1.08 Total: 20.06 kcal Atomic # 6 Polarization: -45.09 SS G_CDS: 3.62 Total: -41.48 kcal Atomic # 7 Polarization: -50.30 SS G_CDS: 0.24 Total: -50.06 kcal Atomic # 8 Polarization: -37.15 SS G_CDS: -2.37 Total: -39.53 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -69.02 4.59 -64.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596270220.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.803 kcal (2) G-P(sol) polarization free energy of solvation -69.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds