Wall clock time and date at job start Mon Mar 30 2020 01:27:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47184 * 2 1 4 4 C 1.50700 * 109.47202 * 239.99798 * 2 1 3 5 5 H 1.08002 * 120.00100 * 274.89981 * 4 2 1 6 6 C 1.37880 * 119.99941 * 94.90451 * 4 2 1 7 7 N 1.31515 * 120.00086 * 183.89537 * 6 4 2 8 8 Si 1.86799 * 120.00148 * 3.88538 * 6 4 2 9 9 H 1.48496 * 109.46932 * 84.42591 * 8 6 4 10 10 H 1.48491 * 109.47212 * 204.42885 * 8 6 4 11 11 H 1.48507 * 109.46996 * 324.43060 * 8 6 4 12 12 N 1.46900 * 109.47308 * 119.99936 * 2 1 3 13 13 C 1.46905 * 111.00101 * 176.04915 * 12 2 1 14 14 C 1.46902 * 110.99962 * 299.99666 * 12 2 1 15 15 C 1.50697 * 109.47332 * 169.99613 * 14 12 2 16 16 C 1.32099 * 124.29495 * 89.72692 * 15 14 12 17 17 C 1.44901 * 114.83049 * 179.80724 * 16 15 14 18 18 C 1.41415 * 130.46027 * 180.21008 * 17 16 15 19 19 C 1.36120 * 119.28398 * 180.31268 * 18 17 16 20 20 N 1.32308 * 121.45686 * 359.95761 * 19 18 17 21 21 C 1.31477 * 122.07146 * 0.02562 * 20 19 18 22 22 C 1.39532 * 120.60836 * 0.02562 * 21 20 19 23 23 S 1.75355 * 124.30308 * 270.03298 * 15 14 12 24 24 H 1.09000 * 109.47001 * 186.77157 * 1 2 3 25 25 H 1.08991 * 109.47541 * 66.76836 * 1 2 3 26 26 H 1.09008 * 109.46974 * 306.76386 * 1 2 3 27 27 H 0.96996 * 120.00229 * 179.97438 * 7 6 4 28 28 H 1.08998 * 109.47366 * 59.99548 * 13 12 2 29 29 H 1.09000 * 109.46890 * 180.02562 * 13 12 2 30 30 H 1.08997 * 109.46501 * 299.99899 * 13 12 2 31 31 H 1.08999 * 109.47541 * 290.00020 * 14 12 2 32 32 H 1.09005 * 109.46858 * 50.00531 * 14 12 2 33 33 H 1.07995 * 122.58204 * 0.02562 * 16 15 14 34 34 H 1.07999 * 120.36025 * 0.31077 * 18 17 16 35 35 H 1.07995 * 119.27055 * 179.97438 * 19 18 17 36 36 H 1.08000 * 119.69442 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.1370 -1.7854 -1.2284 6 6 2.3584 0.0119 -2.3587 7 7 2.7234 -0.6130 -3.4568 8 14 2.2813 1.8780 -2.3277 9 1 3.5499 2.4166 -1.7748 10 1 2.0869 2.3884 -3.7085 11 1 1.1458 2.3124 -1.4749 12 7 2.0197 -0.6925 1.1994 13 6 3.4851 -0.7944 1.1870 14 6 1.5487 -0.0263 2.4211 15 6 1.8579 -0.8910 3.6159 16 6 2.9814 -0.8299 4.3081 17 6 3.0609 -1.7536 5.4218 18 6 4.0906 -1.9636 6.3680 19 6 3.9264 -2.9112 7.3313 20 7 2.8243 -3.6397 7.4025 21 6 1.8327 -3.4905 6.5522 22 6 1.9101 -2.5446 5.5294 23 16 0.7755 -2.1113 4.2593 24 1 -0.3633 -1.0205 0.1212 25 1 -0.3634 0.4053 -0.9442 26 1 -0.3633 0.6151 0.8233 27 1 2.9524 -0.1049 -4.2507 28 1 3.9187 0.2052 1.1591 29 1 3.8209 -1.3116 2.0859 30 1 3.8029 -1.3530 0.3067 31 1 2.0519 0.9347 2.5280 32 1 0.4722 0.1324 2.3564 33 1 3.7776 -0.1420 4.0650 34 1 4.9974 -1.3786 6.3269 35 1 4.7131 -3.0718 8.0536 36 1 0.9501 -4.1059 6.6462 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596996556.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:59 Heat of formation + Delta-G solvation = 43.094114 kcal Electronic energy + Delta-G solvation = -18542.502756 eV Core-core repulsion = 15731.391554 eV Total energy + Delta-G solvation = -2811.111202 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 276.099 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.23108 -39.28768 -36.92902 -34.68120 -32.64604 -32.31264 -31.13126 -28.78211 -26.77401 -25.38648 -25.01900 -23.42327 -21.63090 -21.04393 -19.18315 -18.74502 -17.43635 -17.19585 -16.95129 -16.14306 -15.99481 -15.52163 -15.24288 -15.11358 -14.93486 -14.57286 -14.26899 -14.16105 -13.42542 -13.16641 -13.00467 -12.89713 -12.73625 -12.59538 -12.40463 -12.07375 -11.93889 -11.81288 -11.70562 -11.10027 -10.85642 -10.75380 -10.66988 -9.96175 -9.05251 -8.78324 -8.28376 -6.31758 -0.42756 0.03269 0.44134 0.96358 1.23933 1.31941 1.34367 1.44125 2.32467 2.76593 3.01291 3.29065 3.46488 3.55147 3.75808 3.96627 4.01262 4.25085 4.41177 4.46327 4.50297 4.57815 4.63656 4.69742 4.77205 4.81253 4.89589 4.94755 5.07320 5.11400 5.25871 5.31404 5.46590 5.61822 5.67923 6.05283 6.30877 6.63854 6.77200 6.91779 7.34048 8.88533 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.036063 B = 0.004175 C = 0.004033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.233071 B = 6704.488653 C = 6940.479919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.182 3.818 3 H 0.004 0.996 4 C -0.498 4.498 5 H 0.033 0.967 6 C 0.016 3.984 7 N -0.947 5.947 8 Si 0.935 3.065 9 H -0.270 1.270 10 H -0.288 1.288 11 H -0.243 1.243 12 N -0.538 5.538 13 C 0.044 3.956 14 C 0.108 3.892 15 C -0.128 4.128 16 C -0.134 4.134 17 C -0.047 4.047 18 C -0.131 4.131 19 C 0.073 3.927 20 N -0.495 5.495 21 C 0.149 3.851 22 C -0.223 4.223 23 S 0.135 5.865 24 H 0.049 0.951 25 H 0.043 0.957 26 H 0.057 0.943 27 H 0.266 0.734 28 H 0.017 0.983 29 H 0.070 0.930 30 H 0.049 0.951 31 H 0.060 0.940 32 H 0.095 0.905 33 H 0.159 0.841 34 H 0.165 0.835 35 H 0.188 0.812 36 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.299 1.455 21.070 21.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.075 3.925 3 H 0.021 0.979 4 C -0.537 4.537 5 H 0.051 0.949 6 C -0.182 4.182 7 N -0.587 5.587 8 Si 0.759 3.241 9 H -0.195 1.195 10 H -0.214 1.214 11 H -0.167 1.167 12 N -0.263 5.263 13 C -0.105 4.105 14 C -0.021 4.021 15 C -0.245 4.245 16 C -0.165 4.165 17 C -0.063 4.063 18 C -0.152 4.152 19 C -0.077 4.077 20 N -0.205 5.205 21 C -0.020 4.020 22 C -0.341 4.341 23 S 0.399 5.601 24 H 0.069 0.931 25 H 0.062 0.938 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.036 0.964 29 H 0.089 0.911 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.114 0.886 33 H 0.177 0.823 34 H 0.182 0.818 35 H 0.204 0.796 36 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -1.892 -0.072 21.114 21.199 hybrid contribution 1.950 2.376 -1.120 3.272 sum 0.058 2.304 19.994 20.126 Atomic orbital electron populations 1.21917 0.96047 1.00988 1.00027 1.19636 0.93547 0.91582 0.87723 0.97865 1.20996 1.42633 0.93987 0.96049 0.94858 1.25808 0.94444 1.03074 0.94865 1.70040 1.47910 1.37821 1.02926 0.85924 0.79955 0.80580 0.77624 1.19542 1.21408 1.16682 1.62039 1.10757 1.52448 1.01040 1.22132 0.87537 0.99282 1.01502 1.20786 1.02132 0.93292 0.85928 1.24127 0.98421 1.01392 1.00599 1.20953 0.98710 1.01603 0.95237 1.19678 0.94649 0.95607 0.96357 1.21989 0.99220 0.99901 0.94099 1.22665 0.95490 0.91790 0.97737 1.67769 1.01720 1.25600 1.25374 1.22574 0.97839 0.93579 0.88008 1.24078 1.00980 1.05009 1.04052 1.84144 1.18320 1.34978 1.22624 0.93144 0.93831 0.92449 0.92543 0.96403 0.91116 0.93217 0.92240 0.88647 0.82334 0.81795 0.79559 0.80513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.16 8.76 71.98 0.63 -4.53 16 2 C 0.18 8.05 1.70 44.17 0.08 8.12 16 3 H 0.00 0.17 5.35 -2.39 -0.01 0.15 16 4 C -0.50 -27.41 7.46 25.60 0.19 -27.22 16 5 H 0.03 2.10 8.04 -2.91 -0.02 2.08 16 6 C 0.02 0.88 5.47 84.66 0.46 1.35 16 7 N -0.95 -57.93 13.96 21.45 0.30 -57.63 16 8 Si 0.93 42.49 26.95 68.60 1.85 44.34 16 9 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 10 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 11 H -0.24 -10.09 6.88 99.48 0.68 -9.41 16 12 N -0.54 -20.88 4.61 -906.04 -4.18 -25.06 16 13 C 0.04 1.66 8.99 127.69 1.15 2.81 16 14 C 0.11 3.25 5.22 85.56 0.45 3.69 16 15 C -0.13 -3.48 5.36 24.72 0.13 -3.35 16 16 C -0.13 -3.31 8.59 23.01 0.20 -3.12 16 17 C -0.05 -1.12 6.10 -20.35 -0.12 -1.25 16 18 C -0.13 -2.47 10.13 22.56 0.23 -2.24 16 19 C 0.07 1.36 11.07 84.13 0.93 2.29 16 20 N -0.49 -11.24 10.34 -196.36 -2.03 -13.27 16 21 C 0.15 3.34 11.24 85.06 0.96 4.29 16 22 C -0.22 -5.52 6.52 23.02 0.15 -5.37 16 23 S 0.14 3.46 23.20 -56.49 -1.31 2.15 16 24 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 25 H 0.04 1.76 8.13 -2.39 -0.02 1.74 16 26 H 0.06 1.83 6.57 -2.38 -0.02 1.81 16 27 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 28 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.07 2.32 6.02 -2.39 -0.01 2.31 16 30 H 0.05 2.23 6.96 -2.39 -0.02 2.22 16 31 H 0.06 1.66 8.12 -2.39 -0.02 1.64 16 32 H 0.10 2.72 5.97 -2.38 -0.01 2.71 16 33 H 0.16 3.38 8.03 -2.91 -0.02 3.36 16 34 H 0.16 2.08 8.06 -2.91 -0.02 2.06 16 35 H 0.19 2.14 8.06 -2.91 -0.02 2.11 16 36 H 0.18 3.06 8.06 -2.91 -0.02 3.03 16 Total: -1.00 -65.71 308.73 1.11 -64.59 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: 1.06 Total: 9.39 kcal Atomic # 6 Polarization: -29.94 SS G_CDS: 5.43 Total: -24.52 kcal Atomic # 7 Polarization: -90.05 SS G_CDS: -5.91 Total: -95.96 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 1.85 Total: 44.34 kcal Atomic # 16 Polarization: 3.46 SS G_CDS: -1.31 Total: 2.15 kcal Total: -65.71 1.11 -64.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596996556.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.688 kcal (2) G-P(sol) polarization free energy of solvation -65.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds