Wall clock time and date at job start Mon Mar 30 2020 01:40:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31255 * 1 3 3 Si 1.86796 * 119.99861 * 2 1 4 4 H 1.48506 * 109.47146 * 274.97786 * 3 2 1 5 5 H 1.48499 * 109.47409 * 34.97812 * 3 2 1 6 6 H 1.48500 * 109.46993 * 154.98143 * 3 2 1 7 7 C 1.39014 * 119.99998 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99761 * 174.13366 * 7 2 1 9 9 N 1.37564 * 119.99855 * 354.40944 * 7 2 1 10 10 C 1.36665 * 126.88588 * 185.21017 * 9 7 2 11 11 C 1.34950 * 106.73234 * 179.84739 * 10 9 7 12 12 C 1.50691 * 125.49080 * 180.15731 * 11 10 9 13 13 N 1.46909 * 109.47249 * 95.33803 * 12 11 10 14 14 C 1.46898 * 111.00016 * 179.97438 * 13 12 11 15 15 C 1.50695 * 109.47269 * 179.97438 * 14 13 12 16 16 C 1.38250 * 119.97253 * 269.72906 * 15 14 13 17 17 C 1.38199 * 120.02063 * 179.71943 * 16 15 14 18 18 C 1.38459 * 119.97793 * 0.57650 * 17 16 15 19 19 F 1.35101 * 120.02801 * 179.68113 * 18 17 16 20 20 C 1.38455 * 119.94715 * 359.69503 * 18 17 16 21 21 C 1.38205 * 119.97518 * 0.02562 * 20 18 17 22 22 N 1.33465 * 109.02171 * 0.42561 * 11 10 9 23 23 N 1.28761 * 109.98703 * 359.72934 * 22 11 10 24 24 H 0.96993 * 119.99992 * 0.02562 * 1 2 3 25 25 H 1.07999 * 126.63819 * 359.97438 * 10 9 7 26 26 H 1.09006 * 109.47433 * 215.33279 * 12 11 10 27 27 H 1.08996 * 109.47326 * 335.33762 * 12 11 10 28 28 H 1.00899 * 110.99512 * 303.95131 * 13 12 11 29 29 H 1.09003 * 109.47429 * 300.00135 * 14 13 12 30 30 H 1.09005 * 109.46923 * 59.99858 * 14 13 12 31 31 H 1.07996 * 119.98784 * 359.97438 * 16 15 14 32 32 H 1.08004 * 120.01179 * 180.24950 * 17 16 15 33 33 H 1.08003 * 120.01610 * 179.97438 * 20 18 17 34 34 H 1.07999 * 119.98683 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3125 0.0000 0.0000 3 14 2.2465 1.6177 0.0000 4 1 2.3888 2.1072 -1.3948 5 1 1.5005 2.6200 0.8026 6 1 3.5927 1.4121 0.5921 7 6 2.0076 -1.2039 -0.0005 8 1 3.0833 -1.2063 -0.0961 9 7 1.3247 -2.3924 0.1150 10 6 1.8663 -3.6420 0.2294 11 6 0.8338 -4.5062 0.3199 12 6 0.9544 -6.0013 0.4644 13 7 0.8737 -6.3640 1.8857 14 6 0.9873 -7.8175 2.0654 15 6 0.9010 -8.1506 3.5325 16 6 2.0515 -8.2043 4.2974 17 6 1.9730 -8.5040 5.6442 18 6 0.7429 -8.7622 6.2249 19 9 0.6656 -9.0616 7.5401 20 6 -0.4080 -8.7136 5.4567 21 6 -0.3277 -8.4081 4.1113 22 7 -0.3115 -3.8239 0.2548 23 7 -0.0678 -2.5655 0.1329 24 1 -0.4850 0.8400 -0.0004 25 1 2.9173 -3.8897 0.2464 26 1 0.1440 -6.4856 -0.0806 27 1 1.9116 -6.3294 0.0595 28 1 1.5750 -5.8770 2.4234 29 1 0.1770 -8.3140 1.5315 30 1 1.9447 -8.1586 1.6714 31 1 3.0113 -8.0079 3.8431 32 1 2.8714 -8.5419 6.2424 33 1 -1.3680 -8.9153 5.9085 34 1 -1.2253 -8.3697 3.5120 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600973204.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:46 Heat of formation + Delta-G solvation = 69.500679 kcal Electronic energy + Delta-G solvation = -19531.379026 eV Core-core repulsion = 16187.492473 eV Total energy + Delta-G solvation = -3343.886552 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.108 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.98392 -40.08150 -39.27252 -35.82369 -34.06790 -31.65002 -31.23524 -31.18842 -28.98593 -26.18618 -25.15048 -23.25320 -23.09668 -21.34336 -21.28747 -19.60526 -17.82990 -17.62974 -16.50549 -15.89192 -15.68955 -15.53855 -14.92475 -14.64375 -14.42268 -14.16851 -13.67271 -13.55960 -13.40320 -13.18141 -13.03549 -12.27776 -12.07139 -11.93998 -11.47956 -11.45895 -11.30646 -11.26642 -11.06675 -10.60145 -9.94007 -9.59091 -9.20696 -9.18512 -8.73548 -8.68297 -8.06929 -7.41993 -6.82641 -4.62791 1.02411 1.14138 2.81588 2.95007 3.01553 3.30652 3.45834 3.68541 4.01561 4.16098 4.59372 4.63404 4.70703 4.77995 4.80381 4.96488 5.14966 5.17827 5.50303 5.59880 5.73521 5.80624 5.87323 5.93668 6.00936 6.13531 6.21568 6.29154 6.47208 6.76659 6.78688 6.95222 7.05248 7.33277 7.69248 7.80673 7.90900 8.51302 9.12162 10.14523 10.23738 Molecular weight = 276.11amu Principal moments of inertia in cm(-1) A = 0.026055 B = 0.003101 C = 0.002964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.392868 B = 9026.289262 C = 9444.607863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.759 5.759 2 C 0.047 3.953 3 Si 0.941 3.059 4 H -0.268 1.268 5 H -0.272 1.272 6 H -0.261 1.261 7 C -0.316 4.316 8 H 0.120 0.880 9 N -0.148 5.148 10 C -0.116 4.116 11 C -0.075 4.075 12 C 0.163 3.837 13 N -0.677 5.677 14 C 0.097 3.903 15 C -0.085 4.085 16 C -0.086 4.086 17 C -0.155 4.155 18 C 0.091 3.909 19 F -0.144 7.144 20 C -0.155 4.155 21 C -0.067 4.067 22 N -0.311 5.311 23 N -0.094 5.094 24 H 0.282 0.718 25 H 0.152 0.848 26 H 0.074 0.926 27 H 0.031 0.969 28 H 0.342 0.658 29 H 0.081 0.919 30 H 0.037 0.963 31 H 0.130 0.870 32 H 0.132 0.868 33 H 0.134 0.866 34 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.471 -13.539 6.788 16.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.385 5.385 2 C -0.172 4.172 3 Si 0.764 3.236 4 H -0.193 1.193 5 H -0.197 1.197 6 H -0.185 1.185 7 C -0.453 4.453 8 H 0.137 0.863 9 N 0.081 4.919 10 C -0.271 4.271 11 C -0.223 4.223 12 C 0.033 3.967 13 N -0.309 5.309 14 C -0.032 4.032 15 C -0.086 4.086 16 C -0.105 4.105 17 C -0.174 4.174 18 C 0.071 3.929 19 F -0.123 7.123 20 C -0.174 4.174 21 C -0.086 4.086 22 N -0.171 5.171 23 N -0.071 5.071 24 H 0.093 0.907 25 H 0.169 0.831 26 H 0.092 0.908 27 H 0.049 0.951 28 H 0.160 0.840 29 H 0.100 0.900 30 H 0.055 0.945 31 H 0.148 0.852 32 H 0.150 0.850 33 H 0.152 0.848 34 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 3.087 -12.727 6.754 14.735 hybrid contribution 2.500 0.271 0.201 2.523 sum 5.587 -12.456 6.955 15.322 Atomic orbital electron populations 1.70149 1.06437 1.29079 1.32799 1.25782 0.95773 1.00822 0.94867 0.85697 0.79547 0.79223 0.79108 1.19340 1.19712 1.18465 1.20127 0.92593 0.80776 1.51802 0.86265 1.46711 1.06942 1.04713 1.33517 1.22298 0.98784 0.85808 1.20187 1.20471 0.89489 0.95083 1.17224 1.19824 0.99115 0.90384 0.87386 1.60533 1.55929 1.04077 1.10336 1.20889 1.00737 0.90497 0.91094 1.19955 0.93014 0.99149 0.96444 1.20944 0.98660 0.98122 0.92767 1.21084 0.96547 1.03665 0.96114 1.17738 0.94882 1.02244 0.78008 1.91483 1.97214 1.90874 1.32729 1.21166 0.97638 1.03788 0.94785 1.20967 0.97966 0.96009 0.93652 1.74011 1.25225 1.00822 1.17035 1.82573 0.88837 1.07078 1.28588 0.90688 0.83085 0.90762 0.95077 0.84012 0.90026 0.94525 0.85195 0.84961 0.84850 0.84656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -20.58 11.91 55.50 0.66 -19.92 16 2 C 0.05 1.18 5.50 -17.51 -0.10 1.08 16 3 Si 0.94 18.06 29.55 -169.99 -5.02 13.04 16 4 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 5 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 6 H -0.26 -4.78 7.11 56.52 0.40 -4.38 16 7 C -0.32 -8.14 10.30 -14.69 -0.15 -8.29 16 8 H 0.12 2.71 7.84 -52.49 -0.41 2.30 16 9 N -0.15 -4.04 3.78 -11.48 -0.04 -4.08 16 10 C -0.12 -2.70 11.47 -16.57 -0.19 -2.89 16 11 C -0.07 -1.72 6.61 -83.05 -0.55 -2.27 16 12 C 0.16 2.81 6.21 -4.98 -0.03 2.77 16 13 N -0.68 -10.53 6.48 -116.34 -0.75 -11.28 16 14 C 0.10 1.14 5.81 -4.98 -0.03 1.11 16 15 C -0.08 -0.97 5.39 -104.62 -0.56 -1.54 16 16 C -0.09 -0.90 9.70 -39.59 -0.38 -1.29 16 17 C -0.16 -1.64 10.03 -39.51 -0.40 -2.04 16 18 C 0.09 1.05 7.30 -39.42 -0.29 0.77 16 19 F -0.14 -1.76 17.27 2.25 0.04 -1.72 16 20 C -0.15 -1.71 10.03 -39.51 -0.40 -2.11 16 21 C -0.07 -0.76 9.70 -39.59 -0.38 -1.15 16 22 N -0.31 -8.50 12.33 33.16 0.41 -8.09 16 23 N -0.09 -2.77 11.75 60.35 0.71 -2.06 16 24 H 0.28 6.92 8.30 -40.82 -0.34 6.58 16 25 H 0.15 2.92 8.06 -52.49 -0.42 2.50 16 26 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 27 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.34 5.34 8.72 -39.29 -0.34 5.00 16 29 H 0.08 0.91 8.09 -51.93 -0.42 0.49 16 30 H 0.04 0.38 8.08 -51.93 -0.42 -0.04 16 31 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 32 H 0.13 1.14 8.06 -52.48 -0.42 0.72 16 33 H 0.13 1.23 8.06 -52.48 -0.42 0.81 16 34 H 0.14 1.40 8.06 -52.49 -0.42 0.97 16 LS Contribution 310.03 15.07 4.67 4.67 Total: -1.00 -31.71 310.03 -6.48 -38.19 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -3.69 Total: 7.09 kcal Atomic # 6 Polarization: -12.37 SS G_CDS: -3.46 Total: -15.83 kcal Atomic # 7 Polarization: -46.42 SS G_CDS: 0.98 Total: -45.44 kcal Atomic # 9 Polarization: -1.76 SS G_CDS: 0.04 Total: -1.72 kcal Atomic # 14 Polarization: 18.06 SS G_CDS: -5.02 Total: 13.04 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.71 -6.48 -38.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600973204.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.686 kcal (2) G-P(sol) polarization free energy of solvation -31.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds