Wall clock time and date at job start Mon Mar 30 2020 01:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47649 * 2 1 4 4 C 1.53002 * 109.46687 * 119.99877 * 2 1 3 5 5 C 1.50706 * 109.47153 * 294.99260 * 4 2 1 6 6 H 1.07998 * 119.99503 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00434 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 359.72891 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47364 * 179.72558 * 9 7 5 11 11 H 1.48508 * 109.46883 * 299.72681 * 9 7 5 12 12 H 1.48497 * 109.46870 * 59.72491 * 9 7 5 13 13 C 1.53005 * 109.47080 * 239.99305 * 2 1 3 14 14 N 1.46494 * 109.46777 * 65.00298 * 13 2 1 15 15 C 1.39836 * 119.99876 * 179.97438 * 14 13 2 16 16 C 1.39404 * 120.08440 * 359.72983 * 15 14 13 17 17 C 1.36006 * 120.71018 * 179.67742 * 16 15 14 18 18 C 1.41191 * 120.65296 * 0.62839 * 17 16 15 19 19 N 1.34776 * 128.79807 * 179.68862 * 18 17 16 20 20 C 1.28002 * 118.11693 * 179.97438 * 19 18 17 21 21 S 1.75820 * 110.44068 * 0.02562 * 20 19 18 22 22 C 1.39856 * 118.44180 * 359.65995 * 18 17 16 23 23 C 1.38244 * 120.08842 * 180.02562 * 15 14 13 24 24 H 1.09001 * 109.46866 * 60.00233 * 1 2 3 25 25 H 1.09000 * 109.47309 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46932 * 300.00791 * 1 2 3 27 27 H 1.09004 * 109.47178 * 175.00050 * 4 2 1 28 28 H 1.08993 * 109.47411 * 54.99732 * 4 2 1 29 29 H 0.97000 * 120.00236 * 0.27947 * 8 7 5 30 30 H 1.08997 * 109.46867 * 185.00573 * 13 2 1 31 31 H 1.09001 * 109.46919 * 305.00269 * 13 2 1 32 32 H 0.96998 * 120.00823 * 0.02562 * 14 13 2 33 33 H 1.08004 * 119.64451 * 359.97401 * 16 15 14 34 34 H 1.08001 * 119.67846 * 180.31084 * 17 16 15 35 35 H 1.08000 * 124.77645 * 180.02562 * 20 19 18 36 36 H 1.08003 * 120.01256 * 0.02562 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6413 0.0572 2.4766 6 1 1.0801 0.9744 2.3756 7 6 1.9931 -0.4014 3.7283 8 7 2.6720 -1.5211 3.8516 9 14 1.4984 0.5631 5.2497 10 1 1.9882 -0.1399 6.4625 11 1 2.0952 1.9217 5.1901 12 1 0.0187 0.6744 5.3057 13 6 2.0400 -0.7214 -1.2492 14 7 1.6525 0.0351 -2.4423 15 6 2.0094 -0.4303 -3.7117 16 6 2.7388 -1.6109 -3.8436 17 6 3.0871 -2.0786 -5.0723 18 6 2.7283 -1.3709 -6.2402 19 7 2.9895 -1.6765 -7.5266 20 6 2.5621 -0.8816 -8.4343 21 16 1.7017 0.4704 -7.7110 22 6 2.0017 -0.1838 -6.1029 23 6 1.6451 0.2825 -4.8389 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5140 0.8899 27 1 3.1263 -0.7995 1.2057 28 1 1.6053 -1.7197 1.2953 29 1 2.9286 -2.0221 3.0617 30 1 3.1263 -0.7997 -1.2054 31 1 1.6053 -1.7200 -1.2950 32 1 1.1490 0.8592 -2.3518 33 1 3.0263 -2.1627 -2.9608 34 1 3.6480 -2.9978 -5.1554 35 1 2.7092 -1.0218 -9.4950 36 1 1.0845 1.2003 -4.7399 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602591654.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:35 Heat of formation + Delta-G solvation = 35.419918 kcal Electronic energy + Delta-G solvation = -17896.995338 eV Core-core repulsion = 15085.551358 eV Total energy + Delta-G solvation = -2811.443980 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 276.099 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.34894 -38.12282 -36.17164 -33.82262 -32.10267 -31.16481 -28.63445 -26.66301 -26.12526 -24.18586 -23.27383 -22.67883 -20.95676 -19.67258 -18.46358 -17.15294 -16.90089 -16.30106 -15.62748 -14.98604 -14.70877 -14.49553 -13.97124 -13.84019 -13.53785 -13.45576 -13.16449 -12.90827 -12.52618 -12.08767 -11.88258 -11.59682 -11.22185 -10.89958 -10.83155 -10.51570 -10.21860 -10.18229 -10.13913 -9.76410 -9.74840 -9.68157 -8.61566 -8.39582 -8.37673 -7.33742 -6.41946 -4.11775 0.50532 1.10957 1.21003 1.64146 2.37309 3.38996 3.40886 3.41879 3.59823 3.68110 3.96507 4.49151 4.57425 4.97546 5.08997 5.13572 5.27726 5.33718 5.43549 5.45576 5.65368 5.70106 5.87363 5.98710 6.07377 6.13490 6.16748 6.20922 6.43317 6.61870 6.76002 6.86320 7.20710 7.23651 7.39687 7.53492 7.65718 8.12313 8.38680 8.81553 9.59817 10.98505 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.051525 B = 0.002860 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.294469 B = 9786.385081 C =10190.780905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.089 4.089 3 H 0.065 0.935 4 C 0.017 3.983 5 C -0.599 4.599 6 H 0.050 0.950 7 C 0.015 3.985 8 N -0.912 5.912 9 Si 1.067 2.933 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.288 1.288 13 C 0.120 3.880 14 N -0.728 5.728 15 C 0.255 3.745 16 C -0.174 4.174 17 C -0.010 4.010 18 C -0.001 4.001 19 N -0.444 5.444 20 C 0.071 3.929 21 S 0.013 5.987 22 C -0.098 4.098 23 C -0.181 4.181 24 H 0.032 0.968 25 H 0.046 0.954 26 H 0.066 0.934 27 H 0.008 0.992 28 H 0.010 0.990 29 H 0.268 0.732 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.402 0.598 33 H 0.138 0.862 34 H 0.134 0.866 35 H 0.202 0.798 36 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.848 2.541 -21.313 21.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.108 4.108 3 H 0.083 0.917 4 C -0.020 4.020 5 C -0.637 4.637 6 H 0.068 0.932 7 C -0.189 4.189 8 N -0.548 5.548 9 Si 0.895 3.105 10 H -0.208 1.208 11 H -0.215 1.215 12 H -0.215 1.215 13 C -0.003 4.003 14 N -0.354 5.354 15 C 0.143 3.857 16 C -0.198 4.198 17 C -0.031 4.031 18 C -0.120 4.120 19 N -0.154 5.154 20 C -0.236 4.236 21 S 0.263 5.737 22 C -0.217 4.217 23 C -0.212 4.212 24 H 0.051 0.949 25 H 0.065 0.935 26 H 0.085 0.915 27 H 0.027 0.973 28 H 0.028 0.972 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.238 0.762 33 H 0.155 0.845 34 H 0.152 0.848 35 H 0.219 0.781 36 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -1.874 2.770 -20.045 20.322 hybrid contribution -0.079 -0.080 -1.056 1.062 sum -1.953 2.690 -21.101 21.361 Atomic orbital electron populations 1.21725 0.95579 1.01206 1.00466 1.21313 0.95883 0.99802 0.93817 0.91686 1.19207 0.95522 0.95628 0.91678 1.21978 1.39123 1.10406 0.92182 0.93173 1.25827 0.94588 0.97083 1.01407 1.70792 1.35916 1.14565 1.33560 0.83566 0.76073 0.75162 0.75674 1.20753 1.21465 1.21455 1.21769 0.99375 0.95359 0.83812 1.45148 1.59948 1.27863 1.02435 1.17754 0.90782 0.91768 0.85363 1.20398 1.03902 0.97449 0.98051 1.20216 0.96039 0.98058 0.88823 1.18978 1.06229 0.96271 0.90547 1.66023 1.19752 1.29687 0.99938 1.28623 0.99843 0.92580 1.02523 1.84950 1.60207 1.30579 0.97936 1.23193 1.02724 0.98557 0.97226 1.19498 1.10162 1.03150 0.88359 0.94932 0.93451 0.91497 0.97329 0.97166 0.92108 0.92118 0.92144 0.76244 0.84458 0.84812 0.78103 0.85531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.27 8.88 37.16 0.33 -1.94 16 2 C -0.09 -1.63 2.37 -90.62 -0.22 -1.85 16 3 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 4 C 0.02 0.40 3.76 -27.88 -0.10 0.30 16 5 C -0.60 -16.12 8.41 -34.44 -0.29 -16.41 16 6 H 0.05 1.33 7.06 -52.49 -0.37 0.95 16 7 C 0.01 0.42 5.46 -17.82 -0.10 0.32 16 8 N -0.91 -27.23 13.65 55.43 0.76 -26.47 16 9 Si 1.07 24.64 29.90 -169.99 -5.08 19.55 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 12 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 13 C 0.12 1.82 4.30 -4.04 -0.02 1.80 16 14 N -0.73 -9.55 5.47 -58.64 -0.32 -9.87 16 15 C 0.25 3.32 6.65 -83.77 -0.56 2.77 16 16 C -0.17 -2.20 9.22 -39.95 -0.37 -2.57 16 17 C -0.01 -0.12 10.04 -39.26 -0.39 -0.52 16 18 C 0.00 -0.02 6.95 -84.85 -0.59 -0.60 16 19 N -0.44 -5.73 10.56 -11.58 -0.12 -5.85 16 20 C 0.07 0.70 12.41 51.17 0.63 1.34 16 21 S 0.01 0.14 23.39 -107.50 -2.51 -2.38 16 22 C -0.10 -1.27 6.53 -38.56 -0.25 -1.52 16 23 C -0.18 -2.29 9.92 -39.16 -0.39 -2.68 16 24 H 0.03 0.46 7.18 -51.93 -0.37 0.09 16 25 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 26 H 0.07 1.27 6.95 -51.93 -0.36 0.91 16 27 H 0.01 0.21 8.01 -51.93 -0.42 -0.20 16 28 H 0.01 0.25 8.00 -51.93 -0.42 -0.16 16 29 H 0.27 7.93 7.22 -40.82 -0.29 7.64 16 30 H 0.06 0.93 7.94 -51.93 -0.41 0.52 16 31 H 0.06 0.91 7.96 -51.93 -0.41 0.50 16 32 H 0.40 4.84 7.67 -40.82 -0.31 4.52 16 33 H 0.14 1.61 6.72 -52.48 -0.35 1.26 16 34 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 35 H 0.20 1.13 8.06 -52.49 -0.42 0.70 16 36 H 0.13 1.40 8.06 -52.48 -0.42 0.98 16 LS Contribution 314.34 15.07 4.74 4.74 Total: -1.00 -30.55 314.34 -9.49 -40.04 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: -4.63 Total: 1.81 kcal Atomic # 6 Polarization: -19.26 SS G_CDS: -2.31 Total: -21.57 kcal Atomic # 7 Polarization: -42.50 SS G_CDS: 0.31 Total: -42.19 kcal Atomic # 14 Polarization: 24.64 SS G_CDS: -5.08 Total: 19.55 kcal Atomic # 16 Polarization: 0.14 SS G_CDS: -2.51 Total: -2.38 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -30.55 -9.49 -40.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602591654.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.455 kcal (2) G-P(sol) polarization free energy of solvation -30.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds