Wall clock time and date at job start Mon Mar 30 2020 01:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47649 * 2 1 4 4 C 1.53002 * 109.46687 * 119.99877 * 2 1 3 5 5 C 1.50706 * 109.47153 * 294.99260 * 4 2 1 6 6 H 1.07998 * 119.99503 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00434 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 359.72891 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47364 * 179.72558 * 9 7 5 11 11 H 1.48508 * 109.46883 * 299.72681 * 9 7 5 12 12 H 1.48497 * 109.46870 * 59.72491 * 9 7 5 13 13 C 1.53005 * 109.47080 * 239.99305 * 2 1 3 14 14 N 1.46494 * 109.46777 * 65.00298 * 13 2 1 15 15 C 1.39836 * 119.99876 * 179.97438 * 14 13 2 16 16 C 1.39404 * 120.08440 * 359.72983 * 15 14 13 17 17 C 1.36006 * 120.71018 * 179.67742 * 16 15 14 18 18 C 1.41191 * 120.65296 * 0.62839 * 17 16 15 19 19 N 1.34776 * 128.79807 * 179.68862 * 18 17 16 20 20 C 1.28002 * 118.11693 * 179.97438 * 19 18 17 21 21 S 1.75820 * 110.44068 * 0.02562 * 20 19 18 22 22 C 1.39856 * 118.44180 * 359.65995 * 18 17 16 23 23 C 1.38244 * 120.08842 * 180.02562 * 15 14 13 24 24 H 1.09001 * 109.46866 * 60.00233 * 1 2 3 25 25 H 1.09000 * 109.47309 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46932 * 300.00791 * 1 2 3 27 27 H 1.09004 * 109.47178 * 175.00050 * 4 2 1 28 28 H 1.08993 * 109.47411 * 54.99732 * 4 2 1 29 29 H 0.97000 * 120.00236 * 0.27947 * 8 7 5 30 30 H 1.08997 * 109.46867 * 185.00573 * 13 2 1 31 31 H 1.09001 * 109.46919 * 305.00269 * 13 2 1 32 32 H 0.96998 * 120.00823 * 0.02562 * 14 13 2 33 33 H 1.08004 * 119.64451 * 359.97401 * 16 15 14 34 34 H 1.08001 * 119.67846 * 180.31084 * 17 16 15 35 35 H 1.08000 * 124.77645 * 180.02562 * 20 19 18 36 36 H 1.08003 * 120.01256 * 0.02562 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6413 0.0572 2.4766 6 1 1.0801 0.9744 2.3756 7 6 1.9931 -0.4014 3.7283 8 7 2.6720 -1.5211 3.8516 9 14 1.4984 0.5631 5.2497 10 1 1.9882 -0.1399 6.4625 11 1 2.0952 1.9217 5.1901 12 1 0.0187 0.6744 5.3057 13 6 2.0400 -0.7214 -1.2492 14 7 1.6525 0.0351 -2.4423 15 6 2.0094 -0.4303 -3.7117 16 6 2.7388 -1.6109 -3.8436 17 6 3.0871 -2.0786 -5.0723 18 6 2.7283 -1.3709 -6.2402 19 7 2.9895 -1.6765 -7.5266 20 6 2.5621 -0.8816 -8.4343 21 16 1.7017 0.4704 -7.7110 22 6 2.0017 -0.1838 -6.1029 23 6 1.6451 0.2825 -4.8389 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5140 0.8899 27 1 3.1263 -0.7995 1.2057 28 1 1.6053 -1.7197 1.2953 29 1 2.9286 -2.0221 3.0617 30 1 3.1263 -0.7997 -1.2054 31 1 1.6053 -1.7200 -1.2950 32 1 1.1490 0.8592 -2.3518 33 1 3.0263 -2.1627 -2.9608 34 1 3.6480 -2.9978 -5.1554 35 1 2.7092 -1.0218 -9.4950 36 1 1.0845 1.2003 -4.7399 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602591654.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:35 Heat of formation + Delta-G solvation = 17.545465 kcal Electronic energy + Delta-G solvation = -17897.770433 eV Core-core repulsion = 15085.551358 eV Total energy + Delta-G solvation = -2812.219075 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 276.099 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.27751 -39.21034 -37.50599 -35.37842 -33.71713 -32.13096 -29.75742 -28.39583 -27.35711 -25.46059 -24.44327 -24.07991 -21.94984 -21.14409 -19.40196 -18.86389 -18.16326 -17.31376 -16.59326 -16.24718 -15.78193 -15.67258 -15.58495 -15.22681 -14.85151 -14.52945 -14.34274 -14.01633 -13.73780 -13.51090 -13.29532 -13.04816 -12.93930 -12.52996 -12.03810 -11.96155 -11.79890 -11.74688 -11.42895 -11.12130 -10.76957 -10.62608 -10.61369 -10.52191 -9.24782 -8.64631 -8.32768 -6.34578 -0.37856 0.15467 0.36309 0.78986 1.46948 1.53219 1.60753 1.79468 2.33422 2.58414 2.72446 3.17152 3.19065 3.66719 3.91346 4.05004 4.08429 4.12184 4.28176 4.31495 4.56018 4.63477 4.64882 4.78655 4.79219 4.95942 5.03256 5.14750 5.18443 5.21343 5.28690 5.39837 5.49489 5.58609 6.01812 6.16651 6.22553 6.62278 6.65101 6.70102 7.45804 8.76537 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.051525 B = 0.002860 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.294469 B = 9786.385081 C =10190.780905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.079 4.079 3 H 0.063 0.937 4 C 0.017 3.983 5 C -0.606 4.606 6 H 0.054 0.946 7 C -0.041 4.041 8 N -0.942 5.942 9 Si 1.113 2.887 10 H -0.287 1.287 11 H -0.270 1.270 12 H -0.269 1.269 13 C 0.137 3.863 14 N -0.726 5.726 15 C 0.241 3.759 16 C -0.180 4.180 17 C -0.020 4.020 18 C -0.015 4.015 19 N -0.478 5.478 20 C 0.089 3.911 21 S 0.042 5.958 22 C -0.125 4.125 23 C -0.179 4.179 24 H 0.066 0.934 25 H 0.042 0.958 26 H 0.046 0.954 27 H -0.011 1.011 28 H -0.008 1.008 29 H 0.256 0.744 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.408 0.592 33 H 0.141 0.859 34 H 0.146 0.854 35 H 0.244 0.756 36 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.692 3.839 -23.152 23.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.098 4.098 3 H 0.082 0.918 4 C -0.020 4.020 5 C -0.644 4.644 6 H 0.072 0.928 7 C -0.238 4.238 8 N -0.580 5.580 9 Si 0.935 3.065 10 H -0.213 1.213 11 H -0.195 1.195 12 H -0.195 1.195 13 C 0.012 3.988 14 N -0.353 5.353 15 C 0.132 3.868 16 C -0.203 4.203 17 C -0.041 4.041 18 C -0.134 4.134 19 N -0.188 5.188 20 C -0.218 4.218 21 S 0.293 5.707 22 C -0.245 4.245 23 C -0.209 4.209 24 H 0.085 0.915 25 H 0.061 0.939 26 H 0.065 0.935 27 H 0.007 0.993 28 H 0.010 0.990 29 H 0.065 0.935 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.245 0.755 33 H 0.159 0.841 34 H 0.164 0.836 35 H 0.260 0.740 36 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -2.730 4.086 -21.926 22.470 hybrid contribution 0.193 -0.475 -0.692 0.861 sum -2.537 3.611 -22.618 23.044 Atomic orbital electron populations 1.21645 0.94406 1.01124 1.01153 1.21090 0.96739 0.99154 0.92829 0.91838 1.19136 0.94241 0.95024 0.93606 1.22421 1.38138 1.10502 0.93344 0.92785 1.27307 0.94135 0.97258 1.05129 1.70919 1.38131 1.15985 1.32990 0.82979 0.76929 0.74578 0.72043 1.21284 1.19516 1.19456 1.21383 0.98950 0.95087 0.83346 1.44847 1.60667 1.28045 1.01769 1.17808 0.91533 0.92216 0.85290 1.20505 1.03925 0.97556 0.98329 1.20397 0.96339 0.98646 0.88729 1.19283 1.06242 0.96627 0.91247 1.66086 1.21658 1.31093 1.00004 1.29459 0.97239 0.91186 1.03911 1.84847 1.59676 1.30192 0.96031 1.23488 1.03283 0.99049 0.98641 1.19657 1.09729 1.03401 0.88156 0.91475 0.93908 0.93498 0.99271 0.98956 0.93454 0.92574 0.92105 0.75496 0.84139 0.83632 0.73983 0.84144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.19 8.88 71.98 0.64 -3.55 16 2 C -0.08 -2.87 2.37 -10.79 -0.03 -2.90 16 3 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 4 C 0.02 0.85 3.76 29.85 0.11 0.96 16 5 C -0.61 -32.93 8.41 25.60 0.22 -32.71 16 6 H 0.05 2.84 7.06 -2.91 -0.02 2.82 16 7 C -0.04 -2.33 5.46 84.65 0.46 -1.86 16 8 N -0.94 -57.59 13.65 21.45 0.29 -57.30 16 9 Si 1.11 49.29 29.90 68.60 2.05 51.35 16 10 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 11 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 12 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 13 C 0.14 4.07 4.30 86.38 0.37 4.44 16 14 N -0.73 -18.12 5.47 -339.43 -1.86 -19.98 16 15 C 0.24 6.07 6.65 38.15 0.25 6.32 16 16 C -0.18 -4.47 9.22 22.03 0.20 -4.26 16 17 C -0.02 -0.49 10.04 22.48 0.23 -0.26 16 18 C -0.02 -0.40 6.95 39.81 0.28 -0.12 16 19 N -0.48 -11.50 10.56 -190.45 -2.01 -13.51 16 20 C 0.09 1.49 12.41 130.80 1.62 3.12 16 21 S 0.04 0.76 23.39 -56.49 -1.32 -0.56 16 22 C -0.13 -3.07 6.53 22.93 0.15 -2.92 16 23 C -0.18 -4.28 9.92 22.54 0.22 -4.05 16 24 H 0.07 1.76 7.18 -2.39 -0.02 1.74 16 25 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.05 1.73 6.95 -2.39 -0.02 1.72 16 27 H -0.01 -0.57 8.01 -2.39 -0.02 -0.59 16 28 H -0.01 -0.41 8.00 -2.39 -0.02 -0.43 16 29 H 0.26 15.74 7.22 -92.71 -0.67 15.07 16 30 H 0.06 1.72 7.94 -2.39 -0.02 1.70 16 31 H 0.06 1.81 7.96 -2.39 -0.02 1.79 16 32 H 0.41 9.05 7.67 -92.71 -0.71 8.34 16 33 H 0.14 3.29 6.72 -2.91 -0.02 3.27 16 34 H 0.15 3.06 8.06 -2.91 -0.02 3.04 16 35 H 0.24 1.71 8.06 -2.91 -0.02 1.68 16 36 H 0.14 2.83 8.06 -2.91 -0.02 2.81 16 Total: -1.00 -66.36 314.34 2.37 -64.00 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: 0.48 Total: 13.82 kcal Atomic # 6 Polarization: -42.55 SS G_CDS: 4.73 Total: -37.82 kcal Atomic # 7 Polarization: -87.22 SS G_CDS: -3.57 Total: -90.79 kcal Atomic # 14 Polarization: 49.29 SS G_CDS: 2.05 Total: 51.35 kcal Atomic # 16 Polarization: 0.76 SS G_CDS: -1.32 Total: -0.56 kcal Total: -66.36 2.37 -64.00 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602591654.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.542 kcal (2) G-P(sol) polarization free energy of solvation -66.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds