Wall clock time and date at job start Mon Mar 30 2020 01:27:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 C 1.50703 * 109.46801 * 65.00219 * 4 2 1 6 6 H 1.07998 * 120.00413 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99680 * 179.97438 * 5 4 2 8 8 N 1.31523 * 119.99583 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 120.00273 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47042 * 89.99722 * 9 7 5 11 11 H 1.48506 * 109.47062 * 209.99913 * 9 7 5 12 12 H 1.48495 * 109.46994 * 329.99733 * 9 7 5 13 13 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 14 14 N 1.46496 * 109.47484 * 295.00296 * 13 2 1 15 15 C 1.39831 * 120.00326 * 180.02562 * 14 13 2 16 16 C 1.39401 * 120.08505 * 359.72527 * 15 14 13 17 17 C 1.36009 * 120.70760 * 179.67801 * 16 15 14 18 18 C 1.41182 * 120.65733 * 0.63456 * 17 16 15 19 19 N 1.34777 * 128.80226 * 179.69020 * 18 17 16 20 20 C 1.28001 * 118.12062 * 179.97438 * 19 18 17 21 21 S 1.75817 * 110.44027 * 359.97438 * 20 19 18 22 22 C 1.39855 * 118.43863 * 359.64915 * 18 17 16 23 23 C 1.38246 * 120.08645 * 179.97438 * 15 14 13 24 24 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 25 25 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 26 26 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47069 * 184.99942 * 4 2 1 28 28 H 1.08991 * 109.47625 * 305.00262 * 4 2 1 29 29 H 0.97001 * 119.99531 * 179.97438 * 8 7 5 30 30 H 1.09000 * 109.47325 * 55.00085 * 13 2 1 31 31 H 1.09008 * 109.47017 * 174.99994 * 13 2 1 32 32 H 0.97005 * 119.99584 * 359.97438 * 14 13 2 33 33 H 1.08003 * 119.64436 * 359.97062 * 16 15 14 34 34 H 1.08007 * 119.67067 * 180.26124 * 17 16 15 35 35 H 1.08003 * 124.77730 * 180.02562 * 20 19 18 36 36 H 1.07999 * 120.01593 * 0.02713 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 1 1.0808 0.9745 -2.3757 7 6 1.9933 -0.4018 -3.7282 8 7 1.6458 0.2777 -4.7993 9 14 2.9637 -1.9885 -3.9027 10 1 2.0244 -3.1327 -4.0199 11 1 3.8127 -1.9183 -5.1191 12 1 3.8253 -2.1757 -2.7078 13 6 2.0399 -0.7212 1.2493 14 7 1.6523 0.0353 2.4424 15 6 2.0092 -0.4299 3.7118 16 6 2.7288 -1.6164 3.8445 17 6 3.0881 -2.0772 5.0726 18 6 2.7282 -1.3702 6.2404 19 7 2.9893 -1.6756 7.5269 20 6 2.5614 -0.8809 8.4345 21 16 1.7006 0.4707 7.7111 22 6 2.0013 -0.1833 6.1030 23 6 1.6447 0.2829 4.8389 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1264 -0.7995 -1.2055 28 1 1.6055 -1.7198 -1.2951 29 1 1.8938 -0.0449 -5.6799 30 1 1.6053 -1.7198 1.2952 31 1 3.1263 -0.7995 1.2056 32 1 1.1487 0.8594 2.3517 33 1 3.0081 -2.1733 2.9622 34 1 3.6493 -2.9963 5.1557 35 1 2.7092 -1.0205 9.4952 36 1 1.0833 1.2002 4.7399 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602591658.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:37 Heat of formation + Delta-G solvation = 42.853603 kcal Electronic energy + Delta-G solvation = -17915.249632 eV Core-core repulsion = 15104.128000 eV Total energy + Delta-G solvation = -2811.121631 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 276.099 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.35629 -38.13071 -36.15985 -33.65924 -32.09005 -31.18895 -28.84414 -27.45383 -26.16374 -24.22320 -23.26818 -22.38919 -20.90956 -19.45226 -18.45057 -17.23201 -16.88557 -16.26442 -15.67605 -15.03971 -14.75149 -14.50499 -14.16467 -13.96099 -13.47975 -13.41276 -13.05098 -12.80700 -12.59956 -12.30251 -12.00347 -11.77925 -11.17394 -10.96925 -10.90092 -10.64231 -10.22427 -10.11012 -9.85821 -9.77996 -9.76329 -9.67357 -9.21271 -8.61076 -8.38426 -7.34206 -6.11255 -4.09800 0.49865 1.10085 1.20613 1.63803 2.36635 3.25188 3.33518 3.35163 3.40700 3.67270 3.95773 4.38377 4.56634 4.96347 5.08125 5.12494 5.21313 5.26088 5.42461 5.44237 5.64420 5.69025 5.85958 5.98048 6.07193 6.13308 6.15968 6.21263 6.42125 6.59119 6.72171 6.90967 7.10691 7.19306 7.28232 7.52834 7.65003 7.70595 8.45082 8.92710 9.50638 11.01885 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.043294 B = 0.003066 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.580179 B = 9130.287430 C = 9650.184103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.087 4.087 3 H 0.070 0.930 4 C -0.006 4.006 5 C -0.518 4.518 6 H 0.074 0.926 7 C 0.067 3.933 8 N -0.902 5.902 9 Si 0.878 3.122 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.265 1.265 13 C 0.118 3.882 14 N -0.728 5.728 15 C 0.255 3.745 16 C -0.175 4.175 17 C -0.010 4.010 18 C -0.001 4.001 19 N -0.445 5.445 20 C 0.071 3.929 21 S 0.014 5.986 22 C -0.098 4.098 23 C -0.181 4.181 24 H 0.033 0.967 25 H 0.070 0.930 26 H 0.047 0.953 27 H 0.018 0.982 28 H 0.014 0.986 29 H 0.263 0.737 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.403 0.597 33 H 0.137 0.863 34 H 0.134 0.866 35 H 0.202 0.798 36 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.712 -1.884 23.396 23.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.106 4.106 3 H 0.088 0.912 4 C -0.044 4.044 5 C -0.556 4.556 6 H 0.092 0.908 7 C -0.135 4.135 8 N -0.541 5.541 9 Si 0.706 3.294 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.190 1.190 13 C -0.005 4.005 14 N -0.354 5.354 15 C 0.144 3.856 16 C -0.198 4.198 17 C -0.032 4.032 18 C -0.120 4.120 19 N -0.155 5.155 20 C -0.236 4.236 21 S 0.264 5.736 22 C -0.217 4.217 23 C -0.211 4.211 24 H 0.052 0.948 25 H 0.089 0.911 26 H 0.066 0.934 27 H 0.036 0.964 28 H 0.033 0.967 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.239 0.761 33 H 0.155 0.845 34 H 0.151 0.849 35 H 0.219 0.781 36 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 0.609 -1.657 23.587 23.653 hybrid contribution 0.509 -0.898 -0.942 1.397 sum 1.118 -2.555 22.646 22.817 Atomic orbital electron populations 1.21747 0.95355 1.01285 1.00840 1.21258 0.96081 0.99988 0.93307 0.91201 1.19566 0.96101 0.95889 0.92819 1.21065 1.35829 1.09698 0.89021 0.90817 1.25028 0.95545 0.96992 0.95916 1.69910 1.46836 1.39268 0.98094 0.86802 0.80634 0.84185 0.77793 1.20291 1.21390 1.19011 1.21786 0.99403 0.95398 0.83926 1.45132 1.59946 1.27915 1.02378 1.17743 0.90802 0.91730 0.85375 1.20388 1.04048 0.97374 0.98029 1.20211 0.96029 0.98085 0.88857 1.18975 1.06194 0.96324 0.90539 1.66023 1.19789 1.29695 0.99948 1.28622 0.99841 0.92587 1.02526 1.84967 1.60138 1.30559 0.97930 1.23201 1.02726 0.98540 0.97242 1.19508 1.10057 1.03192 0.88343 0.94839 0.91106 0.93421 0.96411 0.96736 0.92681 0.92097 0.92060 0.76128 0.84478 0.84863 0.78117 0.85479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.23 8.88 37.16 0.33 -1.90 16 2 C -0.09 -1.51 2.37 -90.62 -0.22 -1.72 16 3 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 4 C -0.01 -0.13 3.52 -27.88 -0.10 -0.23 16 5 C -0.52 -13.86 8.96 -34.44 -0.31 -14.17 16 6 H 0.07 2.12 7.30 -52.49 -0.38 1.74 16 7 C 0.07 1.87 5.47 -17.82 -0.10 1.77 16 8 N -0.90 -27.05 13.96 55.43 0.77 -26.27 16 9 Si 0.88 20.93 27.47 -169.99 -4.67 16.26 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 12 H -0.27 -6.01 6.54 56.52 0.37 -5.64 16 13 C 0.12 1.66 4.30 -4.05 -0.02 1.64 16 14 N -0.73 -9.04 5.47 -58.64 -0.32 -9.36 16 15 C 0.25 3.18 6.65 -83.77 -0.56 2.62 16 16 C -0.17 -2.10 9.22 -39.95 -0.37 -2.46 16 17 C -0.01 -0.12 10.04 -39.26 -0.39 -0.52 16 18 C 0.00 -0.02 6.95 -84.85 -0.59 -0.61 16 19 N -0.44 -5.61 10.56 -11.58 -0.12 -5.73 16 20 C 0.07 0.69 12.41 51.17 0.63 1.32 16 21 S 0.01 0.14 23.39 -107.50 -2.51 -2.37 16 22 C -0.10 -1.24 6.53 -38.56 -0.25 -1.49 16 23 C -0.18 -2.21 9.92 -39.16 -0.39 -2.60 16 24 H 0.03 0.46 7.18 -51.93 -0.37 0.09 16 25 H 0.07 1.34 6.95 -51.93 -0.36 0.98 16 26 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.02 0.39 7.20 -51.93 -0.37 0.01 16 28 H 0.01 0.31 7.57 -51.93 -0.39 -0.08 16 29 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 30 H 0.06 0.84 7.94 -51.93 -0.41 0.42 16 31 H 0.06 0.86 7.96 -51.92 -0.41 0.44 16 32 H 0.40 4.61 7.67 -40.82 -0.31 4.30 16 33 H 0.14 1.49 6.72 -52.48 -0.35 1.14 16 34 H 0.13 1.35 8.06 -52.48 -0.42 0.93 16 35 H 0.20 1.09 8.06 -52.48 -0.42 0.67 16 36 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 LS Contribution 312.06 15.07 4.70 4.70 Total: -1.00 -30.39 312.06 -9.13 -39.52 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -4.66 Total: 1.60 kcal Atomic # 6 Polarization: -16.02 SS G_CDS: -2.32 Total: -18.35 kcal Atomic # 7 Polarization: -41.69 SS G_CDS: 0.33 Total: -41.36 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.67 Total: 16.26 kcal Atomic # 16 Polarization: 0.14 SS G_CDS: -2.51 Total: -2.37 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -30.39 -9.13 -39.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602591658.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.372 kcal (2) G-P(sol) polarization free energy of solvation -30.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds