Wall clock time and date at job start Mon Mar 30 2020 01:27:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 C 1.50703 * 109.46801 * 65.00219 * 4 2 1 6 6 H 1.07998 * 120.00413 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99680 * 179.97438 * 5 4 2 8 8 N 1.31523 * 119.99583 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 120.00273 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47042 * 89.99722 * 9 7 5 11 11 H 1.48506 * 109.47062 * 209.99913 * 9 7 5 12 12 H 1.48495 * 109.46994 * 329.99733 * 9 7 5 13 13 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 14 14 N 1.46496 * 109.47484 * 295.00296 * 13 2 1 15 15 C 1.39831 * 120.00326 * 180.02562 * 14 13 2 16 16 C 1.39401 * 120.08505 * 359.72527 * 15 14 13 17 17 C 1.36009 * 120.70760 * 179.67801 * 16 15 14 18 18 C 1.41182 * 120.65733 * 0.63456 * 17 16 15 19 19 N 1.34777 * 128.80226 * 179.69020 * 18 17 16 20 20 C 1.28001 * 118.12062 * 179.97438 * 19 18 17 21 21 S 1.75817 * 110.44027 * 359.97438 * 20 19 18 22 22 C 1.39855 * 118.43863 * 359.64915 * 18 17 16 23 23 C 1.38246 * 120.08645 * 179.97438 * 15 14 13 24 24 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 25 25 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 26 26 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47069 * 184.99942 * 4 2 1 28 28 H 1.08991 * 109.47625 * 305.00262 * 4 2 1 29 29 H 0.97001 * 119.99531 * 179.97438 * 8 7 5 30 30 H 1.09000 * 109.47325 * 55.00085 * 13 2 1 31 31 H 1.09008 * 109.47017 * 174.99994 * 13 2 1 32 32 H 0.97005 * 119.99584 * 359.97438 * 14 13 2 33 33 H 1.08003 * 119.64436 * 359.97062 * 16 15 14 34 34 H 1.08007 * 119.67067 * 180.26124 * 17 16 15 35 35 H 1.08003 * 124.77730 * 180.02562 * 20 19 18 36 36 H 1.07999 * 120.01593 * 0.02713 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 1 1.0808 0.9745 -2.3757 7 6 1.9933 -0.4018 -3.7282 8 7 1.6458 0.2777 -4.7993 9 14 2.9637 -1.9885 -3.9027 10 1 2.0244 -3.1327 -4.0199 11 1 3.8127 -1.9183 -5.1191 12 1 3.8253 -2.1757 -2.7078 13 6 2.0399 -0.7212 1.2493 14 7 1.6523 0.0353 2.4424 15 6 2.0092 -0.4299 3.7118 16 6 2.7288 -1.6164 3.8445 17 6 3.0881 -2.0772 5.0726 18 6 2.7282 -1.3702 6.2404 19 7 2.9893 -1.6756 7.5269 20 6 2.5614 -0.8809 8.4345 21 16 1.7006 0.4707 7.7111 22 6 2.0013 -0.1833 6.1030 23 6 1.6447 0.2829 4.8389 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1264 -0.7995 -1.2055 28 1 1.6055 -1.7198 -1.2951 29 1 1.8938 -0.0449 -5.6799 30 1 1.6053 -1.7198 1.2952 31 1 3.1263 -0.7995 1.2056 32 1 1.1487 0.8594 2.3517 33 1 3.0081 -2.1733 2.9622 34 1 3.6493 -2.9963 5.1557 35 1 2.7092 -1.0205 9.4952 36 1 1.0833 1.2002 4.7399 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602591658.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:37 Heat of formation + Delta-G solvation = 24.314971 kcal Electronic energy + Delta-G solvation = -17916.053527 eV Core-core repulsion = 15104.128000 eV Total energy + Delta-G solvation = -2811.925527 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 276.099 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.22997 -39.14033 -37.38641 -35.10094 -33.80980 -32.09552 -30.11175 -28.92602 -27.29856 -25.33016 -24.23597 -23.85018 -21.84499 -20.87708 -19.32317 -18.98856 -18.04194 -17.25803 -16.63377 -16.33510 -16.02986 -15.57466 -15.50495 -15.01955 -14.80022 -14.44622 -14.28057 -14.11395 -13.83680 -13.52439 -13.28285 -13.05696 -12.83872 -12.54783 -12.22157 -11.76911 -11.71320 -11.60959 -11.35545 -11.11097 -11.08009 -10.73423 -10.69775 -10.59126 -9.21460 -8.26601 -8.25690 -6.28501 -0.33920 0.20627 0.39699 0.82311 1.38353 1.40166 1.50810 1.50973 2.38547 2.41438 2.77432 3.10357 3.20920 3.71440 3.98236 4.13964 4.15102 4.18253 4.35136 4.36440 4.60700 4.71707 4.73112 4.85394 4.89068 5.01391 5.07346 5.20445 5.24166 5.26181 5.36916 5.48659 5.55790 5.65773 5.70959 6.22288 6.33846 6.68721 6.74029 6.79830 7.35438 8.90879 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.043294 B = 0.003066 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.580179 B = 9130.287430 C = 9650.184103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.081 4.081 3 H 0.060 0.940 4 C -0.006 4.006 5 C -0.519 4.519 6 H 0.036 0.964 7 C 0.000 4.000 8 N -0.955 5.955 9 Si 0.946 3.054 10 H -0.269 1.269 11 H -0.290 1.290 12 H -0.241 1.241 13 C 0.133 3.867 14 N -0.727 5.727 15 C 0.244 3.756 16 C -0.177 4.177 17 C -0.020 4.020 18 C -0.017 4.017 19 N -0.477 5.477 20 C 0.087 3.913 21 S 0.035 5.965 22 C -0.125 4.125 23 C -0.183 4.183 24 H 0.062 0.938 25 H 0.036 0.964 26 H 0.051 0.949 27 H 0.023 0.977 28 H 0.023 0.977 29 H 0.264 0.736 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.407 0.593 33 H 0.148 0.852 34 H 0.147 0.853 35 H 0.243 0.757 36 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.425 -3.252 25.986 26.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.100 4.100 3 H 0.078 0.922 4 C -0.044 4.044 5 C -0.557 4.557 6 H 0.054 0.946 7 C -0.196 4.196 8 N -0.596 5.596 9 Si 0.770 3.230 10 H -0.194 1.194 11 H -0.217 1.217 12 H -0.164 1.164 13 C 0.009 3.991 14 N -0.354 5.354 15 C 0.134 3.866 16 C -0.200 4.200 17 C -0.041 4.041 18 C -0.136 4.136 19 N -0.187 5.187 20 C -0.220 4.220 21 S 0.286 5.714 22 C -0.244 4.244 23 C -0.213 4.213 24 H 0.081 0.919 25 H 0.055 0.945 26 H 0.070 0.930 27 H 0.041 0.959 28 H 0.041 0.959 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.243 0.757 33 H 0.166 0.834 34 H 0.165 0.835 35 H 0.259 0.741 36 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 1.316 -3.017 26.216 26.422 hybrid contribution 0.228 -0.361 -1.596 1.652 sum 1.545 -3.378 24.620 24.899 Atomic orbital electron populations 1.21668 0.94951 1.01451 1.00606 1.21071 0.96372 0.99335 0.93203 0.92172 1.19528 0.96416 0.95865 0.92572 1.21443 1.34358 1.08721 0.91198 0.94611 1.26008 0.97031 1.00955 0.95586 1.70078 1.49098 1.41692 0.98762 0.85712 0.79367 0.79488 0.78408 1.19385 1.21655 1.16447 1.21485 0.99533 0.95266 0.82849 1.44911 1.60532 1.28085 1.01919 1.17801 0.91417 0.92175 0.85219 1.20540 1.03769 0.97289 0.98438 1.20422 0.96289 0.98672 0.88727 1.19310 1.06315 0.96706 0.91273 1.66084 1.21571 1.31007 1.00082 1.29422 0.97425 0.91226 1.03884 1.84882 1.59775 1.30381 0.96391 1.23479 1.03356 0.99067 0.98497 1.19662 1.09873 1.03486 0.88307 0.91882 0.94521 0.92993 0.95906 0.95902 0.92745 0.91192 0.91632 0.75664 0.83429 0.83522 0.74125 0.84475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.19 8.88 71.98 0.64 -3.55 16 2 C -0.08 -2.71 2.37 -10.79 -0.03 -2.73 16 3 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 4 C -0.01 -0.25 3.52 29.85 0.10 -0.15 16 5 C -0.52 -28.33 8.96 25.60 0.23 -28.10 16 6 H 0.04 2.16 7.30 -2.91 -0.02 2.14 16 7 C 0.00 0.02 5.47 84.65 0.46 0.48 16 8 N -0.95 -59.06 13.96 21.45 0.30 -58.76 16 9 Si 0.95 42.79 27.47 68.60 1.88 44.68 16 10 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 11 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 12 H -0.24 -9.88 6.54 99.48 0.65 -9.23 16 13 C 0.13 3.42 4.30 86.38 0.37 3.79 16 14 N -0.73 -16.63 5.47 -339.43 -1.86 -18.49 16 15 C 0.24 5.66 6.65 38.15 0.25 5.92 16 16 C -0.18 -3.92 9.22 22.03 0.20 -3.72 16 17 C -0.02 -0.45 10.04 22.47 0.23 -0.22 16 18 C -0.02 -0.43 6.95 39.81 0.28 -0.16 16 19 N -0.48 -11.12 10.56 -190.46 -2.01 -13.13 16 20 C 0.09 1.44 12.41 130.80 1.62 3.06 16 21 S 0.04 0.64 23.39 -56.49 -1.32 -0.69 16 22 C -0.12 -2.97 6.53 22.93 0.15 -2.82 16 23 C -0.18 -4.21 9.92 22.54 0.22 -3.98 16 24 H 0.06 1.64 7.18 -2.39 -0.02 1.63 16 25 H 0.04 1.42 6.95 -2.39 -0.02 1.40 16 26 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.02 0.95 7.20 -2.39 -0.02 0.93 16 28 H 0.02 0.94 7.57 -2.39 -0.02 0.92 16 29 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 30 H 0.07 1.71 7.94 -2.39 -0.02 1.69 16 31 H 0.07 1.66 7.96 -2.38 -0.02 1.64 16 32 H 0.41 8.58 7.67 -92.70 -0.71 7.86 16 33 H 0.15 2.86 6.72 -2.91 -0.02 2.84 16 34 H 0.15 2.76 8.06 -2.91 -0.02 2.74 16 35 H 0.24 1.66 8.06 -2.91 -0.02 1.63 16 36 H 0.14 2.73 8.06 -2.91 -0.02 2.71 16 Total: -1.00 -66.93 312.06 2.06 -64.87 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: 0.33 Total: 13.69 kcal Atomic # 6 Polarization: -36.91 SS G_CDS: 4.74 Total: -32.18 kcal Atomic # 7 Polarization: -86.81 SS G_CDS: -3.57 Total: -90.38 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 1.88 Total: 44.68 kcal Atomic # 16 Polarization: 0.64 SS G_CDS: -1.32 Total: -0.69 kcal Total: -66.93 2.06 -64.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602591658.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.189 kcal (2) G-P(sol) polarization free energy of solvation -66.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds