Wall clock time and date at job start Mon Mar 30 2020 02:01:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35896 * 117.00062 * 2 1 4 4 C 1.38754 * 120.05436 * 359.97438 * 3 2 1 5 5 C 1.38125 * 119.94469 * 180.02562 * 4 3 2 6 6 C 1.38290 * 120.05346 * 359.93309 * 5 4 3 7 7 C 1.38243 * 120.11447 * 0.02562 * 6 5 4 8 8 C 1.38168 * 120.05226 * 0.02562 * 7 6 5 9 9 C 1.50695 * 120.02294 * 179.70416 * 8 7 6 10 10 C 1.50701 * 109.47212 * 264.99690 * 9 8 7 11 11 C 1.50699 * 119.99960 * 268.99745 * 10 9 8 12 12 C 1.33153 * 120.00090 * 88.99718 * 10 9 8 13 13 C 1.46876 * 119.99775 * 2.91334 * 12 10 9 14 14 O 1.21572 * 120.00358 * 6.21981 * 13 12 10 15 15 O 1.34806 * 120.00010 * 186.22345 * 13 12 10 16 16 C 1.34836 * 117.00468 * 180.02562 * 15 13 12 17 17 H 1.08009 * 119.99276 * 359.97438 * 16 15 13 18 18 C 1.38829 * 120.00582 * 179.97438 * 16 15 13 19 19 N 1.31406 * 119.99520 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00128 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47264 * 60.00190 * 20 18 16 22 22 H 1.48494 * 109.47020 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47191 * 300.00100 * 20 18 16 24 24 H 1.08997 * 109.47405 * 300.00056 * 1 2 3 25 25 H 1.09000 * 109.46865 * 60.00564 * 1 2 3 26 26 H 1.08999 * 109.46918 * 180.02562 * 1 2 3 27 27 H 1.08004 * 120.02838 * 0.05059 * 4 3 2 28 28 H 1.07997 * 119.97424 * 179.97438 * 5 4 3 29 29 H 1.08008 * 119.94033 * 180.02562 * 6 5 4 30 30 H 1.07995 * 119.96977 * 179.97438 * 7 6 5 31 31 H 1.08999 * 109.47313 * 24.99812 * 9 8 7 32 32 H 1.09007 * 109.47435 * 144.99966 * 9 8 7 33 33 H 1.09004 * 109.46965 * 89.99811 * 11 10 9 34 34 H 1.08999 * 109.46922 * 209.99860 * 11 10 9 35 35 H 1.08999 * 109.46998 * 329.99764 * 11 10 9 36 36 H 1.07993 * 119.99867 * 182.91517 * 12 10 9 37 37 H 0.96999 * 120.00062 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3752 -0.0005 5 6 1.9208 3.6047 -0.0011 6 6 3.3019 3.6757 0.0003 7 6 4.0560 2.5171 0.0017 8 6 3.4311 1.2848 0.0012 9 6 4.2537 0.0222 -0.0040 10 6 4.4196 -0.4634 -1.4209 11 6 3.4262 -1.4338 -2.0061 12 6 5.4440 -0.0351 -2.1559 13 6 6.4476 0.8603 -1.5657 14 8 6.4075 1.1201 -0.3788 15 8 7.4133 1.3941 -2.3402 16 6 8.3032 2.2071 -1.7359 17 1 8.2218 2.4047 -0.6772 18 6 9.3239 2.7902 -2.4745 19 7 9.4225 2.5501 -3.7626 20 14 10.5562 3.9171 -1.6373 21 1 11.2680 3.1674 -0.5713 22 1 11.5377 4.4075 -2.6379 23 1 9.8422 5.0727 -1.0374 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 0.2127 2.3203 -0.0001 28 1 1.3340 4.5113 -0.0019 29 1 3.7922 4.6381 0.0003 30 1 5.1344 2.5753 0.0024 31 1 5.2338 0.2253 0.4275 32 1 3.7487 -0.7430 0.5855 33 1 2.6166 -0.8815 -2.4833 34 1 3.9235 -2.0612 -2.7458 35 1 3.0198 -2.0606 -1.2123 36 1 5.5369 -0.3461 -3.1859 37 1 10.1354 2.9578 -4.2788 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000730341992.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:21 Heat of formation + Delta-G solvation = -67.819323 kcal Electronic energy + Delta-G solvation = -21326.195158 eV Core-core repulsion = 18035.228766 eV Total energy + Delta-G solvation = -3290.966392 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.13487 -39.01440 -37.22347 -36.09193 -34.31833 -32.16394 -31.43514 -29.81094 -27.86180 -27.44686 -26.26502 -25.10845 -21.89881 -21.66114 -20.76718 -18.22041 -17.74122 -17.57256 -16.48110 -16.01335 -15.67589 -15.44073 -14.71185 -14.48726 -14.27266 -14.03344 -13.78100 -13.25501 -13.22966 -12.80530 -12.55801 -12.38326 -12.00829 -11.89379 -11.63731 -11.43724 -11.23335 -11.11556 -10.95392 -10.80682 -10.56004 -10.42755 -10.26706 -9.79974 -8.72187 -8.56761 -8.44273 -8.28820 -7.85347 -6.41198 -4.04715 1.60417 1.73319 2.01019 3.18978 3.19491 3.23410 3.40107 3.98698 4.05409 4.13045 4.71900 4.91687 5.05744 5.08223 5.14537 5.18482 5.37009 5.38298 5.44559 5.61430 5.66979 5.72825 5.86431 5.90814 6.08948 6.14114 6.19485 6.38483 6.51895 6.56514 6.71675 6.79156 7.00316 7.01848 7.20201 7.28870 7.51666 7.59735 7.99511 8.82013 9.07483 9.91782 10.76683 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.023957 B = 0.004956 C = 0.004353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.466060 B = 5648.648237 C = 6430.314342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.311 6.311 3 C 0.119 3.881 4 C -0.218 4.218 5 C -0.093 4.093 6 C -0.159 4.159 7 C -0.070 4.070 8 C -0.087 4.087 9 C -0.083 4.083 10 C -0.051 4.051 11 C -0.111 4.111 12 C -0.174 4.174 13 C 0.429 3.571 14 O -0.550 6.550 15 O -0.207 6.207 16 C -0.376 4.376 17 H 0.097 0.903 18 C 0.041 3.959 19 N -0.861 5.861 20 Si 0.943 3.057 21 H -0.269 1.269 22 H -0.279 1.279 23 H -0.269 1.269 24 H 0.050 0.950 25 H 0.051 0.949 26 H 0.095 0.905 27 H 0.120 0.880 28 H 0.117 0.883 29 H 0.120 0.880 30 H 0.156 0.844 31 H 0.146 0.854 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.062 0.938 35 H 0.068 0.932 36 H 0.124 0.876 37 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.885 -3.141 5.266 17.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.225 6.225 3 C 0.074 3.926 4 C -0.236 4.236 5 C -0.112 4.112 6 C -0.177 4.177 7 C -0.087 4.087 8 C -0.088 4.088 9 C -0.119 4.119 10 C -0.052 4.052 11 C -0.167 4.167 12 C -0.193 4.193 13 C 0.280 3.720 14 O -0.452 6.452 15 O -0.113 6.113 16 C -0.452 4.452 17 H 0.115 0.885 18 C -0.164 4.164 19 N -0.498 5.498 20 Si 0.768 3.232 21 H -0.194 1.194 22 H -0.204 1.204 23 H -0.195 1.195 24 H 0.069 0.931 25 H 0.070 0.930 26 H 0.113 0.887 27 H 0.138 0.862 28 H 0.135 0.865 29 H 0.138 0.862 30 H 0.174 0.826 31 H 0.163 0.837 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.142 0.858 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -15.649 -3.203 5.330 16.839 hybrid contribution 0.159 0.779 0.124 0.804 sum -15.490 -2.425 5.455 16.600 Atomic orbital electron populations 1.22972 0.79415 1.03360 1.00967 1.86087 1.20378 1.27049 1.88945 1.18926 0.91941 0.83893 0.97836 1.21064 0.99291 0.92545 1.10735 1.20854 0.94751 0.96587 0.98965 1.21169 0.93705 0.98820 1.04025 1.21785 1.02438 0.90502 0.93987 1.19111 0.89473 0.95898 1.04321 1.20447 1.04449 0.93231 0.93772 1.22181 0.93425 0.94226 0.95398 1.20826 0.97714 0.97518 1.00690 1.21771 0.95545 1.01660 1.00354 1.21090 0.83184 0.82372 0.85323 1.90254 1.75682 1.62130 1.17106 1.83968 1.34454 1.52867 1.40061 1.21211 1.05611 1.23249 0.95170 0.88541 1.25367 0.97637 0.97830 0.95526 1.69975 1.31975 1.41746 1.06057 0.85749 0.79256 0.79686 0.78539 1.19448 1.20421 1.19451 0.93112 0.93035 0.88663 0.86187 0.86505 0.86180 0.82646 0.83716 0.91704 0.91345 0.91858 0.91345 0.85789 0.91979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.81 101.05 0.99 1.25 16 2 O -0.31 -4.20 9.40 -19.41 -0.18 -4.38 16 3 C 0.12 1.84 6.66 -39.22 -0.26 1.58 16 4 C -0.22 -3.01 9.04 -39.43 -0.36 -3.36 16 5 C -0.09 -1.32 10.04 -39.60 -0.40 -1.71 16 6 C -0.16 -2.59 10.04 -39.56 -0.40 -2.98 16 7 C -0.07 -1.31 9.30 -39.61 -0.37 -1.68 16 8 C -0.09 -1.56 5.13 -104.48 -0.54 -2.09 16 9 C -0.08 -1.49 4.73 -29.04 -0.14 -1.63 16 10 C -0.05 -0.89 5.35 -101.12 -0.54 -1.44 16 11 C -0.11 -1.50 9.81 36.01 0.35 -1.15 16 12 C -0.17 -3.52 9.75 -37.86 -0.37 -3.89 16 13 C 0.43 10.61 7.65 34.23 0.26 10.87 16 14 O -0.55 -13.61 9.16 -19.32 -0.18 -13.79 16 15 O -0.21 -5.98 9.75 -21.79 -0.21 -6.19 16 16 C -0.38 -10.98 9.65 30.95 0.30 -10.68 16 17 H 0.10 2.77 6.86 -52.48 -0.36 2.41 16 18 C 0.04 1.15 5.50 -17.52 -0.10 1.05 16 19 N -0.86 -25.29 13.67 55.49 0.76 -24.53 16 20 Si 0.94 21.15 29.55 -169.99 -5.02 16.13 16 21 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16 22 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 23 H -0.27 -5.89 7.11 56.52 0.40 -5.48 16 24 H 0.05 0.41 7.66 -51.93 -0.40 0.01 16 25 H 0.05 0.42 7.66 -51.93 -0.40 0.03 16 26 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.12 1.31 6.30 -52.48 -0.33 0.98 16 28 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 29 H 0.12 1.77 8.06 -52.48 -0.42 1.35 16 30 H 0.16 3.34 5.27 -52.49 -0.28 3.06 16 31 H 0.15 2.97 4.66 -54.52 -0.25 2.72 16 32 H 0.06 1.05 7.58 -51.92 -0.39 0.66 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.06 0.77 8.07 -51.93 -0.42 0.35 16 35 H 0.07 0.84 8.03 -51.93 -0.42 0.43 16 36 H 0.12 2.31 8.06 -52.49 -0.42 1.89 16 37 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 316.17 15.07 4.76 4.76 Total: -1.00 -31.94 316.17 -6.12 -38.06 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -4.50 Total: 5.80 kcal Atomic # 6 Polarization: -14.30 SS G_CDS: -1.56 Total: -15.85 kcal Atomic # 7 Polarization: -25.29 SS G_CDS: 0.76 Total: -24.53 kcal Atomic # 8 Polarization: -23.79 SS G_CDS: -0.57 Total: -24.36 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -31.94 -6.12 -38.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730341992.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.758 kcal (2) G-P(sol) polarization free energy of solvation -31.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds