Wall clock time and date at job start Mon Mar 30 2020 02:01:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35896 * 117.00062 * 2 1 4 4 C 1.38754 * 120.05436 * 359.97438 * 3 2 1 5 5 C 1.38125 * 119.94469 * 180.02562 * 4 3 2 6 6 C 1.38290 * 120.05346 * 359.93309 * 5 4 3 7 7 C 1.38243 * 120.11447 * 0.02562 * 6 5 4 8 8 C 1.38168 * 120.05226 * 0.02562 * 7 6 5 9 9 C 1.50695 * 120.02294 * 179.70416 * 8 7 6 10 10 C 1.50701 * 109.47212 * 264.99690 * 9 8 7 11 11 C 1.50699 * 119.99960 * 268.99745 * 10 9 8 12 12 C 1.33153 * 120.00090 * 88.99718 * 10 9 8 13 13 C 1.46876 * 119.99775 * 2.91334 * 12 10 9 14 14 O 1.21572 * 120.00358 * 6.21981 * 13 12 10 15 15 O 1.34806 * 120.00010 * 186.22345 * 13 12 10 16 16 C 1.34836 * 117.00468 * 180.02562 * 15 13 12 17 17 H 1.08009 * 119.99276 * 359.97438 * 16 15 13 18 18 C 1.38829 * 120.00582 * 179.97438 * 16 15 13 19 19 N 1.31406 * 119.99520 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00128 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47264 * 60.00190 * 20 18 16 22 22 H 1.48494 * 109.47020 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47191 * 300.00100 * 20 18 16 24 24 H 1.08997 * 109.47405 * 300.00056 * 1 2 3 25 25 H 1.09000 * 109.46865 * 60.00564 * 1 2 3 26 26 H 1.08999 * 109.46918 * 180.02562 * 1 2 3 27 27 H 1.08004 * 120.02838 * 0.05059 * 4 3 2 28 28 H 1.07997 * 119.97424 * 179.97438 * 5 4 3 29 29 H 1.08008 * 119.94033 * 180.02562 * 6 5 4 30 30 H 1.07995 * 119.96977 * 179.97438 * 7 6 5 31 31 H 1.08999 * 109.47313 * 24.99812 * 9 8 7 32 32 H 1.09007 * 109.47435 * 144.99966 * 9 8 7 33 33 H 1.09004 * 109.46965 * 89.99811 * 11 10 9 34 34 H 1.08999 * 109.46922 * 209.99860 * 11 10 9 35 35 H 1.08999 * 109.46998 * 329.99764 * 11 10 9 36 36 H 1.07993 * 119.99867 * 182.91517 * 12 10 9 37 37 H 0.96999 * 120.00062 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3752 -0.0005 5 6 1.9208 3.6047 -0.0011 6 6 3.3019 3.6757 0.0003 7 6 4.0560 2.5171 0.0017 8 6 3.4311 1.2848 0.0012 9 6 4.2537 0.0222 -0.0040 10 6 4.4196 -0.4634 -1.4209 11 6 3.4262 -1.4338 -2.0061 12 6 5.4440 -0.0351 -2.1559 13 6 6.4476 0.8603 -1.5657 14 8 6.4075 1.1201 -0.3788 15 8 7.4133 1.3941 -2.3402 16 6 8.3032 2.2071 -1.7359 17 1 8.2218 2.4047 -0.6772 18 6 9.3239 2.7902 -2.4745 19 7 9.4225 2.5501 -3.7626 20 14 10.5562 3.9171 -1.6373 21 1 11.2680 3.1674 -0.5713 22 1 11.5377 4.4075 -2.6379 23 1 9.8422 5.0727 -1.0374 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 0.2127 2.3203 -0.0001 28 1 1.3340 4.5113 -0.0019 29 1 3.7922 4.6381 0.0003 30 1 5.1344 2.5753 0.0024 31 1 5.2338 0.2253 0.4275 32 1 3.7487 -0.7430 0.5855 33 1 2.6166 -0.8815 -2.4833 34 1 3.9235 -2.0612 -2.7458 35 1 3.0198 -2.0606 -1.2123 36 1 5.5369 -0.3461 -3.1859 37 1 10.1354 2.9578 -4.2788 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000730341992.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:21 Heat of formation + Delta-G solvation = -86.679075 kcal Electronic energy + Delta-G solvation = -21327.012978 eV Core-core repulsion = 18035.228766 eV Total energy + Delta-G solvation = -3291.784212 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.45091 -40.77555 -38.46872 -37.74128 -36.05840 -34.28080 -32.72896 -30.98425 -29.38733 -28.33531 -27.53625 -27.10564 -23.34684 -22.92431 -22.30046 -19.98858 -19.54156 -18.89753 -18.30060 -17.13823 -16.84843 -16.68377 -16.45477 -16.29642 -16.00076 -15.28587 -15.09655 -14.68725 -14.48289 -14.36339 -13.74206 -13.69828 -13.51768 -13.32507 -13.11386 -12.78791 -12.72957 -12.44950 -12.31298 -12.16003 -12.08477 -11.96716 -11.92617 -11.67215 -10.66797 -10.37310 -9.98264 -9.73126 -9.04261 -8.51762 -6.28097 0.24926 0.48845 0.53847 1.33880 1.42544 1.50090 2.14650 2.24244 2.44737 2.82495 2.94925 3.05272 3.89013 3.95322 4.00106 4.14739 4.25957 4.35709 4.48010 4.50594 4.53139 4.62332 4.67014 4.76814 4.81150 4.84466 4.89594 5.08493 5.12723 5.13435 5.23824 5.37934 5.49472 5.53949 5.69617 5.82363 5.87239 6.00128 6.53015 6.81739 6.93867 7.86238 8.69562 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.023957 B = 0.004956 C = 0.004353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.466060 B = 5648.648237 C = 6430.314342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.321 6.321 3 C 0.124 3.876 4 C -0.210 4.210 5 C -0.084 4.084 6 C -0.175 4.175 7 C -0.100 4.100 8 C -0.112 4.112 9 C -0.084 4.084 10 C -0.010 4.010 11 C -0.108 4.108 12 C -0.217 4.217 13 C 0.429 3.571 14 O -0.556 6.556 15 O -0.248 6.248 16 C -0.413 4.413 17 H 0.085 0.915 18 C -0.008 4.008 19 N -0.906 5.906 20 Si 1.017 2.983 21 H -0.261 1.261 22 H -0.261 1.261 23 H -0.261 1.261 24 H 0.063 0.937 25 H 0.063 0.937 26 H 0.120 0.880 27 H 0.159 0.841 28 H 0.154 0.846 29 H 0.125 0.875 30 H 0.114 0.886 31 H 0.112 0.888 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.137 0.863 37 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.130 -3.465 5.812 20.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.235 6.235 3 C 0.079 3.921 4 C -0.229 4.229 5 C -0.101 4.101 6 C -0.194 4.194 7 C -0.118 4.118 8 C -0.113 4.113 9 C -0.120 4.120 10 C -0.011 4.011 11 C -0.164 4.164 12 C -0.236 4.236 13 C 0.281 3.719 14 O -0.456 6.456 15 O -0.156 6.156 16 C -0.489 4.489 17 H 0.103 0.897 18 C -0.208 4.208 19 N -0.544 5.544 20 Si 0.836 3.164 21 H -0.186 1.186 22 H -0.185 1.185 23 H -0.186 1.186 24 H 0.081 0.919 25 H 0.082 0.918 26 H 0.138 0.862 27 H 0.177 0.823 28 H 0.171 0.829 29 H 0.143 0.857 30 H 0.132 0.868 31 H 0.129 0.871 32 H 0.103 0.897 33 H 0.102 0.898 34 H 0.100 0.900 35 H 0.108 0.892 36 H 0.155 0.845 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -18.927 -3.552 5.894 20.139 hybrid contribution 0.830 0.740 0.093 1.116 sum -18.097 -2.812 5.988 19.268 Atomic orbital electron populations 1.23355 0.76705 1.05572 1.02128 1.86065 1.23054 1.25878 1.88473 1.18878 0.91042 0.85464 0.96749 1.21501 1.01145 0.91543 1.08673 1.21245 0.93666 0.98440 0.96790 1.21305 0.95160 0.98094 1.04791 1.21536 1.00779 0.92555 0.96949 1.19019 0.91000 0.94796 1.06463 1.20331 1.03102 0.94483 0.94082 1.22721 0.92048 0.91765 0.94549 1.20943 0.96838 0.96875 1.01762 1.21752 0.96493 1.03648 1.01682 1.22072 0.82771 0.81675 0.85384 1.90302 1.75679 1.62099 1.17529 1.83985 1.35961 1.54346 1.41342 1.21412 1.07201 1.25141 0.95120 0.89702 1.26563 0.99066 0.98912 0.96210 1.70074 1.33277 1.43363 1.07652 0.84694 0.76510 0.77384 0.77837 1.18562 1.18535 1.18552 0.91853 0.91826 0.86150 0.82344 0.82884 0.85742 0.86815 0.87108 0.89658 0.89823 0.89994 0.89193 0.84488 0.91321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.81 113.37 1.11 1.33 16 2 O -0.32 -7.42 9.40 -92.38 -0.87 -8.28 16 3 C 0.12 3.53 6.66 22.51 0.15 3.68 16 4 C -0.21 -5.00 9.04 22.37 0.20 -4.80 16 5 C -0.08 -2.12 10.04 22.26 0.22 -1.90 16 6 C -0.18 -5.73 10.04 22.28 0.22 -5.51 16 7 C -0.10 -3.96 9.30 22.25 0.21 -3.75 16 8 C -0.11 -3.99 5.13 -19.77 -0.10 -4.09 16 9 C -0.08 -3.02 4.73 29.10 0.14 -2.89 16 10 C -0.01 -0.34 5.35 -17.59 -0.09 -0.43 16 11 C -0.11 -2.57 9.81 71.24 0.70 -1.88 16 12 C -0.22 -9.06 9.75 23.39 0.23 -8.83 16 13 C 0.43 22.75 7.65 70.08 0.54 23.29 16 14 O -0.56 -29.77 9.16 19.60 0.18 -29.59 16 15 O -0.25 -15.37 9.75 10.78 0.11 -15.26 16 16 C -0.41 -25.72 9.65 67.96 0.66 -25.06 16 17 H 0.09 5.27 6.86 -2.91 -0.02 5.25 16 18 C -0.01 -0.46 5.50 84.90 0.47 0.01 16 19 N -0.91 -55.42 13.67 21.64 0.30 -55.12 16 20 Si 1.02 44.61 29.55 68.60 2.03 46.64 16 21 H -0.26 -10.99 7.11 99.48 0.71 -10.29 16 22 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 23 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 24 H 0.06 0.69 7.66 -2.39 -0.02 0.67 16 25 H 0.06 0.71 7.66 -2.39 -0.02 0.69 16 26 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.16 2.54 6.30 -2.91 -0.02 2.52 16 28 H 0.15 2.76 8.06 -2.91 -0.02 2.74 16 29 H 0.12 3.78 8.06 -2.91 -0.02 3.76 16 30 H 0.11 5.40 5.27 -2.91 -0.02 5.38 16 31 H 0.11 4.83 4.66 -43.39 -0.20 4.63 16 32 H 0.09 2.67 7.58 -2.38 -0.02 2.65 16 33 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 34 H 0.08 1.72 8.07 -2.39 -0.02 1.70 16 35 H 0.09 1.83 8.03 -2.39 -0.02 1.81 16 36 H 0.14 5.26 8.06 -2.91 -0.02 5.23 16 37 H 0.28 15.41 8.31 -92.71 -0.77 14.64 16 Total: -1.00 -75.71 316.17 7.28 -68.43 By element: Atomic # 1 Polarization: 23.15 SS G_CDS: 0.89 Total: 24.04 kcal Atomic # 6 Polarization: -35.50 SS G_CDS: 4.65 Total: -30.85 kcal Atomic # 7 Polarization: -55.42 SS G_CDS: 0.30 Total: -55.12 kcal Atomic # 8 Polarization: -52.55 SS G_CDS: -0.58 Total: -53.14 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -75.71 7.28 -68.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730341992.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.250 kcal (2) G-P(sol) polarization free energy of solvation -75.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds