Wall clock time and date at job start Mon Mar 30 2020 02:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47189 * 2 1 4 4 C 1.50696 * 109.47528 * 120.00647 * 2 1 3 5 5 O 1.20762 * 119.99750 * 334.99779 * 4 2 1 6 6 C 1.50692 * 120.00354 * 154.99333 * 4 2 1 7 7 O 1.45204 * 109.47412 * 179.97438 * 6 4 2 8 8 C 1.34706 * 117.00215 * 180.02562 * 7 6 4 9 9 O 1.21467 * 119.99541 * 0.02562 * 8 7 6 10 10 C 1.47771 * 120.00017 * 180.02562 * 8 7 6 11 11 C 1.39966 * 120.02762 * 359.97438 * 10 8 7 12 12 C 1.38314 * 120.34705 * 180.02562 * 11 10 8 13 13 C 1.37752 * 120.42420 * 0.02562 * 12 11 10 14 14 C 1.40759 * 120.04881 * 359.97438 * 13 12 11 15 15 C 1.41436 * 120.17375 * 179.97438 * 14 13 12 16 16 H 1.08000 * 120.00253 * 24.43142 * 15 14 13 17 17 C 1.39938 * 119.99832 * 204.42304 * 15 14 13 18 18 N 1.30825 * 120.00005 * 17.85063 * 17 15 14 19 19 Si 1.86806 * 119.99952 * 197.84460 * 17 15 14 20 20 H 1.48493 * 109.47153 * 94.69700 * 19 17 15 21 21 H 1.48504 * 109.46792 * 214.69609 * 19 17 15 22 22 H 1.48497 * 109.46905 * 334.69475 * 19 17 15 23 23 C 1.39043 * 120.02812 * 180.02562 * 10 8 7 24 24 H 1.09008 * 109.46878 * 299.99778 * 1 2 3 25 25 H 1.09000 * 109.47141 * 59.99212 * 1 2 3 26 26 H 1.09003 * 109.47668 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46527 * 240.00500 * 2 1 3 28 28 H 1.08998 * 109.46588 * 60.00535 * 3 2 1 29 29 H 1.09004 * 109.46960 * 180.02562 * 3 2 1 30 30 H 1.08994 * 109.47131 * 300.00743 * 3 2 1 31 31 H 1.09003 * 109.46893 * 60.00318 * 6 4 2 32 32 H 1.09004 * 109.47589 * 300.00421 * 6 4 2 33 33 H 1.07994 * 119.82450 * 359.97438 * 11 10 8 34 34 H 1.08007 * 119.78420 * 180.02562 * 12 11 10 35 35 H 1.08004 * 119.98087 * 179.97438 * 13 12 11 36 36 H 0.97003 * 120.00154 * 180.02562 * 18 17 15 37 37 H 1.08002 * 120.20973 * 359.69575 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2303 5 8 1.3401 -0.7704 2.2180 6 6 3.3986 -1.3463 1.2282 7 8 3.6481 -1.9618 2.5194 8 6 4.8346 -2.5779 2.6843 9 8 5.6391 -2.5998 1.7744 10 6 5.1576 -3.2269 3.9720 11 6 4.2313 -3.2014 5.0209 12 6 4.5269 -3.8063 6.2291 13 6 5.7358 -4.4401 6.4146 14 6 6.6801 -4.4761 5.3714 15 6 7.9224 -5.1256 5.5591 16 1 8.0170 -5.9069 6.2987 17 6 9.0290 -4.7560 4.7863 18 7 9.0324 -3.6104 4.1547 19 14 10.5013 -5.8985 4.6568 20 1 10.3703 -6.7387 3.4395 21 1 11.7463 -5.0936 4.5712 22 1 10.5576 -6.7712 5.8569 23 6 6.3824 -3.8624 4.1429 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5140 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8932 -0.5138 -0.8901 28 1 1.6767 1.9562 0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8899 31 1 4.1539 -0.5838 1.0376 32 1 3.4446 -2.1062 0.4481 33 1 3.2810 -2.7062 4.8864 34 1 3.8052 -3.7815 7.0323 35 1 5.9594 -4.9097 7.3611 36 1 9.7993 -3.3543 3.6187 37 1 7.0987 -3.8882 3.3351 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000730845106.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:08 Heat of formation + Delta-G solvation = -118.688707 kcal Electronic energy + Delta-G solvation = -20429.224260 eV Core-core repulsion = 17136.052006 eV Total energy + Delta-G solvation = -3293.172254 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.25719 -39.30225 -37.35726 -35.72381 -34.74964 -33.76660 -30.57157 -29.54509 -29.03047 -27.40514 -25.39527 -23.88880 -22.49455 -20.99894 -19.90026 -19.31271 -17.88553 -16.78600 -16.55960 -16.27215 -15.71894 -15.19547 -14.91713 -14.75477 -14.41679 -13.97706 -13.39905 -13.16032 -13.07091 -12.71155 -12.62997 -12.53524 -12.34216 -12.07320 -11.69034 -11.46135 -11.31027 -11.22433 -11.13663 -10.76808 -10.53926 -10.42709 -10.25716 -9.79262 -9.71068 -9.42823 -9.26328 -7.76669 -7.57053 -6.84581 -4.45236 1.79748 1.93506 2.76451 2.85252 3.05506 3.09187 3.12267 3.54909 3.88847 3.96939 4.46736 4.55773 4.65765 4.80088 5.14091 5.15741 5.24435 5.30774 5.42939 5.50445 5.52659 5.58664 5.67617 5.84669 5.93093 6.12594 6.42903 6.57885 6.84691 6.92201 6.95624 7.15223 7.29477 7.36800 7.67262 7.74242 7.89259 8.08428 8.42380 8.47171 8.75199 8.77365 10.10845 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.029562 B = 0.003732 C = 0.003395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.929877 B = 7501.015000 C = 8245.347299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.137 4.137 3 C -0.143 4.143 4 C 0.358 3.642 5 O -0.424 6.424 6 C 0.013 3.987 7 O -0.339 6.339 8 C 0.512 3.488 9 O -0.518 6.518 10 C -0.116 4.116 11 C -0.191 4.191 12 C -0.104 4.104 13 C -0.200 4.200 14 C 0.095 3.905 15 C -0.460 4.460 16 H 0.083 0.917 17 C 0.073 3.927 18 N -0.787 5.787 19 Si 0.912 3.088 20 H -0.267 1.267 21 H -0.277 1.277 22 H -0.261 1.261 23 C -0.088 4.088 24 H 0.066 0.934 25 H 0.064 0.936 26 H 0.059 0.941 27 H 0.100 0.900 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.101 0.899 32 H 0.100 0.900 33 H 0.105 0.895 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.284 0.716 37 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.570 6.218 -8.586 14.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.156 4.156 3 C -0.200 4.200 4 C 0.230 3.770 5 O -0.294 6.294 6 C -0.063 4.063 7 O -0.256 6.256 8 C 0.360 3.640 9 O -0.407 6.407 10 C -0.117 4.117 11 C -0.211 4.211 12 C -0.122 4.122 13 C -0.220 4.220 14 C 0.092 3.908 15 C -0.489 4.489 16 H 0.101 0.899 17 C -0.146 4.146 18 N -0.412 5.412 19 Si 0.736 3.264 20 H -0.192 1.192 21 H -0.202 1.202 22 H -0.185 1.185 23 C -0.108 4.108 24 H 0.085 0.915 25 H 0.083 0.917 26 H 0.078 0.922 27 H 0.118 0.882 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.119 0.881 32 H 0.118 0.882 33 H 0.123 0.877 34 H 0.115 0.885 35 H 0.117 0.883 36 H 0.096 0.904 37 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -9.566 6.356 -8.475 14.274 hybrid contribution 0.896 -0.346 -0.377 1.031 sum -8.671 6.010 -8.852 13.772 Atomic orbital electron populations 1.21712 0.92676 1.02731 1.02714 1.21611 0.98302 0.98083 0.97574 1.21754 1.01705 0.93442 1.03147 1.24559 0.86753 0.76754 0.88941 1.90429 1.56432 1.48041 1.34531 1.23320 0.97360 0.99160 0.86413 1.86713 1.38326 1.66030 1.34541 1.22000 0.78002 0.74954 0.89084 1.90761 1.48727 1.58065 1.43186 1.18801 0.97622 1.05158 0.90134 1.20628 0.99120 1.07190 0.94163 1.20521 0.96606 0.98996 0.96065 1.21203 0.96020 1.06491 0.98250 1.17541 0.92822 0.90572 0.89847 1.19582 0.93221 1.17892 1.18209 0.89898 1.25968 1.00465 0.94633 0.93512 1.69784 1.30868 1.17873 1.22669 0.86236 0.79631 0.80654 0.79873 1.19218 1.20194 1.18489 1.21647 0.93181 0.97545 0.98398 0.91500 0.91692 0.92227 0.88206 0.91847 0.91714 0.91089 0.88143 0.88173 0.87651 0.88452 0.88281 0.90449 0.84650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 8.73 37.16 0.32 -0.84 16 2 C -0.14 -1.17 3.18 -91.77 -0.29 -1.47 16 3 C -0.14 -1.06 9.18 37.16 0.34 -0.72 16 4 C 0.36 4.61 6.35 -29.04 -0.18 4.43 16 5 O -0.42 -7.06 16.24 -13.71 -0.22 -7.28 16 6 C 0.01 0.18 5.89 36.00 0.21 0.39 16 7 O -0.34 -6.68 8.99 -47.20 -0.42 -7.10 16 8 C 0.51 11.61 7.90 34.63 0.27 11.88 16 9 O -0.52 -12.37 16.12 -19.24 -0.31 -12.68 16 10 C -0.12 -2.84 5.87 -105.05 -0.62 -3.46 16 11 C -0.19 -4.38 9.62 -38.91 -0.37 -4.75 16 12 C -0.10 -2.29 10.00 -39.73 -0.40 -2.69 16 13 C -0.20 -4.76 9.78 -38.81 -0.38 -5.14 16 14 C 0.09 2.49 5.57 -106.87 -0.60 1.89 16 15 C -0.46 -11.94 9.05 -37.73 -0.34 -12.28 16 16 H 0.08 2.04 7.91 -52.49 -0.41 1.63 16 17 C 0.07 1.82 5.14 -17.34 -0.09 1.73 16 18 N -0.79 -20.52 10.95 55.55 0.61 -19.91 16 19 Si 0.91 18.51 29.60 -169.99 -5.03 13.48 16 20 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 21 H -0.28 -5.51 7.11 56.52 0.40 -5.10 16 22 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 23 C -0.09 -2.35 8.23 -38.43 -0.32 -2.66 16 24 H 0.07 0.63 7.87 -51.92 -0.41 0.22 16 25 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 32 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.11 2.25 7.59 -52.49 -0.40 1.85 16 34 H 0.10 1.84 8.06 -52.48 -0.42 1.41 16 35 H 0.10 2.17 8.06 -52.48 -0.42 1.75 16 36 H 0.28 6.78 8.30 -40.82 -0.34 6.44 16 37 H 0.14 3.82 5.74 -52.49 -0.30 3.51 16 LS Contribution 326.36 15.07 4.92 4.92 Total: -1.00 -30.42 326.36 -7.78 -38.20 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -4.89 Total: 4.05 kcal Atomic # 6 Polarization: -11.25 SS G_CDS: -2.44 Total: -13.68 kcal Atomic # 7 Polarization: -20.52 SS G_CDS: 0.61 Total: -19.91 kcal Atomic # 8 Polarization: -26.10 SS G_CDS: -0.96 Total: -27.06 kcal Atomic # 14 Polarization: 18.51 SS G_CDS: -5.03 Total: 13.48 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.42 -7.78 -38.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730845106.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.487 kcal (2) G-P(sol) polarization free energy of solvation -30.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds