Wall clock time and date at job start Mon Mar 30 2020 02:00:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.50700 * 119.99841 * 2 1 4 4 C 1.33084 * 120.00142 * 179.97438 * 2 1 3 5 5 C 1.46950 * 119.99906 * 4.46942 * 4 2 1 6 6 O 1.21534 * 119.99994 * 354.32333 * 5 4 2 7 7 O 1.34804 * 119.99908 * 174.33185 * 5 4 2 8 8 C 1.45199 * 116.99639 * 179.97438 * 7 5 4 9 9 C 1.50701 * 109.46629 * 179.97438 * 8 7 5 10 10 C 1.38299 * 119.92968 * 269.72232 * 9 8 7 11 11 C 1.38105 * 120.07147 * 179.72703 * 10 9 8 12 12 C 1.38877 * 119.92476 * 0.56969 * 11 10 9 13 13 O 1.35755 * 120.06731 * 179.68009 * 12 11 10 14 14 C 1.34834 * 116.99854 * 174.23579 * 13 12 11 15 15 H 1.07998 * 120.00048 * 5.08744 * 14 13 12 16 16 C 1.38657 * 119.99878 * 185.08511 * 14 13 12 17 17 N 1.31561 * 119.99754 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 119.99970 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47017 * 59.99929 * 18 16 14 20 20 H 1.48498 * 109.46845 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.46807 * 299.99911 * 18 16 14 22 22 C 1.38878 * 119.86711 * 359.70647 * 12 11 10 23 23 C 1.38099 * 119.92592 * 359.97438 * 22 12 11 24 24 H 1.09002 * 109.47301 * 243.99247 * 1 2 3 25 25 H 1.08993 * 109.47532 * 3.99439 * 1 2 3 26 26 H 1.09002 * 109.46936 * 123.99530 * 1 2 3 27 27 H 1.08994 * 109.47133 * 240.00194 * 3 2 1 28 28 H 1.09004 * 109.47102 * 359.97438 * 3 2 1 29 29 H 1.09006 * 109.46700 * 119.99896 * 3 2 1 30 30 H 1.07992 * 119.99927 * 184.46053 * 4 2 1 31 31 H 1.08996 * 109.47039 * 299.99477 * 8 7 5 32 32 H 1.08993 * 109.47605 * 60.00164 * 8 7 5 33 33 H 1.08000 * 119.96550 * 359.97438 * 10 9 8 34 34 H 1.07997 * 120.03811 * 180.27577 * 11 10 9 35 35 H 0.96998 * 119.99350 * 180.02562 * 17 16 14 36 36 H 1.07999 * 120.03752 * 179.97438 * 22 12 11 37 37 H 1.08011 * 119.96472 * 180.02562 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1725 -1.1525 0.0005 5 6 1.4411 -2.4233 -0.0981 6 8 0.2260 -2.4283 -0.0761 7 8 2.1180 -3.5834 -0.2127 8 6 1.3304 -4.7997 -0.3049 9 6 2.2513 -5.9863 -0.4271 10 6 2.6456 -6.4279 -1.6770 11 6 3.4939 -7.5116 -1.7922 12 6 3.9417 -8.1652 -0.6516 13 8 4.7705 -9.2348 -0.7617 14 6 5.2625 -9.7484 0.3837 15 1 4.9293 -9.3622 1.3357 16 6 6.1963 -10.7724 0.3395 17 7 6.6026 -11.2425 -0.8201 18 14 6.8775 -11.4844 1.9265 19 1 5.7655 -12.0475 2.7337 20 1 7.8524 -12.5585 1.6086 21 1 7.5565 -10.4128 2.6984 22 6 3.5394 -7.7229 0.6019 23 6 2.6962 -6.6347 0.7106 24 1 -0.3634 -0.4506 0.9236 25 1 -0.3634 1.0251 -0.0716 26 1 -0.3633 -0.5746 -0.8520 27 1 2.8871 1.3629 -0.8899 28 1 1.5521 2.1336 -0.0005 29 1 2.8871 1.3628 0.8901 30 1 3.2499 -1.1539 0.0733 31 1 0.7184 -4.9050 0.5908 32 1 0.6852 -4.7492 -1.1819 33 1 2.2929 -5.9224 -2.5638 34 1 3.8050 -7.8532 -2.7683 35 1 7.2555 -11.9591 -0.8510 36 1 3.8856 -8.2295 1.4907 37 1 2.3833 -6.2899 1.6852 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733384083.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:23 Heat of formation + Delta-G solvation = -79.302095 kcal Electronic energy + Delta-G solvation = -19840.165258 eV Core-core repulsion = 16548.700936 eV Total energy + Delta-G solvation = -3291.464322 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.32350 -39.07103 -37.28668 -36.30543 -35.28837 -32.42828 -30.65781 -30.22695 -28.60270 -28.03370 -25.98688 -24.82206 -22.07418 -22.01859 -20.56094 -18.81602 -18.06023 -17.64393 -17.06910 -16.21530 -15.95220 -14.81983 -14.66074 -14.57595 -14.38511 -14.16490 -13.69341 -13.65196 -13.21139 -12.96628 -12.76658 -12.65223 -12.49179 -12.19555 -12.08175 -11.82274 -11.71473 -11.35617 -10.98266 -10.79834 -10.68339 -10.50044 -10.37645 -10.09297 -9.42344 -9.39423 -8.89190 -8.24995 -7.31596 -6.51168 -4.09917 0.99727 1.99908 2.17160 2.92146 3.06035 3.10527 3.14359 3.17155 3.92230 4.43675 4.50249 4.65236 4.97883 5.04457 5.14254 5.15191 5.18646 5.24726 5.28445 5.38419 5.50624 5.55925 5.64487 5.67684 5.79081 5.85315 6.14419 6.15289 6.20301 6.35100 6.60807 6.63969 6.82768 6.98462 7.16770 7.28990 7.36927 7.73455 7.90796 7.93630 8.93984 9.62123 10.66300 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.035212 B = 0.002840 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.002090 B = 9856.339410 C =10107.872461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.029 4.029 3 C -0.127 4.127 4 C -0.211 4.211 5 C 0.489 3.511 6 O -0.519 6.519 7 O -0.348 6.348 8 C 0.131 3.869 9 C -0.204 4.204 10 C -0.049 4.049 11 C -0.196 4.196 12 C 0.163 3.837 13 O -0.172 6.172 14 C -0.394 4.394 15 H 0.093 0.907 16 C 0.040 3.960 17 N -0.860 5.860 18 Si 0.943 3.057 19 H -0.269 1.269 20 H -0.277 1.277 21 H -0.269 1.269 22 C -0.238 4.238 23 C -0.045 4.045 24 H 0.082 0.918 25 H 0.056 0.944 26 H 0.087 0.913 27 H 0.080 0.920 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.138 0.862 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.113 0.887 34 H 0.120 0.880 35 H 0.272 0.728 36 H 0.130 0.870 37 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.093 19.146 2.255 20.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.030 4.030 3 C -0.184 4.184 4 C -0.230 4.230 5 C 0.336 3.664 6 O -0.412 6.412 7 O -0.265 6.265 8 C 0.058 3.942 9 C -0.205 4.205 10 C -0.067 4.067 11 C -0.215 4.215 12 C 0.108 3.892 13 O -0.075 6.075 14 C -0.470 4.470 15 H 0.111 0.889 16 C -0.165 4.165 17 N -0.494 5.494 18 Si 0.767 3.233 19 H -0.194 1.194 20 H -0.202 1.202 21 H -0.194 1.194 22 C -0.257 4.257 23 C -0.063 4.063 24 H 0.101 0.899 25 H 0.075 0.925 26 H 0.105 0.895 27 H 0.098 0.902 28 H 0.090 0.910 29 H 0.097 0.903 30 H 0.156 0.844 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.131 0.869 34 H 0.138 0.862 35 H 0.082 0.918 36 H 0.147 0.853 37 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -8.181 18.756 1.970 20.557 hybrid contribution 0.343 -0.504 0.853 1.048 sum -7.838 18.252 2.823 20.063 Atomic orbital electron populations 1.21184 0.90702 1.01600 1.04434 1.22687 0.96979 0.94478 0.88813 1.21039 1.00406 0.93605 1.03302 1.21755 1.00895 0.89098 1.11287 1.21487 0.86208 0.85373 0.73284 1.90808 1.15130 1.88094 1.47141 1.86750 1.41787 1.15148 1.82805 1.21664 0.91651 0.79123 1.01759 1.18885 1.08320 0.99260 0.93989 1.20511 0.95230 0.95005 0.95983 1.20196 1.04699 0.99444 0.97160 1.19438 0.89712 0.86888 0.93178 1.83979 1.52821 1.36655 1.34014 1.21323 1.23426 1.18100 0.84136 0.88941 1.25323 0.95881 0.96261 0.98990 1.70031 1.29413 1.25590 1.24353 0.85756 0.78919 0.78790 0.79850 1.19423 1.20212 1.19406 1.21138 1.05131 1.01469 0.97949 1.20621 0.94756 0.94170 0.96801 0.89943 0.92532 0.89499 0.90177 0.90975 0.90253 0.84442 0.91326 0.91301 0.86903 0.86207 0.91828 0.85277 0.87338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.12 8.36 36.01 0.30 -0.82 16 2 C -0.03 -0.25 6.11 -101.14 -0.62 -0.87 16 3 C -0.13 -0.72 10.07 36.01 0.36 -0.35 16 4 C -0.21 -2.30 9.79 -37.85 -0.37 -2.67 16 5 C 0.49 6.92 7.87 34.26 0.27 7.19 16 6 O -0.52 -7.98 12.89 -19.29 -0.25 -8.23 16 7 O -0.35 -5.51 10.22 -40.78 -0.42 -5.92 16 8 C 0.13 2.03 5.60 36.01 0.20 2.23 16 9 C -0.20 -3.64 5.52 -104.58 -0.58 -4.22 16 10 C -0.05 -0.89 9.69 -39.61 -0.38 -1.28 16 11 C -0.20 -4.13 9.99 -39.39 -0.39 -4.53 16 12 C 0.16 3.91 6.65 -39.11 -0.26 3.65 16 13 O -0.17 -4.87 9.76 0.02 0.00 -4.87 16 14 C -0.39 -10.88 9.49 30.89 0.29 -10.59 16 15 H 0.09 2.35 5.21 -52.49 -0.27 2.08 16 16 C 0.04 1.10 5.49 -17.51 -0.10 1.00 16 17 N -0.86 -24.92 13.67 55.48 0.76 -24.16 16 18 Si 0.94 20.24 29.55 -169.99 -5.02 15.21 16 19 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 20 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 21 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 22 C -0.24 -5.15 9.17 -39.40 -0.36 -5.51 16 23 C -0.05 -0.84 9.69 -39.61 -0.38 -1.23 16 24 H 0.08 0.84 7.58 -51.93 -0.39 0.44 16 25 H 0.06 0.38 7.70 -51.93 -0.40 -0.02 16 26 H 0.09 0.93 6.84 -51.93 -0.36 0.58 16 27 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.32 7.70 -51.93 -0.40 -0.08 16 29 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.14 1.29 8.06 -52.49 -0.42 0.87 16 31 H 0.07 1.01 8.08 -51.93 -0.42 0.59 16 32 H 0.07 1.00 8.08 -51.93 -0.42 0.58 16 33 H 0.11 1.74 8.06 -52.49 -0.42 1.31 16 34 H 0.12 2.42 8.06 -52.49 -0.42 1.99 16 35 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 36 H 0.13 2.77 5.64 -52.49 -0.30 2.47 16 37 H 0.11 1.75 8.06 -52.48 -0.42 1.33 16 LS Contribution 324.56 15.07 4.89 4.89 Total: -1.00 -31.21 324.56 -6.68 -37.90 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -4.63 Total: 3.17 kcal Atomic # 6 Polarization: -15.97 SS G_CDS: -2.02 Total: -17.99 kcal Atomic # 7 Polarization: -24.92 SS G_CDS: 0.76 Total: -24.16 kcal Atomic # 8 Polarization: -18.35 SS G_CDS: -0.67 Total: -19.02 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -31.21 -6.68 -37.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733384083.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.405 kcal (2) G-P(sol) polarization free energy of solvation -31.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds