Wall clock time and date at job start Mon Mar 30 2020 02:00:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.50700 * 119.99841 * 2 1 4 4 C 1.33084 * 120.00142 * 179.97438 * 2 1 3 5 5 C 1.46950 * 119.99906 * 4.46942 * 4 2 1 6 6 O 1.21534 * 119.99994 * 354.32333 * 5 4 2 7 7 O 1.34804 * 119.99908 * 174.33185 * 5 4 2 8 8 C 1.45199 * 116.99639 * 179.97438 * 7 5 4 9 9 C 1.50701 * 109.46629 * 179.97438 * 8 7 5 10 10 C 1.38299 * 119.92968 * 269.72232 * 9 8 7 11 11 C 1.38105 * 120.07147 * 179.72703 * 10 9 8 12 12 C 1.38877 * 119.92476 * 0.56969 * 11 10 9 13 13 O 1.35755 * 120.06731 * 179.68009 * 12 11 10 14 14 C 1.34834 * 116.99854 * 174.23579 * 13 12 11 15 15 H 1.07998 * 120.00048 * 5.08744 * 14 13 12 16 16 C 1.38657 * 119.99878 * 185.08511 * 14 13 12 17 17 N 1.31561 * 119.99754 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 119.99970 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47017 * 59.99929 * 18 16 14 20 20 H 1.48498 * 109.46845 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.46807 * 299.99911 * 18 16 14 22 22 C 1.38878 * 119.86711 * 359.70647 * 12 11 10 23 23 C 1.38099 * 119.92592 * 359.97438 * 22 12 11 24 24 H 1.09002 * 109.47301 * 243.99247 * 1 2 3 25 25 H 1.08993 * 109.47532 * 3.99439 * 1 2 3 26 26 H 1.09002 * 109.46936 * 123.99530 * 1 2 3 27 27 H 1.08994 * 109.47133 * 240.00194 * 3 2 1 28 28 H 1.09004 * 109.47102 * 359.97438 * 3 2 1 29 29 H 1.09006 * 109.46700 * 119.99896 * 3 2 1 30 30 H 1.07992 * 119.99927 * 184.46053 * 4 2 1 31 31 H 1.08996 * 109.47039 * 299.99477 * 8 7 5 32 32 H 1.08993 * 109.47605 * 60.00164 * 8 7 5 33 33 H 1.08000 * 119.96550 * 359.97438 * 10 9 8 34 34 H 1.07997 * 120.03811 * 180.27577 * 11 10 9 35 35 H 0.96998 * 119.99350 * 180.02562 * 17 16 14 36 36 H 1.07999 * 120.03752 * 179.97438 * 22 12 11 37 37 H 1.08011 * 119.96472 * 180.02562 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1725 -1.1525 0.0005 5 6 1.4411 -2.4233 -0.0981 6 8 0.2260 -2.4283 -0.0761 7 8 2.1180 -3.5834 -0.2127 8 6 1.3304 -4.7997 -0.3049 9 6 2.2513 -5.9863 -0.4271 10 6 2.6456 -6.4279 -1.6770 11 6 3.4939 -7.5116 -1.7922 12 6 3.9417 -8.1652 -0.6516 13 8 4.7705 -9.2348 -0.7617 14 6 5.2625 -9.7484 0.3837 15 1 4.9293 -9.3622 1.3357 16 6 6.1963 -10.7724 0.3395 17 7 6.6026 -11.2425 -0.8201 18 14 6.8775 -11.4844 1.9265 19 1 5.7655 -12.0475 2.7337 20 1 7.8524 -12.5585 1.6086 21 1 7.5565 -10.4128 2.6984 22 6 3.5394 -7.7229 0.6019 23 6 2.6962 -6.6347 0.7106 24 1 -0.3634 -0.4506 0.9236 25 1 -0.3634 1.0251 -0.0716 26 1 -0.3633 -0.5746 -0.8520 27 1 2.8871 1.3629 -0.8899 28 1 1.5521 2.1336 -0.0005 29 1 2.8871 1.3628 0.8901 30 1 3.2499 -1.1539 0.0733 31 1 0.7184 -4.9050 0.5908 32 1 0.6852 -4.7492 -1.1819 33 1 2.2929 -5.9224 -2.5638 34 1 3.8050 -7.8532 -2.7683 35 1 7.2555 -11.9591 -0.8510 36 1 3.8856 -8.2295 1.4907 37 1 2.3833 -6.2899 1.6852 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733384083.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:23 Heat of formation + Delta-G solvation = -96.571971 kcal Electronic energy + Delta-G solvation = -19840.914136 eV Core-core repulsion = 16548.700936 eV Total energy + Delta-G solvation = -3292.213200 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.46109 -40.77441 -38.70198 -37.64893 -36.19988 -34.37521 -32.19567 -31.85018 -29.45725 -28.66191 -27.73314 -26.41631 -23.70557 -23.12634 -22.12211 -19.92769 -19.67917 -18.91439 -18.67998 -17.40136 -17.12708 -16.39043 -16.28388 -15.91633 -15.58346 -15.30304 -15.18142 -14.91280 -14.54543 -14.31639 -14.07351 -13.76547 -13.52029 -13.38751 -13.20675 -13.04438 -12.74745 -12.60064 -12.45767 -12.44452 -12.21892 -12.14939 -11.63540 -11.22144 -11.12798 -10.81172 -10.17097 -9.85942 -9.07575 -8.49521 -6.18233 0.15580 0.43431 0.53677 1.35506 1.45272 1.51788 1.90821 1.98964 2.16940 2.82111 3.13567 3.44389 3.73612 3.85498 3.90205 3.90884 4.11665 4.19101 4.28966 4.44372 4.50428 4.53314 4.68562 4.72249 4.82302 4.87929 4.97211 5.05929 5.10754 5.14336 5.20770 5.37958 5.45539 5.49409 5.63646 5.64532 5.67595 5.99104 6.10127 6.82082 6.94672 7.72323 8.72989 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.035212 B = 0.002840 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.002090 B = 9856.339410 C =10107.872461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.005 4.005 3 C -0.127 4.127 4 C -0.240 4.240 5 C 0.485 3.515 6 O -0.538 6.538 7 O -0.361 6.361 8 C 0.132 3.868 9 C -0.183 4.183 10 C -0.042 4.042 11 C -0.205 4.205 12 C 0.125 3.875 13 O -0.225 6.225 14 C -0.417 4.417 15 H 0.104 0.896 16 C -0.021 4.021 17 N -0.918 5.918 18 Si 1.019 2.981 19 H -0.257 1.257 20 H -0.271 1.271 21 H -0.257 1.257 22 C -0.244 4.244 23 C -0.044 4.044 24 H 0.071 0.929 25 H 0.084 0.916 26 H 0.069 0.931 27 H 0.091 0.909 28 H 0.089 0.911 29 H 0.092 0.908 30 H 0.150 0.850 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.149 0.851 34 H 0.120 0.880 35 H 0.274 0.726 36 H 0.125 0.875 37 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.220 22.292 3.529 24.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.006 4.006 3 C -0.183 4.183 4 C -0.258 4.258 5 C 0.334 3.666 6 O -0.432 6.432 7 O -0.279 6.279 8 C 0.059 3.941 9 C -0.183 4.183 10 C -0.060 4.060 11 C -0.224 4.224 12 C 0.074 3.926 13 O -0.131 6.131 14 C -0.493 4.493 15 H 0.121 0.879 16 C -0.219 4.219 17 N -0.555 5.555 18 Si 0.838 3.162 19 H -0.181 1.181 20 H -0.196 1.196 21 H -0.181 1.181 22 C -0.264 4.264 23 C -0.062 4.062 24 H 0.089 0.911 25 H 0.103 0.897 26 H 0.088 0.912 27 H 0.110 0.890 28 H 0.108 0.892 29 H 0.110 0.890 30 H 0.168 0.832 31 H 0.098 0.902 32 H 0.101 0.899 33 H 0.166 0.834 34 H 0.138 0.862 35 H 0.083 0.917 36 H 0.143 0.857 37 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -9.349 21.959 3.246 24.086 hybrid contribution 0.403 -1.085 0.388 1.221 sum -8.946 20.874 3.634 22.999 Atomic orbital electron populations 1.21206 0.91059 1.02973 1.03026 1.23077 0.96965 0.95333 0.85204 1.21155 1.00814 0.91988 1.04343 1.21821 1.01503 0.88070 1.14438 1.22066 0.86254 0.85584 0.72649 1.90804 1.15864 1.88174 1.48323 1.86714 1.42180 1.15620 1.83355 1.21607 0.90954 0.78405 1.03137 1.19279 1.06342 0.99221 0.93492 1.20897 0.93736 0.93657 0.97739 1.20448 1.05256 1.00135 0.96574 1.19985 0.90226 0.87198 0.95173 1.83952 1.55371 1.39141 1.34673 1.21827 1.24071 1.18729 0.84692 0.87885 1.26618 0.95895 0.96379 1.02984 1.70176 1.31150 1.27099 1.27122 0.84640 0.78402 0.78128 0.75014 1.18081 1.19593 1.18133 1.21246 1.05779 1.02368 0.96962 1.20958 0.93582 0.92892 0.98792 0.91073 0.89727 0.91211 0.89040 0.89243 0.88989 0.83197 0.90156 0.89911 0.83353 0.86165 0.91697 0.85708 0.84179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.00 8.36 71.24 0.60 -1.41 16 2 C 0.00 -0.07 6.11 -17.60 -0.11 -0.18 16 3 C -0.13 -0.93 10.07 71.24 0.72 -0.21 16 4 C -0.24 -4.65 9.79 23.40 0.23 -4.42 16 5 C 0.49 12.79 7.87 70.10 0.55 13.34 16 6 O -0.54 -15.63 12.89 19.72 0.25 -15.38 16 7 O -0.36 -10.56 10.22 -57.15 -0.58 -11.15 16 8 C 0.13 3.70 5.60 71.24 0.40 4.10 16 9 C -0.18 -6.09 5.52 -19.84 -0.11 -6.20 16 10 C -0.04 -1.46 9.69 22.25 0.22 -1.25 16 11 C -0.20 -8.75 9.99 22.39 0.22 -8.52 16 12 C 0.13 6.25 6.65 22.58 0.15 6.40 16 13 O -0.23 -13.51 9.76 -22.83 -0.22 -13.73 16 14 C -0.42 -24.14 9.49 67.92 0.64 -23.50 16 15 H 0.10 5.44 5.21 -2.91 -0.02 5.42 16 16 C -0.02 -1.17 5.49 84.83 0.47 -0.70 16 17 N -0.92 -55.98 13.67 21.61 0.30 -55.68 16 18 Si 1.02 42.39 29.55 68.60 2.03 44.42 16 19 H -0.26 -10.00 7.11 99.48 0.71 -9.30 16 20 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 21 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 22 C -0.24 -10.68 9.17 22.39 0.21 -10.47 16 23 C -0.04 -1.58 9.69 22.25 0.22 -1.36 16 24 H 0.07 1.32 7.58 -2.39 -0.02 1.30 16 25 H 0.08 0.84 7.70 -2.39 -0.02 0.83 16 26 H 0.07 1.39 6.84 -2.39 -0.02 1.37 16 27 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.09 0.39 7.70 -2.39 -0.02 0.37 16 29 H 0.09 0.53 8.14 -2.38 -0.02 0.51 16 30 H 0.15 2.46 8.06 -2.91 -0.02 2.44 16 31 H 0.08 2.10 8.08 -2.39 -0.02 2.08 16 32 H 0.08 2.13 8.08 -2.39 -0.02 2.11 16 33 H 0.15 4.08 8.06 -2.91 -0.02 4.06 16 34 H 0.12 5.00 8.06 -2.91 -0.02 4.98 16 35 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 36 H 0.13 5.46 5.64 -2.91 -0.02 5.45 16 37 H 0.14 4.10 8.06 -2.90 -0.02 4.07 16 Total: -1.00 -71.87 324.56 7.24 -64.62 By element: Atomic # 1 Polarization: 20.20 SS G_CDS: 1.08 Total: 21.28 kcal Atomic # 6 Polarization: -38.78 SS G_CDS: 4.40 Total: -34.38 kcal Atomic # 7 Polarization: -55.98 SS G_CDS: 0.30 Total: -55.68 kcal Atomic # 8 Polarization: -39.70 SS G_CDS: -0.55 Total: -40.25 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.42 kcal Total: -71.87 7.24 -64.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733384083.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.949 kcal (2) G-P(sol) polarization free energy of solvation -71.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds