Wall clock time and date at job start Mon Mar 30 2020 02:11:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 115.54936 * 2 1 4 4 C 1.53002 * 117.49897 * 214.33153 * 2 1 3 5 5 C 1.52994 * 117.50194 * 145.70716 * 2 1 3 6 6 H 1.09001 * 117.50509 * 214.98230 * 5 2 1 7 7 C 1.50711 * 117.49721 * 359.97438 * 5 2 1 8 8 O 1.20827 * 119.99732 * 0.02562 * 7 5 2 9 9 O 1.34219 * 119.99991 * 180.02562 * 7 5 2 10 10 C 1.45197 * 117.00133 * 180.02562 * 9 7 5 11 11 C 1.50703 * 109.47575 * 180.02562 * 10 9 7 12 12 C 1.38300 * 119.92568 * 269.72745 * 11 10 9 13 13 C 1.38102 * 120.06623 * 179.72530 * 12 11 10 14 14 C 1.38884 * 119.92962 * 0.51889 * 13 12 11 15 15 O 1.35748 * 120.06700 * 179.72813 * 14 13 12 16 16 C 1.34830 * 116.99728 * 174.48677 * 15 14 13 17 17 H 1.07997 * 120.00094 * 5.06383 * 16 15 14 18 18 C 1.38659 * 120.00142 * 185.05615 * 16 15 14 19 19 N 1.31554 * 119.99746 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00089 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47012 * 60.00376 * 20 18 16 22 22 H 1.48498 * 109.46735 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47139 * 299.99854 * 20 18 16 24 24 C 1.38878 * 119.86065 * 359.75191 * 14 13 12 25 25 C 1.38103 * 119.93325 * 359.97438 * 24 14 13 26 26 H 1.08994 * 109.47163 * 154.28283 * 1 2 3 27 27 H 1.09003 * 109.46931 * 34.27693 * 1 2 3 28 28 H 1.09008 * 109.46785 * 274.28110 * 1 2 3 29 29 H 1.08993 * 117.49832 * 359.97438 * 4 2 1 30 30 H 1.08995 * 117.50006 * 144.99739 * 4 2 1 31 31 H 1.09006 * 109.46862 * 299.99909 * 10 9 7 32 32 H 1.08998 * 109.47549 * 59.99651 * 10 9 7 33 33 H 1.08002 * 119.96861 * 359.96952 * 12 11 10 34 34 H 1.08005 * 120.03858 * 180.27311 * 13 12 11 35 35 H 0.97002 * 120.00061 * 179.97438 * 19 18 16 36 36 H 1.07998 * 120.03019 * 180.02562 * 24 14 13 37 37 H 1.07997 * 119.96440 * 180.02562 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2365 -1.1207 -0.7654 5 6 2.2365 -1.1212 0.7646 6 1 3.1716 -0.8755 1.2680 7 6 1.3720 -2.1408 1.4607 8 8 0.1684 -2.0537 1.4013 9 8 1.9393 -3.1454 2.1465 10 6 1.0453 -4.0907 2.7911 11 6 1.8556 -5.1398 3.5081 12 6 2.2226 -6.2985 2.8482 13 6 2.9700 -7.2592 3.5007 14 6 3.3438 -7.0656 4.8242 15 8 4.0737 -8.0106 5.4699 16 6 4.4997 -7.7110 6.7135 17 1 4.1889 -6.7896 7.1835 18 6 5.3369 -8.5858 7.3892 19 7 5.7158 -9.7079 6.8166 20 14 5.9266 -8.1710 9.1124 21 1 4.7561 -8.0258 10.0146 22 1 6.8042 -9.2603 9.6108 23 1 6.6889 -6.8969 9.0815 24 6 2.9688 -5.9035 5.4857 25 6 2.2263 -4.9440 4.8260 26 1 -0.3633 -0.9258 -0.4459 27 1 -0.3633 0.8492 -0.5788 28 1 -0.3633 0.0767 1.0249 29 1 1.6113 -1.8582 -1.2686 30 1 3.1713 -0.8747 -1.2689 31 1 0.4164 -3.5644 3.5092 32 1 0.4170 -4.5677 2.0389 33 1 1.9279 -6.4504 1.8204 34 1 3.2601 -8.1619 2.9835 35 1 6.3018 -10.3198 7.2891 36 1 3.2584 -5.7500 6.5148 37 1 1.9348 -4.0399 5.3399 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733392388.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:38 Heat of formation + Delta-G solvation = -65.617407 kcal Electronic energy + Delta-G solvation = -20047.677370 eV Core-core repulsion = 16756.806460 eV Total energy + Delta-G solvation = -3290.870909 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.66313 -39.12975 -37.87407 -36.63840 -35.76085 -32.44644 -30.64934 -30.24527 -28.90232 -26.38266 -25.30743 -24.06611 -22.06473 -21.52357 -20.59587 -20.09983 -18.08240 -17.79778 -17.11431 -16.43270 -16.02080 -15.51566 -14.65740 -14.60100 -14.39377 -13.72599 -13.71522 -13.41489 -13.33694 -12.88803 -12.78289 -12.60717 -12.45117 -12.21799 -11.79367 -11.73541 -11.37981 -11.00803 -10.82862 -10.71613 -10.59636 -10.52568 -10.47399 -10.39423 -10.04173 -9.42068 -8.90716 -8.27140 -7.33526 -6.52681 -4.11447 1.94278 2.09109 2.15230 2.90841 3.09520 3.11914 3.13511 3.47035 3.90930 4.30057 4.42826 4.50585 4.67327 4.94245 5.03411 5.05552 5.15811 5.20825 5.24995 5.38058 5.51151 5.57833 5.64733 5.67148 5.72442 5.76686 5.82931 6.12571 6.19618 6.32922 6.57933 6.60323 6.80618 6.96510 7.14671 7.26702 7.35122 7.71335 7.84981 7.92004 8.92411 9.60318 10.64730 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.038196 B = 0.002924 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.879328 B = 9574.455232 C = 9755.155164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.120 4.120 3 H 0.116 0.884 4 C -0.147 4.147 5 C -0.170 4.170 6 H 0.134 0.866 7 C 0.488 3.512 8 O -0.511 6.511 9 O -0.347 6.347 10 C 0.130 3.870 11 C -0.204 4.204 12 C -0.049 4.049 13 C -0.196 4.196 14 C 0.163 3.837 15 O -0.172 6.172 16 C -0.394 4.394 17 H 0.093 0.907 18 C 0.041 3.959 19 N -0.859 5.859 20 Si 0.943 3.057 21 H -0.269 1.269 22 H -0.277 1.277 23 H -0.269 1.269 24 C -0.238 4.238 25 C -0.045 4.045 26 H 0.064 0.936 27 H 0.052 0.948 28 H 0.068 0.932 29 H 0.101 0.899 30 H 0.109 0.891 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.113 0.887 34 H 0.120 0.880 35 H 0.272 0.728 36 H 0.130 0.870 37 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.335 15.529 -10.476 19.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.138 4.138 3 H 0.134 0.866 4 C -0.184 4.184 5 C -0.189 4.189 6 H 0.152 0.848 7 C 0.331 3.669 8 O -0.401 6.401 9 O -0.264 6.264 10 C 0.058 3.942 11 C -0.206 4.206 12 C -0.067 4.067 13 C -0.215 4.215 14 C 0.108 3.892 15 O -0.074 6.074 16 C -0.470 4.470 17 H 0.111 0.889 18 C -0.164 4.164 19 N -0.493 5.493 20 Si 0.767 3.233 21 H -0.194 1.194 22 H -0.202 1.202 23 H -0.194 1.194 24 C -0.257 4.257 25 C -0.063 4.063 26 H 0.083 0.917 27 H 0.071 0.929 28 H 0.087 0.913 29 H 0.120 0.880 30 H 0.127 0.873 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.131 0.869 34 H 0.138 0.862 35 H 0.082 0.918 36 H 0.147 0.853 37 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -6.469 15.048 -10.453 19.431 hybrid contribution 0.332 0.128 1.042 1.101 sum -6.137 15.175 -9.411 18.882 Atomic orbital electron populations 1.21423 0.91418 1.01673 1.02746 1.22504 0.96689 0.93761 1.00870 0.86597 1.23154 1.03349 1.01564 0.90374 1.21855 1.02149 0.99157 0.95739 0.84776 1.22559 0.87238 0.80734 0.76334 1.90643 1.16003 1.74214 1.59222 1.86646 1.42387 1.36146 1.61194 1.21701 0.90094 0.87309 0.95135 1.18870 1.10369 0.96217 0.95095 1.20507 0.95438 0.92717 0.98033 1.20199 1.06346 1.01761 0.93201 1.19437 0.90188 0.88149 0.91410 1.83977 1.58595 1.35933 1.28895 1.21326 1.29411 1.07405 0.88879 0.88925 1.25325 0.95867 0.95079 1.00162 1.70027 1.32213 1.09227 1.37869 0.85756 0.78983 0.78456 0.80121 1.19410 1.20197 1.19393 1.21140 1.06568 0.96273 1.01728 1.20618 0.95016 0.97244 0.93442 0.91726 0.92918 0.91300 0.88025 0.87268 0.91260 0.91249 0.86911 0.86192 0.91801 0.85262 0.87338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.09 8.43 37.16 0.31 -0.77 16 2 C -0.12 -1.00 6.41 -90.62 -0.58 -1.58 16 3 H 0.12 0.73 8.14 -51.93 -0.42 0.30 16 4 C -0.15 -1.19 9.88 -26.73 -0.26 -1.45 16 5 C -0.17 -1.71 6.30 -91.77 -0.58 -2.29 16 6 H 0.13 1.18 8.14 -51.93 -0.42 0.75 16 7 C 0.49 6.62 7.72 36.01 0.28 6.90 16 8 O -0.51 -7.67 12.86 -18.75 -0.24 -7.92 16 9 O -0.35 -5.32 10.20 -39.23 -0.40 -5.72 16 10 C 0.13 1.97 5.59 36.01 0.20 2.18 16 11 C -0.20 -3.60 5.52 -104.58 -0.58 -4.18 16 12 C -0.05 -0.87 9.69 -39.61 -0.38 -1.26 16 13 C -0.20 -4.10 9.99 -39.39 -0.39 -4.49 16 14 C 0.16 3.89 6.65 -39.11 -0.26 3.63 16 15 O -0.17 -4.82 9.76 0.06 0.00 -4.82 16 16 C -0.39 -10.84 9.49 30.89 0.29 -10.55 16 17 H 0.09 2.34 5.20 -52.49 -0.27 2.07 16 18 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 19 N -0.86 -24.81 13.67 55.48 0.76 -24.05 16 20 Si 0.94 20.14 29.55 -169.99 -5.02 15.11 16 21 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 22 H -0.28 -5.79 7.11 56.52 0.40 -5.38 16 23 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 24 C -0.24 -5.11 9.17 -39.39 -0.36 -5.47 16 25 C -0.04 -0.83 9.69 -39.61 -0.38 -1.21 16 26 H 0.06 0.69 7.02 -51.93 -0.36 0.33 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.07 0.75 7.26 -51.92 -0.38 0.37 16 29 H 0.10 0.87 8.05 -51.93 -0.42 0.45 16 30 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 1.00 8.08 -51.93 -0.42 0.58 16 32 H 0.07 0.98 8.08 -51.93 -0.42 0.57 16 33 H 0.11 1.71 8.06 -52.49 -0.42 1.28 16 34 H 0.12 2.40 8.06 -52.48 -0.42 1.97 16 35 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 36 H 0.13 2.75 5.64 -52.49 -0.30 2.46 16 37 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 LS Contribution 321.77 15.07 4.85 4.85 Total: -1.00 -30.80 321.77 -7.51 -38.31 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -4.66 Total: 3.78 kcal Atomic # 6 Polarization: -16.76 SS G_CDS: -2.79 Total: -19.55 kcal Atomic # 7 Polarization: -24.81 SS G_CDS: 0.76 Total: -24.05 kcal Atomic # 8 Polarization: -17.82 SS G_CDS: -0.64 Total: -18.46 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.11 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.80 -7.51 -38.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733392388.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.306 kcal (2) G-P(sol) polarization free energy of solvation -30.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds