Wall clock time and date at job start Mon Mar 30 2020 02:11:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 115.54936 * 2 1 4 4 C 1.53002 * 117.49897 * 214.33153 * 2 1 3 5 5 C 1.52994 * 117.50194 * 145.70716 * 2 1 3 6 6 H 1.09001 * 117.50509 * 214.98230 * 5 2 1 7 7 C 1.50711 * 117.49721 * 359.97438 * 5 2 1 8 8 O 1.20827 * 119.99732 * 0.02562 * 7 5 2 9 9 O 1.34219 * 119.99991 * 180.02562 * 7 5 2 10 10 C 1.45197 * 117.00133 * 180.02562 * 9 7 5 11 11 C 1.50703 * 109.47575 * 180.02562 * 10 9 7 12 12 C 1.38300 * 119.92568 * 269.72745 * 11 10 9 13 13 C 1.38102 * 120.06623 * 179.72530 * 12 11 10 14 14 C 1.38884 * 119.92962 * 0.51889 * 13 12 11 15 15 O 1.35748 * 120.06700 * 179.72813 * 14 13 12 16 16 C 1.34830 * 116.99728 * 174.48677 * 15 14 13 17 17 H 1.07997 * 120.00094 * 5.06383 * 16 15 14 18 18 C 1.38659 * 120.00142 * 185.05615 * 16 15 14 19 19 N 1.31554 * 119.99746 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00089 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47012 * 60.00376 * 20 18 16 22 22 H 1.48498 * 109.46735 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47139 * 299.99854 * 20 18 16 24 24 C 1.38878 * 119.86065 * 359.75191 * 14 13 12 25 25 C 1.38103 * 119.93325 * 359.97438 * 24 14 13 26 26 H 1.08994 * 109.47163 * 154.28283 * 1 2 3 27 27 H 1.09003 * 109.46931 * 34.27693 * 1 2 3 28 28 H 1.09008 * 109.46785 * 274.28110 * 1 2 3 29 29 H 1.08993 * 117.49832 * 359.97438 * 4 2 1 30 30 H 1.08995 * 117.50006 * 144.99739 * 4 2 1 31 31 H 1.09006 * 109.46862 * 299.99909 * 10 9 7 32 32 H 1.08998 * 109.47549 * 59.99651 * 10 9 7 33 33 H 1.08002 * 119.96861 * 359.96952 * 12 11 10 34 34 H 1.08005 * 120.03858 * 180.27311 * 13 12 11 35 35 H 0.97002 * 120.00061 * 179.97438 * 19 18 16 36 36 H 1.07998 * 120.03019 * 180.02562 * 24 14 13 37 37 H 1.07997 * 119.96440 * 180.02562 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2365 -1.1207 -0.7654 5 6 2.2365 -1.1212 0.7646 6 1 3.1716 -0.8755 1.2680 7 6 1.3720 -2.1408 1.4607 8 8 0.1684 -2.0537 1.4013 9 8 1.9393 -3.1454 2.1465 10 6 1.0453 -4.0907 2.7911 11 6 1.8556 -5.1398 3.5081 12 6 2.2226 -6.2985 2.8482 13 6 2.9700 -7.2592 3.5007 14 6 3.3438 -7.0656 4.8242 15 8 4.0737 -8.0106 5.4699 16 6 4.4997 -7.7110 6.7135 17 1 4.1889 -6.7896 7.1835 18 6 5.3369 -8.5858 7.3892 19 7 5.7158 -9.7079 6.8166 20 14 5.9266 -8.1710 9.1124 21 1 4.7561 -8.0258 10.0146 22 1 6.8042 -9.2603 9.6108 23 1 6.6889 -6.8969 9.0815 24 6 2.9688 -5.9035 5.4857 25 6 2.2263 -4.9440 4.8260 26 1 -0.3633 -0.9258 -0.4459 27 1 -0.3633 0.8492 -0.5788 28 1 -0.3633 0.0767 1.0249 29 1 1.6113 -1.8582 -1.2686 30 1 3.1713 -0.8747 -1.2689 31 1 0.4164 -3.5644 3.5092 32 1 0.4170 -4.5677 2.0389 33 1 1.9279 -6.4504 1.8204 34 1 3.2601 -8.1619 2.9835 35 1 6.3018 -10.3198 7.2891 36 1 3.2584 -5.7500 6.5148 37 1 1.9348 -4.0399 5.3399 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733392388.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:37 Heat of formation + Delta-G solvation = -82.220823 kcal Electronic energy + Delta-G solvation = -20048.397348 eV Core-core repulsion = 16756.806460 eV Total energy + Delta-G solvation = -3291.590888 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.72156 -40.81704 -38.98427 -38.09321 -36.88458 -34.38079 -32.18890 -31.85263 -29.67789 -27.93224 -26.91211 -25.18755 -23.71083 -22.36060 -22.07322 -21.03045 -19.91281 -18.94944 -18.75977 -17.54020 -17.22888 -16.50866 -16.38666 -16.09560 -15.72884 -15.57874 -15.15013 -14.66366 -14.38337 -14.35856 -13.94153 -13.81071 -13.51655 -13.50393 -13.23939 -13.00085 -12.60329 -12.46035 -12.40775 -12.24628 -12.15376 -11.67656 -11.34972 -11.24046 -11.22369 -10.92980 -10.80534 -9.86406 -9.07821 -8.49865 -6.18583 0.41664 0.53258 1.09537 1.35412 1.44840 1.51627 1.80400 2.16605 2.74942 2.81078 3.12382 3.43909 3.59047 3.72454 3.83551 3.89751 3.91145 4.09777 4.14074 4.27960 4.41481 4.44913 4.52629 4.71749 4.78544 4.87166 4.95970 4.96725 5.01862 5.10397 5.15864 5.20234 5.36730 5.47340 5.60275 5.63811 5.66750 5.98745 6.09684 6.77801 6.94359 7.71960 8.72632 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.038196 B = 0.002924 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.879328 B = 9574.455232 C = 9755.155164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.113 4.113 3 H 0.144 0.856 4 C -0.136 4.136 5 C -0.188 4.188 6 H 0.149 0.851 7 C 0.484 3.516 8 O -0.530 6.530 9 O -0.359 6.359 10 C 0.131 3.869 11 C -0.183 4.183 12 C -0.042 4.042 13 C -0.205 4.205 14 C 0.126 3.874 15 O -0.225 6.225 16 C -0.418 4.418 17 H 0.104 0.896 18 C -0.020 4.020 19 N -0.918 5.918 20 Si 1.019 2.981 21 H -0.257 1.257 22 H -0.272 1.272 23 H -0.257 1.257 24 C -0.245 4.245 25 C -0.044 4.044 26 H 0.046 0.954 27 H 0.072 0.928 28 H 0.050 0.950 29 H 0.094 0.906 30 H 0.135 0.865 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.149 0.851 34 H 0.120 0.880 35 H 0.274 0.726 36 H 0.125 0.875 37 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.018 18.641 -11.471 22.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.131 4.131 3 H 0.161 0.839 4 C -0.173 4.173 5 C -0.207 4.207 6 H 0.166 0.834 7 C 0.330 3.670 8 O -0.420 6.420 9 O -0.276 6.276 10 C 0.058 3.942 11 C -0.184 4.184 12 C -0.060 4.060 13 C -0.224 4.224 14 C 0.075 3.925 15 O -0.131 6.131 16 C -0.493 4.493 17 H 0.121 0.879 18 C -0.218 4.218 19 N -0.555 5.555 20 Si 0.838 3.162 21 H -0.181 1.181 22 H -0.196 1.196 23 H -0.181 1.181 24 C -0.264 4.264 25 C -0.062 4.062 26 H 0.065 0.935 27 H 0.091 0.909 28 H 0.069 0.931 29 H 0.112 0.888 30 H 0.153 0.847 31 H 0.099 0.901 32 H 0.101 0.899 33 H 0.167 0.833 34 H 0.138 0.862 35 H 0.083 0.917 36 H 0.143 0.857 37 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -7.191 18.207 -11.486 22.697 hybrid contribution 0.294 -0.601 1.054 1.249 sum -6.897 17.606 -10.432 21.596 Atomic orbital electron populations 1.21389 0.92501 1.01656 1.01728 1.22668 0.95907 0.94754 0.99774 0.83874 1.23300 1.04268 1.00898 0.88796 1.22018 1.02575 0.99208 0.96894 0.83361 1.23248 0.87525 0.80516 0.75744 1.90645 1.16962 1.74557 1.59825 1.86616 1.42557 1.36729 1.61717 1.21637 0.89635 0.87102 0.95792 1.19264 1.07893 0.96421 0.94779 1.20895 0.93851 0.91761 0.99473 1.20453 1.06827 1.02717 0.92453 1.19985 0.90887 0.88936 0.92720 1.83949 1.61309 1.38162 1.29704 1.21827 1.30017 1.08158 0.89338 0.87868 1.26612 0.95706 0.94711 1.04810 1.70171 1.34212 1.10939 1.40213 0.84644 0.78760 0.78600 0.74212 1.18088 1.19605 1.18111 1.21249 1.07123 0.96262 1.01773 1.20957 0.93842 0.97467 0.93935 0.93477 0.90893 0.93124 0.88751 0.84674 0.90113 0.89859 0.83329 0.86179 0.91686 0.85727 0.84160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.93 8.43 71.98 0.61 -1.32 16 2 C -0.11 -1.51 6.41 -10.79 -0.07 -1.58 16 3 H 0.14 1.16 8.14 -2.39 -0.02 1.14 16 4 C -0.14 -1.73 9.88 30.60 0.30 -1.43 16 5 C -0.19 -3.23 6.30 -11.54 -0.07 -3.31 16 6 H 0.15 2.11 8.14 -2.39 -0.02 2.09 16 7 C 0.48 11.99 7.72 71.24 0.55 12.54 16 8 O -0.53 -14.89 12.86 21.96 0.28 -14.61 16 9 O -0.36 -9.98 10.20 -51.31 -0.52 -10.50 16 10 C 0.13 3.55 5.59 71.24 0.40 3.95 16 11 C -0.18 -5.95 5.52 -19.83 -0.11 -6.06 16 12 C -0.04 -1.42 9.69 22.25 0.22 -1.20 16 13 C -0.21 -8.66 9.99 22.39 0.22 -8.44 16 14 C 0.13 6.22 6.65 22.58 0.15 6.37 16 15 O -0.23 -13.42 9.76 -22.72 -0.22 -13.64 16 16 C -0.42 -24.03 9.49 67.92 0.64 -23.38 16 17 H 0.10 5.41 5.20 -2.91 -0.02 5.40 16 18 C -0.02 -1.14 5.49 84.84 0.47 -0.67 16 19 N -0.92 -55.76 13.67 21.61 0.30 -55.47 16 20 Si 1.02 42.18 29.55 68.60 2.03 44.20 16 21 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 22 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 23 H -0.26 -9.98 7.11 99.48 0.71 -9.28 16 24 C -0.24 -10.58 9.17 22.39 0.21 -10.38 16 25 C -0.04 -1.54 9.69 22.25 0.22 -1.32 16 26 H 0.05 0.94 7.02 -2.39 -0.02 0.92 16 27 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.05 1.03 7.26 -2.38 -0.02 1.01 16 29 H 0.09 1.36 8.05 -2.39 -0.02 1.34 16 30 H 0.14 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.08 2.05 8.08 -2.38 -0.02 2.03 16 32 H 0.08 2.07 8.08 -2.39 -0.02 2.05 16 33 H 0.15 3.98 8.06 -2.91 -0.02 3.96 16 34 H 0.12 4.95 8.06 -2.91 -0.02 4.92 16 35 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 36 H 0.13 5.41 5.64 -2.91 -0.02 5.39 16 37 H 0.14 4.01 8.06 -2.91 -0.02 3.99 16 Total: -1.00 -70.94 321.77 6.67 -64.28 By element: Atomic # 1 Polarization: 20.90 SS G_CDS: 1.08 Total: 21.98 kcal Atomic # 6 Polarization: -39.97 SS G_CDS: 3.73 Total: -36.24 kcal Atomic # 7 Polarization: -55.76 SS G_CDS: 0.30 Total: -55.47 kcal Atomic # 8 Polarization: -38.29 SS G_CDS: -0.46 Total: -38.75 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.20 kcal Total: -70.94 6.67 -64.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733392388.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.945 kcal (2) G-P(sol) polarization free energy of solvation -70.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds