Wall clock time and date at job start Mon Mar 30 2020 01:41:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31548 * 1 3 3 Si 1.86797 * 119.99959 * 2 1 4 4 H 1.48509 * 109.47151 * 239.99924 * 3 2 1 5 5 H 1.48497 * 109.47368 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47382 * 120.00179 * 3 2 1 7 7 C 1.38659 * 120.00020 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99614 * 179.97438 * 7 2 1 9 9 O 1.34828 * 120.00203 * 0.02562 * 7 2 1 10 10 C 1.35744 * 116.99997 * 185.05612 * 9 7 2 11 11 C 1.38881 * 120.07159 * 354.46844 * 10 9 7 12 12 C 1.38103 * 119.93128 * 180.02562 * 11 10 9 13 13 C 1.38305 * 120.06698 * 0.02562 * 12 11 10 14 14 C 1.50697 * 119.92936 * 179.97438 * 13 12 11 15 15 O 1.45208 * 109.47158 * 89.99541 * 14 13 12 16 16 C 1.34221 * 116.99938 * 180.02562 * 15 14 13 17 17 O 1.20825 * 120.00462 * 359.97438 * 16 15 14 18 18 C 1.50708 * 119.99927 * 180.02562 * 16 15 14 19 19 C 1.53780 * 113.61206 * 279.13366 * 18 16 15 20 20 C 1.53948 * 87.01927 * 220.04647 * 19 18 16 21 21 C 1.53781 * 87.11331 * 25.36632 * 20 19 18 22 22 C 1.38296 * 120.13873 * 0.24984 * 13 12 11 23 23 C 1.38096 * 120.07087 * 359.45298 * 22 13 12 24 24 H 0.96998 * 120.00617 * 0.02562 * 1 2 3 25 25 H 1.07998 * 120.02972 * 359.97438 * 11 10 9 26 26 H 1.07998 * 119.96515 * 179.97438 * 12 11 10 27 27 H 1.09007 * 109.47396 * 330.00074 * 14 13 12 28 28 H 1.08994 * 109.47463 * 209.99896 * 14 13 12 29 29 H 1.08997 * 112.84739 * 50.32829 * 18 16 15 30 30 H 1.09005 * 113.61651 * 334.57117 * 19 18 16 31 31 H 1.09006 * 113.61197 * 105.47091 * 19 18 16 32 32 H 1.08998 * 113.54260 * 270.81086 * 20 19 18 33 33 H 1.09000 * 113.66545 * 139.93608 * 20 19 18 34 34 H 1.08998 * 113.61600 * 220.09002 * 21 20 19 35 35 H 1.08995 * 113.69362 * 89.19615 * 21 20 19 36 36 H 1.08002 * 119.96511 * 179.70901 * 22 13 12 37 37 H 1.08002 * 120.03868 * 180.27646 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.1033 1.6964 -1.2126 5 1 1.2845 2.7464 -0.0006 6 1 3.1033 1.6964 1.2125 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2007 0.0001 9 8 1.3347 -2.3685 0.0005 10 6 2.0699 -3.5045 0.1077 11 6 3.4572 -3.4394 0.0953 12 6 4.2023 -4.5971 0.2040 13 6 3.5685 -5.8204 0.3245 14 6 4.3846 -7.0817 0.4422 15 8 4.6529 -7.3557 1.8428 16 6 5.3748 -8.4523 2.1218 17 8 5.7692 -9.1602 1.2256 18 6 5.6925 -8.8013 3.5530 19 6 6.8798 -8.0127 4.1304 20 6 7.3112 -9.3211 4.8173 21 6 6.5573 -10.0642 3.7018 22 6 2.1872 -5.8891 0.3314 23 6 1.4365 -4.7345 0.2292 24 1 -0.4851 0.8400 -0.0004 25 1 3.9526 -2.4845 0.0000 26 1 5.2811 -4.5471 0.1940 27 1 5.3274 -6.9556 -0.0903 28 1 3.8311 -7.9145 0.0086 29 1 4.8118 -8.7970 4.1952 30 1 7.5825 -7.6647 3.3732 31 1 6.5853 -7.2287 4.8281 32 1 6.8739 -9.4584 5.8062 33 1 8.3882 -9.4884 4.8028 34 1 6.0029 -10.9340 4.0539 35 1 7.1705 -10.2790 2.8267 36 1 1.6952 -6.8463 0.4209 37 1 0.3579 -4.7884 0.2392 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733428022.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:24 Heat of formation + Delta-G solvation = -74.200932 kcal Electronic energy + Delta-G solvation = -20079.788210 eV Core-core repulsion = 16788.545091 eV Total energy + Delta-G solvation = -3291.243119 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.72782 -39.15252 -38.30804 -36.82416 -35.91026 -32.44628 -30.64155 -30.24368 -27.60874 -25.98072 -25.85201 -24.71705 -22.06448 -21.66494 -20.58646 -19.58117 -18.09194 -17.85459 -17.19265 -16.59566 -16.30768 -15.51277 -14.85996 -14.63966 -14.45270 -13.88122 -13.72505 -13.43442 -13.20083 -12.79268 -12.78566 -12.52892 -12.50435 -12.15166 -11.73788 -11.54340 -11.37890 -11.03166 -10.87935 -10.82393 -10.76071 -10.67878 -10.51724 -10.42287 -10.21905 -9.42009 -8.90698 -8.27097 -7.33291 -6.52634 -4.11450 1.96302 2.15064 2.20893 2.98590 3.09515 3.12773 3.13672 3.90921 4.15193 4.25679 4.42410 4.47911 4.59106 4.97448 5.05371 5.16171 5.21073 5.24566 5.27682 5.36208 5.45032 5.59106 5.62010 5.64585 5.65260 5.74320 5.76867 6.08019 6.12692 6.33007 6.56388 6.59770 6.80699 6.96557 7.14784 7.26833 7.35158 7.71405 7.83657 7.92025 8.92456 9.60436 10.64813 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.030400 B = 0.003086 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.828539 B = 9070.497011 C = 9554.853209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.041 3.959 3 Si 0.942 3.058 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.394 4.394 8 H 0.093 0.907 9 O -0.172 6.172 10 C 0.163 3.837 11 C -0.238 4.238 12 C -0.045 4.045 13 C -0.204 4.204 14 C 0.128 3.872 15 O -0.348 6.348 16 C 0.466 3.534 17 O -0.517 6.517 18 C -0.113 4.113 19 C -0.122 4.122 20 C -0.141 4.141 21 C -0.121 4.121 22 C -0.049 4.049 23 C -0.196 4.196 24 H 0.272 0.728 25 H 0.130 0.870 26 H 0.108 0.892 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.124 0.876 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.095 0.905 36 H 0.113 0.887 37 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.356 -14.147 7.084 19.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.164 4.164 3 Si 0.767 3.233 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.194 1.194 7 C -0.470 4.470 8 H 0.111 0.889 9 O -0.074 6.074 10 C 0.108 3.892 11 C -0.257 4.257 12 C -0.063 4.063 13 C -0.205 4.205 14 C 0.056 3.944 15 O -0.265 6.265 16 C 0.309 3.691 17 O -0.406 6.406 18 C -0.133 4.133 19 C -0.160 4.160 20 C -0.179 4.179 21 C -0.158 4.158 22 C -0.067 4.067 23 C -0.215 4.215 24 H 0.082 0.918 25 H 0.147 0.853 26 H 0.126 0.874 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.142 0.858 30 H 0.104 0.896 31 H 0.101 0.899 32 H 0.104 0.896 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.113 0.887 36 H 0.131 0.869 37 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 10.998 -14.087 6.750 19.104 hybrid contribution 0.397 0.844 -0.201 0.954 sum 11.394 -13.243 6.549 18.657 Atomic orbital electron populations 1.70021 1.06026 1.28015 1.45291 1.25321 0.95861 0.98939 0.96297 0.85759 0.78727 0.79562 0.79283 1.19416 1.20199 1.19381 1.21326 0.91883 0.80728 1.53093 0.88928 1.83975 1.34503 1.11553 1.77383 1.19435 0.90315 0.88042 0.91400 1.21140 0.93781 0.98851 1.11925 1.20615 0.98398 0.91523 0.95801 1.18871 0.93360 0.92886 1.15372 1.21701 0.98877 0.95826 0.78045 1.86676 1.65179 1.42841 1.31791 1.23587 0.74694 0.78514 0.92259 1.90625 1.50535 1.50774 1.48687 1.22599 1.00214 0.99692 0.90745 1.22874 0.95671 0.97360 1.00095 1.22864 1.00935 0.95850 0.98216 1.22910 0.97799 0.95472 0.99647 1.20505 0.92620 0.96978 0.96634 1.20197 0.99698 0.90137 1.11468 0.91799 0.85268 0.87362 0.91338 0.91263 0.85827 0.89568 0.89926 0.89592 0.90707 0.90607 0.88654 0.86910 0.86198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.81 13.67 55.48 0.76 -24.05 16 2 C 0.04 1.10 5.49 -17.52 -0.10 1.01 16 3 Si 0.94 20.11 29.55 -169.99 -5.02 15.09 16 4 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 5 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 6 H -0.27 -5.56 7.11 56.52 0.40 -5.15 16 7 C -0.39 -10.83 9.49 30.89 0.29 -10.54 16 8 H 0.09 2.34 5.20 -52.48 -0.27 2.07 16 9 O -0.17 -4.82 9.76 0.07 0.00 -4.82 16 10 C 0.16 3.89 6.65 -39.10 -0.26 3.63 16 11 C -0.24 -5.10 9.17 -39.39 -0.36 -5.46 16 12 C -0.04 -0.83 9.69 -39.61 -0.38 -1.22 16 13 C -0.20 -3.60 5.52 -104.58 -0.58 -4.18 16 14 C 0.13 1.96 5.59 36.00 0.20 2.16 16 15 O -0.35 -5.32 10.20 -39.23 -0.40 -5.72 16 16 C 0.47 6.35 7.48 36.01 0.27 6.62 16 17 O -0.52 -8.17 15.66 -18.75 -0.29 -8.47 16 18 C -0.11 -1.11 4.25 -90.95 -0.39 -1.49 16 19 C -0.12 -1.02 7.64 -25.83 -0.20 -1.22 16 20 C -0.14 -0.94 8.09 -25.83 -0.21 -1.15 16 21 C -0.12 -1.00 7.40 -25.92 -0.19 -1.20 16 22 C -0.05 -0.88 9.69 -39.61 -0.38 -1.27 16 23 C -0.20 -4.09 9.99 -39.39 -0.39 -4.49 16 24 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 25 H 0.13 2.75 5.64 -52.49 -0.30 2.45 16 26 H 0.11 1.72 8.06 -52.49 -0.42 1.29 16 27 H 0.07 1.00 8.08 -51.92 -0.42 0.58 16 28 H 0.07 1.00 8.07 -51.93 -0.42 0.58 16 29 H 0.12 1.03 8.14 -51.93 -0.42 0.60 16 30 H 0.09 0.77 8.09 -51.93 -0.42 0.35 16 31 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.09 0.91 7.45 -51.93 -0.39 0.53 16 36 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 37 H 0.12 2.40 8.06 -52.49 -0.42 1.97 16 LS Contribution 322.05 15.07 4.85 4.85 Total: -1.00 -31.12 322.05 -7.51 -38.63 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -4.73 Total: 3.28 kcal Atomic # 6 Polarization: -16.12 SS G_CDS: -2.68 Total: -18.80 kcal Atomic # 7 Polarization: -24.81 SS G_CDS: 0.76 Total: -24.05 kcal Atomic # 8 Polarization: -18.31 SS G_CDS: -0.69 Total: -19.00 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -31.12 -7.51 -38.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733428022.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.566 kcal (2) G-P(sol) polarization free energy of solvation -31.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds