Wall clock time and date at job start Mon Mar 30 2020 01:41:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31548 * 1 3 3 Si 1.86797 * 119.99959 * 2 1 4 4 H 1.48509 * 109.47151 * 239.99924 * 3 2 1 5 5 H 1.48497 * 109.47368 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47382 * 120.00179 * 3 2 1 7 7 C 1.38659 * 120.00020 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99614 * 179.97438 * 7 2 1 9 9 O 1.34828 * 120.00203 * 0.02562 * 7 2 1 10 10 C 1.35744 * 116.99997 * 185.05612 * 9 7 2 11 11 C 1.38881 * 120.07159 * 354.46844 * 10 9 7 12 12 C 1.38103 * 119.93128 * 180.02562 * 11 10 9 13 13 C 1.38305 * 120.06698 * 0.02562 * 12 11 10 14 14 C 1.50697 * 119.92936 * 179.97438 * 13 12 11 15 15 O 1.45208 * 109.47158 * 89.99541 * 14 13 12 16 16 C 1.34221 * 116.99938 * 180.02562 * 15 14 13 17 17 O 1.20825 * 120.00462 * 359.97438 * 16 15 14 18 18 C 1.50708 * 119.99927 * 180.02562 * 16 15 14 19 19 C 1.53780 * 113.61206 * 279.13366 * 18 16 15 20 20 C 1.53948 * 87.01927 * 220.04647 * 19 18 16 21 21 C 1.53781 * 87.11331 * 25.36632 * 20 19 18 22 22 C 1.38296 * 120.13873 * 0.24984 * 13 12 11 23 23 C 1.38096 * 120.07087 * 359.45298 * 22 13 12 24 24 H 0.96998 * 120.00617 * 0.02562 * 1 2 3 25 25 H 1.07998 * 120.02972 * 359.97438 * 11 10 9 26 26 H 1.07998 * 119.96515 * 179.97438 * 12 11 10 27 27 H 1.09007 * 109.47396 * 330.00074 * 14 13 12 28 28 H 1.08994 * 109.47463 * 209.99896 * 14 13 12 29 29 H 1.08997 * 112.84739 * 50.32829 * 18 16 15 30 30 H 1.09005 * 113.61651 * 334.57117 * 19 18 16 31 31 H 1.09006 * 113.61197 * 105.47091 * 19 18 16 32 32 H 1.08998 * 113.54260 * 270.81086 * 20 19 18 33 33 H 1.09000 * 113.66545 * 139.93608 * 20 19 18 34 34 H 1.08998 * 113.61600 * 220.09002 * 21 20 19 35 35 H 1.08995 * 113.69362 * 89.19615 * 21 20 19 36 36 H 1.08002 * 119.96511 * 179.70901 * 22 13 12 37 37 H 1.08002 * 120.03868 * 180.27646 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.1033 1.6964 -1.2126 5 1 1.2845 2.7464 -0.0006 6 1 3.1033 1.6964 1.2125 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2007 0.0001 9 8 1.3347 -2.3685 0.0005 10 6 2.0699 -3.5045 0.1077 11 6 3.4572 -3.4394 0.0953 12 6 4.2023 -4.5971 0.2040 13 6 3.5685 -5.8204 0.3245 14 6 4.3846 -7.0817 0.4422 15 8 4.6529 -7.3557 1.8428 16 6 5.3748 -8.4523 2.1218 17 8 5.7692 -9.1602 1.2256 18 6 5.6925 -8.8013 3.5530 19 6 6.8798 -8.0127 4.1304 20 6 7.3112 -9.3211 4.8173 21 6 6.5573 -10.0642 3.7018 22 6 2.1872 -5.8891 0.3314 23 6 1.4365 -4.7345 0.2292 24 1 -0.4851 0.8400 -0.0004 25 1 3.9526 -2.4845 0.0000 26 1 5.2811 -4.5471 0.1940 27 1 5.3274 -6.9556 -0.0903 28 1 3.8311 -7.9145 0.0086 29 1 4.8118 -8.7970 4.1952 30 1 7.5825 -7.6647 3.3732 31 1 6.5853 -7.2287 4.8281 32 1 6.8739 -9.4584 5.8062 33 1 8.3882 -9.4884 4.8028 34 1 6.0029 -10.9340 4.0539 35 1 7.1705 -10.2790 2.8267 36 1 1.6952 -6.8463 0.4209 37 1 0.3579 -4.7884 0.2392 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733428022.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:24 Heat of formation + Delta-G solvation = -91.066234 kcal Electronic energy + Delta-G solvation = -20080.519544 eV Core-core repulsion = 16788.545091 eV Total energy + Delta-G solvation = -3291.974453 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.77739 -40.82395 -39.25093 -38.34720 -37.17886 -34.37994 -32.18833 -31.85091 -28.60961 -27.58441 -26.59815 -26.19888 -23.70888 -22.70260 -22.10285 -20.31702 -19.91497 -18.93999 -18.87165 -17.81198 -17.42868 -16.48397 -16.34305 -16.17369 -15.94931 -15.58265 -15.26370 -14.71696 -14.45934 -14.37223 -13.88580 -13.62062 -13.49535 -13.43318 -13.09840 -13.01246 -12.60524 -12.45824 -12.29123 -12.21598 -12.15247 -11.70075 -11.48259 -11.35425 -11.23800 -11.22260 -10.81304 -9.86245 -9.07529 -8.49692 -6.18439 0.42373 0.53441 1.15697 1.35641 1.45136 1.51845 1.86192 2.16800 2.81034 3.12869 3.43753 3.45397 3.59129 3.74307 3.86828 3.89157 3.89864 4.07837 4.15061 4.27380 4.43817 4.52862 4.68263 4.71882 4.75992 4.83765 4.96851 5.02961 5.09897 5.10562 5.11215 5.20413 5.40938 5.48341 5.52767 5.63946 5.66910 5.98909 6.09805 6.74139 6.94557 7.72206 8.72849 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.030400 B = 0.003086 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.828539 B = 9070.497011 C = 9554.853209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.020 4.020 3 Si 1.019 2.981 4 H -0.257 1.257 5 H -0.272 1.272 6 H -0.256 1.256 7 C -0.418 4.418 8 H 0.104 0.896 9 O -0.225 6.225 10 C 0.126 3.874 11 C -0.245 4.245 12 C -0.044 4.044 13 C -0.182 4.182 14 C 0.128 3.872 15 O -0.358 6.358 16 C 0.466 3.534 17 O -0.541 6.541 18 C -0.118 4.118 19 C -0.125 4.125 20 C -0.128 4.128 21 C -0.122 4.122 22 C -0.042 4.042 23 C -0.205 4.205 24 H 0.274 0.726 25 H 0.125 0.875 26 H 0.140 0.860 27 H 0.079 0.921 28 H 0.083 0.917 29 H 0.142 0.858 30 H 0.076 0.924 31 H 0.090 0.910 32 H 0.104 0.896 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.149 0.851 37 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.723 -15.872 8.292 22.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.218 4.218 3 Si 0.838 3.162 4 H -0.181 1.181 5 H -0.196 1.196 6 H -0.181 1.181 7 C -0.493 4.493 8 H 0.121 0.879 9 O -0.131 6.131 10 C 0.075 3.925 11 C -0.264 4.264 12 C -0.062 4.062 13 C -0.183 4.183 14 C 0.055 3.945 15 O -0.275 6.275 16 C 0.311 3.689 17 O -0.432 6.432 18 C -0.137 4.137 19 C -0.163 4.163 20 C -0.165 4.165 21 C -0.159 4.159 22 C -0.060 4.060 23 C -0.224 4.224 24 H 0.083 0.917 25 H 0.143 0.857 26 H 0.158 0.842 27 H 0.098 0.902 28 H 0.101 0.899 29 H 0.160 0.840 30 H 0.095 0.905 31 H 0.109 0.891 32 H 0.122 0.878 33 H 0.102 0.898 34 H 0.107 0.893 35 H 0.097 0.903 36 H 0.167 0.833 37 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 13.401 -15.872 7.967 22.248 hybrid contribution -0.200 0.978 -0.548 1.138 sum 13.202 -14.894 7.419 21.240 Atomic orbital electron populations 1.70166 1.08071 1.29061 1.48270 1.26608 0.96836 1.02782 0.95588 0.84647 0.77422 0.74158 0.80009 1.18101 1.19624 1.18063 1.21830 0.92653 0.81312 1.53551 0.87853 1.83948 1.36005 1.12630 1.80551 1.19984 0.91600 0.88003 0.92932 1.21248 0.93078 0.99980 1.12073 1.20952 0.99950 0.90708 0.94570 1.19254 0.93550 0.93733 1.11770 1.21648 0.99218 0.94803 0.78787 1.86655 1.65802 1.43877 1.31152 1.24370 0.73546 0.77410 0.93605 1.90618 1.51425 1.51348 1.49794 1.22903 1.01476 1.00911 0.88372 1.22933 0.94841 0.98383 1.00123 1.22850 1.01464 0.93835 0.98318 1.22928 0.97655 0.95569 0.99770 1.20892 0.92910 0.97361 0.94846 1.20450 1.00239 0.90248 1.11505 0.91683 0.85719 0.84176 0.90229 0.89917 0.84032 0.90485 0.89107 0.87763 0.89842 0.89289 0.90284 0.83322 0.86187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.72 13.67 21.61 0.30 -55.43 16 2 C -0.02 -1.12 5.49 84.84 0.47 -0.66 16 3 Si 1.02 42.06 29.55 68.60 2.03 44.09 16 4 H -0.26 -9.94 7.11 99.48 0.71 -9.24 16 5 H -0.27 -10.80 7.11 99.48 0.71 -10.10 16 6 H -0.26 -9.92 7.11 99.48 0.71 -9.22 16 7 C -0.42 -23.98 9.49 67.92 0.64 -23.34 16 8 H 0.10 5.41 5.20 -2.91 -0.02 5.39 16 9 O -0.23 -13.40 9.76 -22.66 -0.22 -13.62 16 10 C 0.13 6.20 6.65 22.58 0.15 6.35 16 11 C -0.24 -10.53 9.17 22.39 0.21 -10.32 16 12 C -0.04 -1.53 9.69 22.25 0.22 -1.31 16 13 C -0.18 -5.92 5.52 -19.84 -0.11 -6.03 16 14 C 0.13 3.49 5.59 71.24 0.40 3.89 16 15 O -0.36 -9.85 10.20 -51.33 -0.52 -10.37 16 16 C 0.47 11.52 7.48 71.24 0.53 12.05 16 17 O -0.54 -15.99 15.66 21.97 0.34 -15.64 16 18 C -0.12 -1.96 4.25 -11.01 -0.05 -2.01 16 19 C -0.13 -1.74 7.64 31.18 0.24 -1.51 16 20 C -0.13 -1.28 8.09 31.18 0.25 -1.03 16 21 C -0.12 -1.70 7.40 31.12 0.23 -1.47 16 22 C -0.04 -1.43 9.69 22.25 0.22 -1.21 16 23 C -0.21 -8.63 9.99 22.39 0.22 -8.41 16 24 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 25 H 0.13 5.39 5.64 -2.91 -0.02 5.37 16 26 H 0.14 3.98 8.06 -2.91 -0.02 3.96 16 27 H 0.08 2.04 8.08 -2.38 -0.02 2.02 16 28 H 0.08 2.08 8.07 -2.39 -0.02 2.06 16 29 H 0.14 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.08 1.21 8.09 -2.38 -0.02 1.19 16 31 H 0.09 1.12 8.14 -2.38 -0.02 1.10 16 32 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.08 1.38 7.45 -2.39 -0.02 1.36 16 36 H 0.15 3.97 8.06 -2.91 -0.02 3.95 16 37 H 0.12 4.93 8.06 -2.91 -0.02 4.91 16 Total: -1.00 -71.13 322.05 6.61 -64.52 By element: Atomic # 1 Polarization: 20.37 SS G_CDS: 1.08 Total: 21.45 kcal Atomic # 6 Polarization: -38.61 SS G_CDS: 3.62 Total: -34.99 kcal Atomic # 7 Polarization: -55.72 SS G_CDS: 0.30 Total: -55.43 kcal Atomic # 8 Polarization: -39.23 SS G_CDS: -0.40 Total: -39.63 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.09 kcal Total: -71.13 6.61 -64.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733428022.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.548 kcal (2) G-P(sol) polarization free energy of solvation -71.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds