Wall clock time and date at job start Mon Mar 30 2020 01:41:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31558 * 1 3 3 Si 1.86795 * 120.00260 * 2 1 4 4 H 1.48498 * 109.47181 * 269.99705 * 3 2 1 5 5 H 1.48498 * 109.47260 * 30.00086 * 3 2 1 6 6 H 1.48502 * 109.47130 * 149.99905 * 3 2 1 7 7 C 1.38659 * 119.99705 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99848 * 0.02562 * 7 2 1 9 9 O 1.34828 * 120.00122 * 180.02562 * 7 2 1 10 10 C 1.35750 * 117.00075 * 174.94542 * 9 7 2 11 11 C 1.38880 * 120.06526 * 185.25998 * 10 9 7 12 12 C 1.38105 * 119.92781 * 179.76650 * 11 10 9 13 13 C 1.38304 * 120.06646 * 0.48744 * 12 11 10 14 14 C 1.50707 * 119.92974 * 179.74714 * 13 12 11 15 15 O 1.45202 * 109.46539 * 270.02172 * 14 13 12 16 16 C 1.34232 * 116.99441 * 179.97438 * 15 14 13 17 17 O 1.20821 * 120.00402 * 0.02562 * 16 15 14 18 18 C 1.50699 * 119.99935 * 179.97438 * 16 15 14 19 19 C 1.53002 * 109.47526 * 180.02562 * 18 16 15 20 20 C 1.52991 * 117.50212 * 243.62651 * 19 18 16 21 21 C 1.52997 * 117.50120 * 174.99826 * 19 18 16 22 22 C 1.38302 * 120.13995 * 359.76849 * 13 12 11 23 23 C 1.38101 * 120.06877 * 359.97438 * 22 13 12 24 24 H 0.96997 * 119.99350 * 359.97438 * 1 2 3 25 25 H 1.07996 * 120.04097 * 0.02562 * 11 10 9 26 26 H 1.07996 * 119.96589 * 180.23432 * 12 11 10 27 27 H 1.09002 * 109.47040 * 30.01809 * 14 13 12 28 28 H 1.08995 * 109.46954 * 150.02268 * 14 13 12 29 29 H 1.09006 * 109.47085 * 300.00147 * 18 16 15 30 30 H 1.08996 * 109.47077 * 60.00208 * 18 16 15 31 31 H 1.09003 * 115.54658 * 29.33409 * 19 18 16 32 32 H 1.09002 * 117.49881 * 359.97438 * 20 19 18 33 33 H 1.08996 * 117.50159 * 145.02003 * 20 19 18 34 34 H 1.09000 * 117.50061 * 214.97999 * 21 19 18 35 35 H 1.08998 * 117.49978 * 0.02562 * 21 19 18 36 36 H 1.07999 * 119.96521 * 179.97438 * 22 13 12 37 37 H 1.07997 * 120.03156 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6176 0.0000 4 1 2.4972 2.0463 -1.4000 5 1 1.4472 2.6526 0.7000 6 1 3.5472 1.4400 0.7001 7 6 2.0088 -1.2009 0.0005 8 1 1.4687 -2.1362 0.0005 9 8 3.3571 -1.2010 0.0011 10 6 3.9733 -2.4058 0.1081 11 6 5.3555 -2.4724 0.2252 12 6 5.9791 -3.6994 0.3388 13 6 5.2293 -4.8615 0.3260 14 6 5.9134 -6.1991 0.4444 15 8 6.2508 -6.6890 -0.8802 16 6 6.8705 -7.8777 -0.9506 17 8 7.1222 -8.4887 0.0609 18 6 7.2514 -8.4506 -2.2914 19 6 7.9382 -9.8031 -2.0917 20 6 9.3994 -9.9247 -2.5283 21 6 8.2981 -10.6044 -3.3444 22 6 3.8530 -4.7987 0.2042 23 6 3.2232 -3.5745 0.0955 24 1 -0.4849 0.8401 0.0004 25 1 5.9419 -1.5655 0.2316 26 1 7.0536 -3.7518 0.4337 27 1 6.8234 -6.0908 1.0345 28 1 5.2448 -6.9070 0.9342 29 1 6.3550 -8.5846 -2.8971 30 1 7.9334 -7.7677 -2.7978 31 1 7.6282 -10.3619 -1.2087 32 1 9.8715 -9.0412 -2.9581 33 1 10.0513 -10.5635 -1.9323 34 1 8.2255 -11.6904 -3.2853 35 1 8.0461 -10.1679 -4.3108 36 1 3.2703 -5.7079 0.1941 37 1 2.1485 -3.5262 0.0001 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733439196.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:30 Heat of formation + Delta-G solvation = -68.860571 kcal Electronic energy + Delta-G solvation = -19801.260636 eV Core-core repulsion = 16510.249093 eV Total energy + Delta-G solvation = -3291.011544 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.50741 -39.26558 -37.83027 -36.96440 -36.00259 -32.53056 -31.09853 -30.36581 -29.82238 -26.25629 -24.68530 -22.72269 -22.23342 -22.09003 -20.58084 -20.25785 -18.00956 -17.70927 -17.44736 -16.77072 -16.49386 -15.39793 -14.94681 -14.62532 -14.47692 -14.13090 -13.89853 -13.68998 -13.52755 -12.90250 -12.67593 -12.64914 -12.27635 -12.15323 -11.85467 -11.80543 -11.51185 -11.04414 -10.86949 -10.78615 -10.74582 -10.52193 -10.47719 -10.28014 -10.21007 -9.47798 -8.95551 -8.36943 -7.49220 -6.49972 -4.16786 1.84040 2.04356 2.19399 2.87665 3.18374 3.20807 3.34971 3.47700 4.16891 4.31390 4.35208 4.55221 4.61249 4.73410 4.79363 5.02716 5.10688 5.12564 5.16653 5.22892 5.30054 5.31155 5.53129 5.55559 5.61949 5.66572 5.77355 5.93469 6.03238 6.22204 6.44550 6.51567 6.67784 6.91526 7.11171 7.18347 7.49419 7.70773 7.77659 7.94256 8.84444 9.44941 10.57134 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.043214 B = 0.002742 C = 0.002726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.788056 B =10207.426753 C =10270.647023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.064 3.936 3 Si 0.906 3.094 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.259 1.259 7 C -0.392 4.392 8 H 0.108 0.892 9 O -0.212 6.212 10 C 0.169 3.831 11 C -0.196 4.196 12 C -0.051 4.051 13 C -0.196 4.196 14 C 0.128 3.872 15 O -0.352 6.352 16 C 0.461 3.539 17 O -0.515 6.515 18 C -0.086 4.086 19 C -0.149 4.149 20 C -0.178 4.178 21 C -0.177 4.177 22 C -0.046 4.046 23 C -0.225 4.225 24 H 0.281 0.719 25 H 0.120 0.880 26 H 0.115 0.885 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.109 0.891 30 H 0.106 0.894 31 H 0.119 0.881 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.112 0.888 37 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.323 -15.180 -4.457 21.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.183 1.183 7 C -0.467 4.467 8 H 0.125 0.875 9 O -0.116 6.116 10 C 0.116 3.884 11 C -0.215 4.215 12 C -0.069 4.069 13 C -0.197 4.197 14 C 0.055 3.945 15 O -0.269 6.269 16 C 0.304 3.696 17 O -0.403 6.403 18 C -0.123 4.123 19 C -0.167 4.167 20 C -0.215 4.215 21 C -0.213 4.213 22 C -0.065 4.065 23 C -0.244 4.244 24 H 0.091 0.909 25 H 0.138 0.862 26 H 0.133 0.867 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.128 0.872 30 H 0.124 0.876 31 H 0.137 0.863 32 H 0.114 0.886 33 H 0.114 0.886 34 H 0.115 0.885 35 H 0.115 0.885 36 H 0.130 0.870 37 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 14.236 -14.941 -4.142 21.049 hybrid contribution 0.057 0.656 0.119 0.669 sum 14.293 -14.285 -4.023 20.604 Atomic orbital electron populations 1.69644 1.05607 1.28684 1.47266 1.24497 0.95059 0.98950 0.95456 0.86163 0.80333 0.81278 0.79055 1.19776 1.20702 1.18289 1.20803 0.76753 0.96762 1.52375 0.87454 1.83570 1.22791 1.25817 1.79393 1.19185 0.91735 0.85495 0.91973 1.20190 0.91982 0.97848 1.11473 1.20511 0.98369 0.91221 0.96798 1.18949 0.93622 0.92311 1.14799 1.21703 0.99142 0.93096 0.80526 1.86646 1.69400 1.34976 1.35848 1.23568 0.74373 0.79481 0.92198 1.90634 1.51563 1.60285 1.37857 1.20931 1.03003 0.95663 0.92700 1.22112 0.98030 0.96626 0.99929 1.23073 0.91473 1.03312 1.03659 1.23013 1.03492 0.99400 0.95441 1.20679 0.93265 0.96979 0.95559 1.21264 1.01299 0.91669 1.10170 0.90893 0.86192 0.86712 0.91125 0.91097 0.87242 0.87628 0.86285 0.88593 0.88625 0.88501 0.88474 0.87025 0.84632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.78 13.96 55.48 0.77 -24.00 16 2 C 0.06 1.77 5.49 -17.51 -0.10 1.67 16 3 Si 0.91 21.19 28.62 -169.99 -4.86 16.33 16 4 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.26 -6.07 7.11 56.52 0.40 -5.66 16 7 C -0.39 -10.79 9.95 30.89 0.31 -10.48 16 8 H 0.11 3.01 5.44 -52.48 -0.29 2.73 16 9 O -0.21 -5.45 8.59 0.05 0.00 -5.45 16 10 C 0.17 3.81 6.65 -39.11 -0.26 3.55 16 11 C -0.20 -3.77 9.99 -39.39 -0.39 -4.17 16 12 C -0.05 -0.85 9.69 -39.61 -0.38 -1.23 16 13 C -0.20 -3.27 5.52 -104.57 -0.58 -3.85 16 14 C 0.13 1.85 5.59 36.01 0.20 2.05 16 15 O -0.35 -5.02 10.20 -39.26 -0.40 -5.42 16 16 C 0.46 5.84 7.96 36.00 0.29 6.13 16 17 O -0.51 -7.76 15.31 -18.75 -0.29 -8.04 16 18 C -0.09 -0.75 6.09 -27.88 -0.17 -0.92 16 19 C -0.15 -1.27 5.41 -90.62 -0.49 -1.76 16 20 C -0.18 -1.29 10.18 -26.73 -0.27 -1.56 16 21 C -0.18 -1.16 10.25 -26.73 -0.27 -1.43 16 22 C -0.05 -0.83 9.69 -39.61 -0.38 -1.22 16 23 C -0.22 -4.73 9.17 -39.40 -0.36 -5.09 16 24 H 0.28 7.33 8.31 -40.82 -0.34 6.99 16 25 H 0.12 2.13 8.06 -52.49 -0.42 1.71 16 26 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 27 H 0.07 0.95 8.08 -51.93 -0.42 0.54 16 28 H 0.07 0.98 8.08 -51.93 -0.42 0.56 16 29 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.11 0.77 7.88 -51.93 -0.41 0.36 16 31 H 0.12 1.19 7.31 -51.93 -0.38 0.81 16 32 H 0.10 0.62 8.03 -51.93 -0.42 0.21 16 33 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 37 H 0.14 2.98 5.64 -52.49 -0.30 2.68 16 LS Contribution 325.13 15.07 4.90 4.90 Total: -1.00 -30.04 325.13 -7.47 -37.51 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -4.72 Total: 2.48 kcal Atomic # 6 Polarization: -15.44 SS G_CDS: -2.87 Total: -18.30 kcal Atomic # 7 Polarization: -24.78 SS G_CDS: 0.77 Total: -24.00 kcal Atomic # 8 Polarization: -18.22 SS G_CDS: -0.69 Total: -18.91 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.86 Total: 16.33 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.04 -7.47 -37.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733439196.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.353 kcal (2) G-P(sol) polarization free energy of solvation -30.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds