Wall clock time and date at job start Mon Mar 30 2020 01:41:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31558 * 1 3 3 Si 1.86795 * 120.00260 * 2 1 4 4 H 1.48498 * 109.47181 * 269.99705 * 3 2 1 5 5 H 1.48498 * 109.47260 * 30.00086 * 3 2 1 6 6 H 1.48502 * 109.47130 * 149.99905 * 3 2 1 7 7 C 1.38659 * 119.99705 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99848 * 0.02562 * 7 2 1 9 9 O 1.34828 * 120.00122 * 180.02562 * 7 2 1 10 10 C 1.35750 * 117.00075 * 174.94542 * 9 7 2 11 11 C 1.38880 * 120.06526 * 185.25998 * 10 9 7 12 12 C 1.38105 * 119.92781 * 179.76650 * 11 10 9 13 13 C 1.38304 * 120.06646 * 0.48744 * 12 11 10 14 14 C 1.50707 * 119.92974 * 179.74714 * 13 12 11 15 15 O 1.45202 * 109.46539 * 270.02172 * 14 13 12 16 16 C 1.34232 * 116.99441 * 179.97438 * 15 14 13 17 17 O 1.20821 * 120.00402 * 0.02562 * 16 15 14 18 18 C 1.50699 * 119.99935 * 179.97438 * 16 15 14 19 19 C 1.53002 * 109.47526 * 180.02562 * 18 16 15 20 20 C 1.52991 * 117.50212 * 243.62651 * 19 18 16 21 21 C 1.52997 * 117.50120 * 174.99826 * 19 18 16 22 22 C 1.38302 * 120.13995 * 359.76849 * 13 12 11 23 23 C 1.38101 * 120.06877 * 359.97438 * 22 13 12 24 24 H 0.96997 * 119.99350 * 359.97438 * 1 2 3 25 25 H 1.07996 * 120.04097 * 0.02562 * 11 10 9 26 26 H 1.07996 * 119.96589 * 180.23432 * 12 11 10 27 27 H 1.09002 * 109.47040 * 30.01809 * 14 13 12 28 28 H 1.08995 * 109.46954 * 150.02268 * 14 13 12 29 29 H 1.09006 * 109.47085 * 300.00147 * 18 16 15 30 30 H 1.08996 * 109.47077 * 60.00208 * 18 16 15 31 31 H 1.09003 * 115.54658 * 29.33409 * 19 18 16 32 32 H 1.09002 * 117.49881 * 359.97438 * 20 19 18 33 33 H 1.08996 * 117.50159 * 145.02003 * 20 19 18 34 34 H 1.09000 * 117.50061 * 214.97999 * 21 19 18 35 35 H 1.08998 * 117.49978 * 0.02562 * 21 19 18 36 36 H 1.07999 * 119.96521 * 179.97438 * 22 13 12 37 37 H 1.07997 * 120.03156 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6176 0.0000 4 1 2.4972 2.0463 -1.4000 5 1 1.4472 2.6526 0.7000 6 1 3.5472 1.4400 0.7001 7 6 2.0088 -1.2009 0.0005 8 1 1.4687 -2.1362 0.0005 9 8 3.3571 -1.2010 0.0011 10 6 3.9733 -2.4058 0.1081 11 6 5.3555 -2.4724 0.2252 12 6 5.9791 -3.6994 0.3388 13 6 5.2293 -4.8615 0.3260 14 6 5.9134 -6.1991 0.4444 15 8 6.2508 -6.6890 -0.8802 16 6 6.8705 -7.8777 -0.9506 17 8 7.1222 -8.4887 0.0609 18 6 7.2514 -8.4506 -2.2914 19 6 7.9382 -9.8031 -2.0917 20 6 9.3994 -9.9247 -2.5283 21 6 8.2981 -10.6044 -3.3444 22 6 3.8530 -4.7987 0.2042 23 6 3.2232 -3.5745 0.0955 24 1 -0.4849 0.8401 0.0004 25 1 5.9419 -1.5655 0.2316 26 1 7.0536 -3.7518 0.4337 27 1 6.8234 -6.0908 1.0345 28 1 5.2448 -6.9070 0.9342 29 1 6.3550 -8.5846 -2.8971 30 1 7.9334 -7.7677 -2.7978 31 1 7.6282 -10.3619 -1.2087 32 1 9.8715 -9.0412 -2.9581 33 1 10.0513 -10.5635 -1.9323 34 1 8.2255 -11.6904 -3.2853 35 1 8.0461 -10.1679 -4.3108 36 1 3.2703 -5.7079 0.1941 37 1 2.1485 -3.5262 0.0001 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733439196.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:29 Heat of formation + Delta-G solvation = -84.373363 kcal Electronic energy + Delta-G solvation = -19801.933321 eV Core-core repulsion = 16510.249093 eV Total energy + Delta-G solvation = -3291.684229 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.57669 -40.89251 -38.84755 -38.17915 -37.15525 -34.51527 -32.44325 -31.89038 -30.74329 -27.91181 -26.30030 -23.77803 -23.25856 -23.04105 -22.07374 -21.01150 -19.87927 -19.17714 -18.69814 -17.82586 -17.58071 -16.69705 -16.33671 -15.97417 -15.77754 -15.56163 -15.20836 -15.04183 -14.65566 -14.37616 -14.13302 -14.06183 -13.80401 -13.33923 -13.12638 -12.67888 -12.53625 -12.45411 -12.32792 -12.29807 -11.96187 -11.69567 -11.58203 -11.30855 -11.24701 -10.93411 -10.88835 -9.88038 -9.15841 -8.52072 -6.25525 0.37446 0.50950 1.21435 1.32343 1.35856 1.51985 1.81990 2.27074 2.74527 2.90963 2.99282 3.12948 3.66678 3.72984 3.88085 3.88716 4.02670 4.09536 4.13135 4.27334 4.33976 4.50358 4.54090 4.65026 4.69597 4.72190 4.82980 4.88646 5.05698 5.16616 5.26926 5.28760 5.30596 5.46837 5.54437 5.63739 5.74668 5.84503 6.14900 6.76123 6.81580 7.53136 8.59110 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.043214 B = 0.002742 C = 0.002726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.788056 B =10207.426753 C =10270.647023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.011 3.989 3 Si 0.971 3.029 4 H -0.265 1.265 5 H -0.268 1.268 6 H -0.261 1.261 7 C -0.402 4.402 8 H 0.083 0.917 9 O -0.239 6.239 10 C 0.132 3.868 11 C -0.192 4.192 12 C -0.043 4.043 13 C -0.174 4.174 14 C 0.128 3.872 15 O -0.360 6.360 16 C 0.461 3.539 17 O -0.541 6.541 18 C -0.079 4.079 19 C -0.167 4.167 20 C -0.181 4.181 21 C -0.162 4.162 22 C -0.048 4.048 23 C -0.239 4.239 24 H 0.286 0.714 25 H 0.136 0.864 26 H 0.156 0.844 27 H 0.087 0.913 28 H 0.078 0.922 29 H 0.127 0.873 30 H 0.126 0.874 31 H 0.098 0.902 32 H 0.106 0.894 33 H 0.095 0.905 34 H 0.102 0.898 35 H 0.111 0.889 36 H 0.136 0.864 37 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.328 -16.331 -5.200 24.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.188 4.188 3 Si 0.793 3.207 4 H -0.190 1.190 5 H -0.193 1.193 6 H -0.185 1.185 7 C -0.478 4.478 8 H 0.101 0.899 9 O -0.146 6.146 10 C 0.083 3.917 11 C -0.211 4.211 12 C -0.061 4.061 13 C -0.174 4.174 14 C 0.055 3.945 15 O -0.277 6.277 16 C 0.306 3.694 17 O -0.431 6.431 18 C -0.116 4.116 19 C -0.185 4.185 20 C -0.218 4.218 21 C -0.199 4.199 22 C -0.066 4.066 23 C -0.259 4.259 24 H 0.095 0.905 25 H 0.154 0.846 26 H 0.174 0.826 27 H 0.105 0.895 28 H 0.096 0.904 29 H 0.145 0.855 30 H 0.144 0.856 31 H 0.116 0.884 32 H 0.124 0.876 33 H 0.113 0.887 34 H 0.121 0.879 35 H 0.130 0.870 36 H 0.153 0.847 37 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 17.272 -16.139 -4.891 24.139 hybrid contribution -0.653 0.624 0.369 0.976 sum 16.618 -15.514 -4.521 23.180 Atomic orbital electron populations 1.69728 1.06949 1.29725 1.49660 1.25308 0.95893 1.02253 0.95340 0.85205 0.78837 0.77276 0.79356 1.18984 1.19297 1.18511 1.20730 0.77982 0.96239 1.52859 0.89943 1.83520 1.21373 1.27355 1.82333 1.19740 0.93258 0.85085 0.93655 1.20518 0.90569 0.99755 1.10304 1.20968 1.00402 0.89934 0.94760 1.19314 0.93120 0.93870 1.11120 1.21652 0.99866 0.91779 0.81214 1.86624 1.69881 1.35964 1.35195 1.24321 0.73238 0.78495 0.93340 1.90632 1.52636 1.60725 1.39157 1.21060 1.04175 0.95790 0.90550 1.22041 0.99226 0.96831 1.00445 1.23179 0.90999 1.03872 1.03714 1.23109 1.01991 0.99677 0.95117 1.20937 0.94333 0.96545 0.94832 1.21269 1.00479 0.92907 1.11213 0.90474 0.84635 0.82624 0.89514 0.90413 0.85525 0.85611 0.88372 0.87614 0.88675 0.87921 0.87030 0.84661 0.86891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.35 13.96 21.61 0.30 -54.04 16 2 C 0.01 0.63 5.49 84.83 0.47 1.09 16 3 Si 0.97 44.60 28.62 68.60 1.96 46.57 16 4 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 5 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 6 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 7 C -0.40 -23.32 9.95 67.92 0.68 -22.65 16 8 H 0.08 5.01 5.44 -2.91 -0.02 4.99 16 9 O -0.24 -12.70 8.59 -22.72 -0.20 -12.90 16 10 C 0.13 6.05 6.65 22.58 0.15 6.20 16 11 C -0.19 -7.08 9.99 22.39 0.22 -6.86 16 12 C -0.04 -1.28 9.69 22.25 0.22 -1.07 16 13 C -0.17 -5.27 5.52 -19.83 -0.11 -5.38 16 14 C 0.13 3.24 5.59 71.24 0.40 3.64 16 15 O -0.36 -9.06 10.20 -51.44 -0.52 -9.58 16 16 C 0.46 10.46 7.96 71.24 0.57 11.02 16 17 O -0.54 -15.24 15.31 21.98 0.34 -14.91 16 18 C -0.08 -1.14 6.09 29.85 0.18 -0.96 16 19 C -0.17 -2.48 5.41 -10.80 -0.06 -2.53 16 20 C -0.18 -2.16 10.18 30.59 0.31 -1.85 16 21 C -0.16 -1.66 10.25 30.59 0.31 -1.34 16 22 C -0.05 -1.67 9.69 22.25 0.22 -1.45 16 23 C -0.24 -10.33 9.17 22.39 0.21 -10.13 16 24 H 0.29 15.44 8.31 -92.71 -0.77 14.67 16 25 H 0.14 4.52 8.06 -2.91 -0.02 4.49 16 26 H 0.16 3.47 8.06 -2.91 -0.02 3.44 16 27 H 0.09 1.98 8.08 -2.39 -0.02 1.96 16 28 H 0.08 1.91 8.08 -2.39 -0.02 1.89 16 29 H 0.13 1.42 8.14 -2.38 -0.02 1.40 16 30 H 0.13 1.34 7.88 -2.39 -0.02 1.33 16 31 H 0.10 1.88 7.31 -2.39 -0.02 1.86 16 32 H 0.11 1.05 8.03 -2.39 -0.02 1.03 16 33 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.14 3.97 8.06 -2.91 -0.02 3.94 16 37 H 0.11 5.34 5.64 -2.91 -0.02 5.33 16 Total: -1.00 -67.70 325.13 6.71 -60.98 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: 1.08 Total: 16.16 kcal Atomic # 6 Polarization: -36.03 SS G_CDS: 3.76 Total: -32.27 kcal Atomic # 7 Polarization: -54.35 SS G_CDS: 0.30 Total: -54.04 kcal Atomic # 8 Polarization: -37.00 SS G_CDS: -0.38 Total: -37.39 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 1.96 Total: 46.57 kcal Total: -67.70 6.71 -60.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733439196.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.391 kcal (2) G-P(sol) polarization free energy of solvation -67.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds