Wall clock time and date at job start Mon Mar 30 2020 01:54:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50699 * 119.99669 * 2 1 4 4 C 1.53006 * 109.46884 * 124.99899 * 3 2 1 5 5 C 1.50699 * 109.46884 * 179.97438 * 4 3 2 6 6 O 1.20821 * 120.00185 * 359.97438 * 5 4 3 7 7 O 1.34231 * 120.00087 * 180.02562 * 5 4 3 8 8 C 1.45196 * 117.00047 * 179.97438 * 7 5 4 9 9 C 1.50706 * 109.47037 * 179.97438 * 8 7 5 10 10 C 1.38294 * 119.93130 * 269.73094 * 9 8 7 11 11 C 1.38099 * 120.07055 * 179.72623 * 10 9 8 12 12 C 1.38885 * 119.92916 * 0.56465 * 11 10 9 13 13 O 1.35746 * 120.07221 * 179.68553 * 12 11 10 14 14 C 1.34828 * 117.00240 * 174.48968 * 13 12 11 15 15 H 1.08006 * 120.00054 * 5.05118 * 14 13 12 16 16 C 1.38655 * 120.00332 * 185.05591 * 14 13 12 17 17 N 1.31553 * 119.99844 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00136 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47105 * 60.00000 * 18 16 14 20 20 H 1.48499 * 109.47036 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47062 * 300.00069 * 18 16 14 22 22 C 1.38888 * 119.85809 * 359.70827 * 12 11 10 23 23 C 1.38097 * 119.93011 * 359.97438 * 22 12 11 24 24 H 1.07998 * 119.99259 * 180.02562 * 1 2 3 25 25 H 1.08001 * 120.00064 * 359.97438 * 1 2 3 26 26 H 1.08001 * 120.00064 * 180.02562 * 2 1 3 27 27 H 1.09001 * 109.47132 * 5.00004 * 3 2 1 28 28 H 1.08996 * 109.46999 * 244.99951 * 3 2 1 29 29 H 1.09001 * 109.47150 * 60.00116 * 4 3 2 30 30 H 1.08996 * 109.47345 * 299.99840 * 4 3 2 31 31 H 1.08996 * 109.47566 * 299.99750 * 8 7 5 32 32 H 1.09002 * 109.47418 * 60.00155 * 8 7 5 33 33 H 1.08001 * 119.96614 * 359.97036 * 10 9 8 34 34 H 1.08000 * 120.04137 * 180.26759 * 11 10 9 35 35 H 0.97003 * 120.00423 * 179.97438 * 17 16 14 36 36 H 1.08002 * 120.03290 * 179.97438 * 22 12 11 37 37 H 1.07997 * 119.96090 * 180.02562 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1817 5 6 3.7889 2.6380 1.1813 6 8 3.5718 3.4609 0.3237 7 8 4.7023 2.8857 2.1332 8 6 5.3903 4.1627 2.0703 9 6 6.3700 4.2623 3.2111 10 6 5.9701 4.8047 4.4188 11 6 6.8639 4.8922 5.4679 12 6 8.1689 4.4454 5.3055 13 8 9.0516 4.5358 6.3328 14 6 10.2663 3.9811 6.1468 15 1 10.5285 3.5651 5.1851 16 6 11.1789 3.9443 7.1900 17 7 10.8597 4.4513 8.3612 18 14 12.8615 3.1751 6.9324 19 1 13.5784 3.9021 5.8542 20 1 13.6430 3.2608 8.1922 21 1 12.7005 1.7502 6.5463 22 6 8.5689 3.9063 4.0896 23 6 7.6685 3.8156 3.0465 24 1 -0.5399 -0.9354 0.0004 25 1 -0.5400 0.9353 0.0004 26 1 1.8501 -0.9353 -0.0004 27 1 1.3585 2.1316 0.0896 28 1 2.6212 1.4026 -0.9313 29 1 3.7400 0.5066 1.0921 30 1 2.4772 1.2356 2.1130 31 1 5.9251 4.2411 1.1238 32 1 4.6631 4.9713 2.1448 33 1 4.9567 5.1568 4.5428 34 1 6.5499 5.3119 6.4121 35 1 11.4980 4.4253 9.0912 36 1 9.5831 3.5584 3.9601 37 1 7.9789 3.3961 2.1010 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733479285.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:35 Heat of formation + Delta-G solvation = -80.346156 kcal Electronic energy + Delta-G solvation = -19650.514281 eV Core-core repulsion = 16359.004685 eV Total energy + Delta-G solvation = -3291.509596 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.44559 -39.09067 -37.16425 -36.20844 -35.54263 -32.45613 -31.38410 -30.39869 -30.21033 -26.32914 -25.32343 -24.27899 -22.06837 -20.85598 -20.55350 -20.12297 -18.09041 -17.57925 -17.16331 -16.63686 -16.30278 -15.51782 -14.82583 -14.66638 -14.40262 -14.17948 -13.71256 -13.64225 -13.35969 -12.95026 -12.79746 -12.68613 -12.33239 -12.22841 -11.73633 -11.45245 -11.40193 -11.34873 -11.03838 -10.83000 -10.72527 -10.52582 -10.43690 -10.42274 -9.69826 -9.42460 -8.91112 -8.27701 -7.33984 -6.52973 -4.11748 1.85099 2.01409 2.14564 2.21292 2.98552 3.09285 3.12627 3.13374 3.90595 4.41146 4.56108 4.61462 4.77203 4.97250 4.99749 5.07035 5.15467 5.20318 5.24232 5.27297 5.48636 5.60907 5.63775 5.65231 5.76206 5.79974 6.12158 6.27676 6.32470 6.41308 6.55416 6.59129 6.80134 6.96033 7.14199 7.26184 7.34692 7.70790 7.80094 7.91620 8.92067 9.59949 10.64378 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.033291 B = 0.002698 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.876028 B =10377.201286 C =10641.015756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.155 4.155 3 C -0.084 4.084 4 C -0.112 4.112 5 C 0.457 3.543 6 O -0.518 6.518 7 O -0.351 6.351 8 C 0.129 3.871 9 C -0.205 4.205 10 C -0.049 4.049 11 C -0.196 4.196 12 C 0.163 3.837 13 O -0.171 6.171 14 C -0.394 4.394 15 H 0.093 0.907 16 C 0.040 3.960 17 N -0.859 5.859 18 Si 0.943 3.057 19 H -0.269 1.269 20 H -0.277 1.277 21 H -0.269 1.269 22 C -0.238 4.238 23 C -0.045 4.045 24 H 0.098 0.902 25 H 0.097 0.903 26 H 0.111 0.889 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.106 0.894 30 H 0.106 0.894 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.113 0.887 34 H 0.120 0.880 35 H 0.272 0.728 36 H 0.130 0.870 37 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.610 -6.647 -12.945 19.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.173 4.173 3 C -0.121 4.121 4 C -0.149 4.149 5 C 0.300 3.700 6 O -0.408 6.408 7 O -0.268 6.268 8 C 0.057 3.943 9 C -0.206 4.206 10 C -0.067 4.067 11 C -0.215 4.215 12 C 0.108 3.892 13 O -0.074 6.074 14 C -0.470 4.470 15 H 0.111 0.889 16 C -0.165 4.165 17 N -0.493 5.493 18 Si 0.767 3.233 19 H -0.194 1.194 20 H -0.202 1.202 21 H -0.194 1.194 22 C -0.257 4.257 23 C -0.063 4.063 24 H 0.116 0.884 25 H 0.115 0.885 26 H 0.129 0.871 27 H 0.094 0.906 28 H 0.100 0.900 29 H 0.124 0.876 30 H 0.124 0.876 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.131 0.869 34 H 0.138 0.862 35 H 0.082 0.918 36 H 0.147 0.853 37 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -13.523 -6.225 -12.698 19.567 hybrid contribution 0.914 -0.324 -0.188 0.988 sum -12.609 -6.549 -12.886 19.181 Atomic orbital electron populations 1.23903 0.95955 1.01996 1.00890 1.22926 0.96084 0.98201 1.00087 1.20586 0.97810 0.95861 0.97834 1.21356 0.98451 0.93350 1.01775 1.23728 0.78058 0.89276 0.78894 1.90644 1.64563 1.48119 1.37435 1.86662 1.49515 1.40562 1.50055 1.21698 0.92985 0.81956 0.97688 1.18872 0.94180 1.11828 0.95695 1.20505 0.97878 0.96738 0.91594 1.20198 0.91721 1.09628 0.99962 1.19443 0.89854 0.91873 0.88047 1.83975 1.22454 1.66323 1.34637 1.21323 0.87942 1.38499 0.99235 0.88927 1.25327 0.99841 0.96955 0.94343 1.70025 1.36052 1.41434 1.01791 0.85752 0.79928 0.79451 0.78160 1.19416 1.20203 1.19402 1.21142 1.01133 1.09629 0.93805 1.20615 0.92450 0.95698 0.97569 0.88369 0.88479 0.87054 0.90558 0.90021 0.87565 0.87595 0.91262 0.91234 0.86902 0.86195 0.91801 0.85263 0.87340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.25 14.32 29.01 0.42 -0.84 16 2 C -0.15 -1.08 9.52 -36.03 -0.34 -1.42 16 3 C -0.08 -0.69 4.95 -27.88 -0.14 -0.83 16 4 C -0.11 -0.98 5.79 -27.88 -0.16 -1.14 16 5 C 0.46 5.88 7.96 36.00 0.29 6.16 16 6 O -0.52 -7.87 15.73 -18.75 -0.29 -8.16 16 7 O -0.35 -5.17 10.20 -39.26 -0.40 -5.57 16 8 C 0.13 1.93 5.59 36.01 0.20 2.14 16 9 C -0.20 -3.57 5.52 -104.58 -0.58 -4.14 16 10 C -0.05 -0.87 9.69 -39.61 -0.38 -1.25 16 11 C -0.20 -4.07 9.99 -39.39 -0.39 -4.46 16 12 C 0.16 3.87 6.65 -39.10 -0.26 3.61 16 13 O -0.17 -4.80 9.76 0.06 0.00 -4.80 16 14 C -0.39 -10.79 9.49 30.89 0.29 -10.50 16 15 H 0.09 2.33 5.20 -52.48 -0.27 2.06 16 16 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 17 N -0.86 -24.72 13.67 55.48 0.76 -23.97 16 18 Si 0.94 20.07 29.55 -169.99 -5.02 15.05 16 19 H -0.27 -5.55 7.11 56.52 0.40 -5.14 16 20 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 21 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 22 C -0.24 -5.08 9.17 -39.39 -0.36 -5.44 16 23 C -0.04 -0.82 9.69 -39.61 -0.38 -1.21 16 24 H 0.10 0.53 8.06 -52.49 -0.42 0.11 16 25 H 0.10 0.62 7.84 -52.49 -0.41 0.21 16 26 H 0.11 0.65 8.06 -52.49 -0.42 0.23 16 27 H 0.08 0.68 7.75 -51.93 -0.40 0.28 16 28 H 0.08 0.72 8.10 -51.93 -0.42 0.30 16 29 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.11 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.07 0.98 8.08 -51.93 -0.42 0.56 16 32 H 0.07 0.98 8.07 -51.93 -0.42 0.56 16 33 H 0.11 1.69 8.06 -52.49 -0.42 1.26 16 34 H 0.12 2.38 8.06 -52.49 -0.42 1.96 16 35 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 36 H 0.13 2.73 5.64 -52.49 -0.30 2.44 16 37 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 LS Contribution 329.62 15.07 4.97 4.97 Total: -1.00 -31.04 329.62 -6.63 -37.67 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -4.74 Total: 3.15 kcal Atomic # 6 Polarization: -16.44 SS G_CDS: -1.90 Total: -18.34 kcal Atomic # 7 Polarization: -24.72 SS G_CDS: 0.76 Total: -23.97 kcal Atomic # 8 Polarization: -17.84 SS G_CDS: -0.69 Total: -18.53 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.04 -6.63 -37.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733479285.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.677 kcal (2) G-P(sol) polarization free energy of solvation -31.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds