Wall clock time and date at job start Mon Mar 30 2020 01:54:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50699 * 119.99669 * 2 1 4 4 C 1.53006 * 109.46884 * 124.99899 * 3 2 1 5 5 C 1.50699 * 109.46884 * 179.97438 * 4 3 2 6 6 O 1.20821 * 120.00185 * 359.97438 * 5 4 3 7 7 O 1.34231 * 120.00087 * 180.02562 * 5 4 3 8 8 C 1.45196 * 117.00047 * 179.97438 * 7 5 4 9 9 C 1.50706 * 109.47037 * 179.97438 * 8 7 5 10 10 C 1.38294 * 119.93130 * 269.73094 * 9 8 7 11 11 C 1.38099 * 120.07055 * 179.72623 * 10 9 8 12 12 C 1.38885 * 119.92916 * 0.56465 * 11 10 9 13 13 O 1.35746 * 120.07221 * 179.68553 * 12 11 10 14 14 C 1.34828 * 117.00240 * 174.48968 * 13 12 11 15 15 H 1.08006 * 120.00054 * 5.05118 * 14 13 12 16 16 C 1.38655 * 120.00332 * 185.05591 * 14 13 12 17 17 N 1.31553 * 119.99844 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00136 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47105 * 60.00000 * 18 16 14 20 20 H 1.48499 * 109.47036 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47062 * 300.00069 * 18 16 14 22 22 C 1.38888 * 119.85809 * 359.70827 * 12 11 10 23 23 C 1.38097 * 119.93011 * 359.97438 * 22 12 11 24 24 H 1.07998 * 119.99259 * 180.02562 * 1 2 3 25 25 H 1.08001 * 120.00064 * 359.97438 * 1 2 3 26 26 H 1.08001 * 120.00064 * 180.02562 * 2 1 3 27 27 H 1.09001 * 109.47132 * 5.00004 * 3 2 1 28 28 H 1.08996 * 109.46999 * 244.99951 * 3 2 1 29 29 H 1.09001 * 109.47150 * 60.00116 * 4 3 2 30 30 H 1.08996 * 109.47345 * 299.99840 * 4 3 2 31 31 H 1.08996 * 109.47566 * 299.99750 * 8 7 5 32 32 H 1.09002 * 109.47418 * 60.00155 * 8 7 5 33 33 H 1.08001 * 119.96614 * 359.97036 * 10 9 8 34 34 H 1.08000 * 120.04137 * 180.26759 * 11 10 9 35 35 H 0.97003 * 120.00423 * 179.97438 * 17 16 14 36 36 H 1.08002 * 120.03290 * 179.97438 * 22 12 11 37 37 H 1.07997 * 119.96090 * 180.02562 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1817 5 6 3.7889 2.6380 1.1813 6 8 3.5718 3.4609 0.3237 7 8 4.7023 2.8857 2.1332 8 6 5.3903 4.1627 2.0703 9 6 6.3700 4.2623 3.2111 10 6 5.9701 4.8047 4.4188 11 6 6.8639 4.8922 5.4679 12 6 8.1689 4.4454 5.3055 13 8 9.0516 4.5358 6.3328 14 6 10.2663 3.9811 6.1468 15 1 10.5285 3.5651 5.1851 16 6 11.1789 3.9443 7.1900 17 7 10.8597 4.4513 8.3612 18 14 12.8615 3.1751 6.9324 19 1 13.5784 3.9021 5.8542 20 1 13.6430 3.2608 8.1922 21 1 12.7005 1.7502 6.5463 22 6 8.5689 3.9063 4.0896 23 6 7.6685 3.8156 3.0465 24 1 -0.5399 -0.9354 0.0004 25 1 -0.5400 0.9353 0.0004 26 1 1.8501 -0.9353 -0.0004 27 1 1.3585 2.1316 0.0896 28 1 2.6212 1.4026 -0.9313 29 1 3.7400 0.5066 1.0921 30 1 2.4772 1.2356 2.1130 31 1 5.9251 4.2411 1.1238 32 1 4.6631 4.9713 2.1448 33 1 4.9567 5.1568 4.5428 34 1 6.5499 5.3119 6.4121 35 1 11.4980 4.4253 9.0912 36 1 9.5831 3.5584 3.9601 37 1 7.9789 3.3961 2.1010 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733479285.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:35 Heat of formation + Delta-G solvation = -97.115707 kcal Electronic energy + Delta-G solvation = -19651.241464 eV Core-core repulsion = 16359.004685 eV Total energy + Delta-G solvation = -3292.236778 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.54705 -40.77158 -38.63577 -37.46889 -36.28184 -34.37314 -32.40433 -31.87196 -31.52021 -27.88968 -26.82600 -25.32668 -23.69754 -22.26456 -21.68787 -20.67321 -19.90610 -18.92553 -18.58766 -17.67125 -17.50310 -16.48544 -16.32530 -16.07517 -15.84718 -15.57546 -15.24948 -14.90120 -14.55503 -14.32411 -14.09489 -13.80868 -13.54730 -13.37706 -13.12069 -13.02039 -12.59935 -12.44711 -12.23241 -12.15093 -12.07386 -11.91555 -11.66005 -11.50225 -11.21301 -10.81216 -10.23085 -9.85057 -9.06628 -8.49093 -6.17723 0.43364 0.54625 1.21424 1.35897 1.37473 1.46010 1.52101 1.92888 2.17156 2.81960 3.13757 3.45068 3.68503 3.88410 3.90764 3.96070 4.13083 4.14349 4.24801 4.29859 4.46260 4.49717 4.54227 4.65495 4.73126 4.89887 4.98101 5.07623 5.11348 5.18852 5.21706 5.43661 5.54795 5.65035 5.68105 5.78127 5.90932 5.99546 6.11164 6.76236 6.95118 7.72983 8.73321 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.033291 B = 0.002698 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.876028 B =10377.201286 C =10641.015756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.161 4.161 3 C -0.080 4.080 4 C -0.105 4.105 5 C 0.458 3.542 6 O -0.543 6.543 7 O -0.361 6.361 8 C 0.129 3.871 9 C -0.182 4.182 10 C -0.042 4.042 11 C -0.206 4.206 12 C 0.125 3.875 13 O -0.226 6.226 14 C -0.416 4.416 15 H 0.104 0.896 16 C -0.021 4.021 17 N -0.918 5.918 18 Si 1.019 2.981 19 H -0.257 1.257 20 H -0.272 1.272 21 H -0.257 1.257 22 C -0.245 4.245 23 C -0.044 4.044 24 H 0.111 0.889 25 H 0.095 0.905 26 H 0.125 0.875 27 H 0.065 0.935 28 H 0.074 0.926 29 H 0.127 0.873 30 H 0.122 0.878 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.149 0.851 34 H 0.119 0.881 35 H 0.274 0.726 36 H 0.125 0.875 37 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.897 -8.119 -15.362 22.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.178 4.178 3 C -0.118 4.118 4 C -0.142 4.142 5 C 0.303 3.697 6 O -0.434 6.434 7 O -0.278 6.278 8 C 0.057 3.943 9 C -0.183 4.183 10 C -0.060 4.060 11 C -0.225 4.225 12 C 0.074 3.926 13 O -0.132 6.132 14 C -0.492 4.492 15 H 0.121 0.879 16 C -0.219 4.219 17 N -0.555 5.555 18 Si 0.838 3.162 19 H -0.181 1.181 20 H -0.197 1.197 21 H -0.181 1.181 22 C -0.264 4.264 23 C -0.062 4.062 24 H 0.129 0.871 25 H 0.114 0.886 26 H 0.143 0.857 27 H 0.084 0.916 28 H 0.092 0.908 29 H 0.145 0.855 30 H 0.140 0.860 31 H 0.099 0.901 32 H 0.101 0.899 33 H 0.167 0.833 34 H 0.138 0.862 35 H 0.083 0.917 36 H 0.143 0.857 37 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -14.862 -7.704 -15.166 22.588 hybrid contribution 0.944 0.152 0.293 1.001 sum -13.917 -7.552 -14.873 21.724 Atomic orbital electron populations 1.24072 0.96042 1.02614 1.00127 1.22946 0.96195 0.97986 1.00712 1.20538 0.97523 0.96382 0.97331 1.21489 0.98562 0.91510 1.02681 1.24480 0.77262 0.90161 0.77781 1.90642 1.65200 1.49249 1.38288 1.86636 1.50150 1.39999 1.50965 1.21637 0.93010 0.82902 0.96783 1.19270 0.94388 1.08621 0.96031 1.20898 0.98864 0.95544 0.90693 1.20453 0.91281 1.09576 1.01188 1.20001 0.90644 0.93553 0.88433 1.83948 1.23425 1.69004 1.36796 1.21819 0.88423 1.38926 1.00064 0.87853 1.26617 1.04182 0.97357 0.93791 1.70172 1.37902 1.44388 1.03061 0.84638 0.74236 0.78855 0.78449 1.18104 1.19669 1.18105 1.21255 1.01689 1.09573 0.93910 1.20962 0.92275 0.95005 0.97924 0.87102 0.88647 0.85675 0.91582 0.90775 0.85517 0.85991 0.90071 0.89892 0.83295 0.86249 0.91719 0.85749 0.84065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.07 14.32 67.78 0.97 -1.10 16 2 C -0.16 -1.81 9.52 25.64 0.24 -1.57 16 3 C -0.08 -1.14 4.95 29.85 0.15 -1.00 16 4 C -0.11 -1.51 5.79 29.85 0.17 -1.33 16 5 C 0.46 10.39 7.96 71.24 0.57 10.95 16 6 O -0.54 -15.13 15.73 21.98 0.35 -14.79 16 7 O -0.36 -9.32 10.20 -51.43 -0.52 -9.85 16 8 C 0.13 3.38 5.59 71.24 0.40 3.78 16 9 C -0.18 -5.79 5.52 -19.83 -0.11 -5.90 16 10 C -0.04 -1.40 9.69 22.25 0.22 -1.18 16 11 C -0.21 -8.59 9.99 22.39 0.22 -8.37 16 12 C 0.12 6.12 6.65 22.58 0.15 6.27 16 13 O -0.23 -13.38 9.76 -22.68 -0.22 -13.60 16 14 C -0.42 -23.84 9.49 67.92 0.64 -23.20 16 15 H 0.10 5.39 5.20 -2.91 -0.02 5.37 16 16 C -0.02 -1.20 5.49 84.83 0.47 -0.73 16 17 N -0.92 -55.59 13.67 21.61 0.30 -55.29 16 18 Si 1.02 42.02 29.55 68.60 2.03 44.05 16 19 H -0.26 -9.92 7.11 99.48 0.71 -9.22 16 20 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 21 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 22 C -0.25 -10.46 9.17 22.39 0.21 -10.25 16 23 C -0.04 -1.50 9.69 22.25 0.22 -1.28 16 24 H 0.11 0.91 8.06 -2.91 -0.02 0.89 16 25 H 0.10 1.04 7.84 -2.91 -0.02 1.02 16 26 H 0.13 1.06 8.06 -2.91 -0.02 1.04 16 27 H 0.07 1.07 7.75 -2.39 -0.02 1.05 16 28 H 0.07 1.16 8.10 -2.39 -0.02 1.14 16 29 H 0.13 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.08 1.98 8.08 -2.39 -0.02 1.96 16 32 H 0.08 2.00 8.07 -2.39 -0.02 1.98 16 33 H 0.15 3.89 8.06 -2.91 -0.02 3.87 16 34 H 0.12 4.88 8.06 -2.91 -0.02 4.86 16 35 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 36 H 0.12 5.34 5.64 -2.91 -0.02 5.32 16 37 H 0.14 3.91 8.06 -2.91 -0.02 3.88 16 Total: -1.00 -70.91 329.62 7.50 -63.41 By element: Atomic # 1 Polarization: 19.92 SS G_CDS: 1.06 Total: 20.99 kcal Atomic # 6 Polarization: -39.42 SS G_CDS: 4.51 Total: -34.91 kcal Atomic # 7 Polarization: -55.59 SS G_CDS: 0.30 Total: -55.29 kcal Atomic # 8 Polarization: -37.84 SS G_CDS: -0.40 Total: -38.24 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.05 kcal Total: -70.91 7.50 -63.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733479285.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.707 kcal (2) G-P(sol) polarization free energy of solvation -70.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds