Wall clock time and date at job start Mon Mar 30 2020 01:38:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00122 * 2 1 4 4 H 1.48496 * 109.47491 * 240.00002 * 3 2 1 5 5 H 1.48502 * 109.47136 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47335 * 119.99979 * 3 2 1 7 7 C 1.37879 * 120.00060 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99601 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99860 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.47156 * 179.97438 * 9 7 2 11 11 C 1.52991 * 109.47494 * 180.02562 * 10 9 7 12 12 O 1.45198 * 109.47640 * 180.02562 * 11 10 9 13 13 C 1.34227 * 117.00293 * 179.97438 * 12 11 10 14 14 O 1.20826 * 120.00097 * 0.02562 * 13 12 11 15 15 C 1.50704 * 119.99986 * 180.02562 * 13 12 11 16 16 H 1.08996 * 110.83248 * 303.71518 * 15 13 12 17 17 C 1.54709 * 110.96634 * 67.45091 * 15 13 12 18 18 O 1.43769 * 102.78834 * 92.86303 * 17 15 13 19 19 C 1.36142 * 109.24990 * 27.68746 * 18 17 15 20 20 C 1.39293 * 129.88068 * 161.39785 * 19 18 17 21 21 C 1.37926 * 120.23869 * 179.34319 * 20 19 18 22 22 C 1.38292 * 120.35299 * 0.04280 * 21 20 19 23 23 C 1.38355 * 119.76296 * 0.17321 * 22 21 20 24 24 C 1.37741 * 119.97850 * 359.90789 * 23 22 21 25 25 H 0.97003 * 119.99573 * 359.97438 * 1 2 3 26 26 H 1.09007 * 109.46971 * 60.00469 * 9 7 2 27 27 H 1.08997 * 109.47397 * 300.00342 * 9 7 2 28 28 H 1.09007 * 109.46723 * 60.00408 * 10 9 7 29 29 H 1.08997 * 109.47322 * 300.00480 * 10 9 7 30 30 H 1.09009 * 109.46755 * 59.99913 * 11 10 9 31 31 H 1.09009 * 109.47531 * 300.00860 * 11 10 9 32 32 H 1.08998 * 110.74656 * 211.18365 * 17 15 13 33 33 H 1.09000 * 110.75312 * 334.53980 * 17 15 13 34 34 H 1.07994 * 119.88238 * 359.36622 * 20 19 18 35 35 H 1.08002 * 119.82832 * 180.02562 * 21 20 19 36 36 H 1.07992 * 120.11916 * 180.44462 * 22 21 20 37 37 H 1.08002 * 120.00511 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 6 1.4804 -4.9870 -0.0025 12 8 2.4239 -6.0907 -0.0031 13 6 1.9109 -7.3311 -0.0032 14 8 0.7130 -7.4894 -0.0032 15 6 2.8289 -8.5262 -0.0032 16 1 3.5135 -8.4891 -0.8505 17 6 3.6054 -8.6278 1.3310 18 8 2.7718 -9.4943 2.1192 19 6 2.0722 -10.3186 1.2919 20 6 1.4249 -11.5208 1.5673 21 6 0.7554 -12.1943 0.5671 22 6 0.7211 -11.6835 -0.7175 23 6 1.3652 -10.4921 -1.0003 24 6 2.0358 -9.8187 -0.0033 25 1 -0.4850 0.8401 0.0004 26 1 0.6241 -2.5566 -0.8904 27 1 0.6247 -2.5571 0.8896 28 1 2.8726 -3.6047 0.8878 29 1 2.8713 -3.6039 -0.8922 30 1 0.8533 -5.0441 -0.8923 31 1 0.8540 -5.0455 0.8877 32 1 4.5869 -9.0749 1.1735 33 1 3.6969 -7.6483 1.8003 34 1 1.4471 -11.9269 2.5678 35 1 0.2555 -13.1258 0.7882 36 1 0.1897 -12.2103 -1.4962 37 1 1.3413 -10.0898 -2.0023 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733866990.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:55 Heat of formation + Delta-G solvation = -101.862858 kcal Electronic energy + Delta-G solvation = -20299.650068 eV Core-core repulsion = 17007.207438 eV Total energy + Delta-G solvation = -3292.442630 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.75138 -39.86151 -37.65277 -36.50704 -34.03993 -33.20117 -31.70747 -30.34959 -29.69677 -27.17004 -24.77817 -23.46793 -22.71179 -22.24422 -20.63367 -20.28480 -18.04664 -17.38036 -16.99250 -16.79955 -16.30545 -16.01164 -15.74715 -15.33056 -14.49753 -14.30506 -14.08078 -13.70722 -13.43320 -13.11350 -12.85180 -12.38351 -12.22009 -12.06549 -11.88765 -11.85115 -11.44934 -11.09402 -10.97158 -10.69505 -10.67283 -10.43101 -10.38979 -9.75858 -9.54750 -9.22027 -9.16665 -8.43808 -8.40251 -6.05047 -4.08446 0.96315 1.14607 2.18151 2.72527 2.97388 3.31234 3.35710 3.38022 3.53909 3.88258 4.16035 4.41644 4.52380 4.69872 4.80718 4.87253 5.06901 5.12312 5.17082 5.27735 5.30783 5.35238 5.53463 5.58037 5.72167 5.96927 6.04027 6.12623 6.22235 6.31616 6.42779 6.50003 6.78932 6.89465 6.94559 7.57694 7.68613 7.83870 7.92891 8.33637 8.97566 9.55900 11.06367 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.044136 B = 0.002848 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.249758 B = 9827.746824 C =10092.192931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.896 3.104 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.523 4.523 8 H 0.057 0.943 9 C 0.024 3.976 10 C -0.108 4.108 11 C 0.068 3.932 12 O -0.357 6.357 13 C 0.464 3.536 14 O -0.494 6.494 15 C -0.074 4.074 16 H 0.134 0.866 17 C 0.065 3.935 18 O -0.300 6.300 19 C 0.116 3.884 20 C -0.141 4.141 21 C -0.079 4.079 22 C -0.151 4.151 23 C -0.050 4.050 24 C -0.160 4.160 25 H 0.262 0.738 26 H 0.019 0.981 27 H 0.019 0.981 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.097 0.903 33 H 0.120 0.880 34 H 0.130 0.870 35 H 0.132 0.868 36 H 0.129 0.871 37 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.112 -24.504 -0.185 25.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.723 3.277 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.561 4.561 8 H 0.075 0.925 9 C -0.013 4.013 10 C -0.146 4.146 11 C -0.004 4.004 12 O -0.273 6.273 13 C 0.305 3.695 14 O -0.381 6.381 15 C -0.093 4.093 16 H 0.151 0.849 17 C -0.010 4.010 18 O -0.214 6.214 19 C 0.071 3.929 20 C -0.160 4.160 21 C -0.097 4.097 22 C -0.169 4.169 23 C -0.068 4.068 24 C -0.161 4.161 25 H 0.072 0.928 26 H 0.038 0.962 27 H 0.038 0.962 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.115 0.885 33 H 0.138 0.862 34 H 0.147 0.853 35 H 0.150 0.850 36 H 0.147 0.853 37 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 5.582 -24.347 0.065 24.979 hybrid contribution 0.245 1.178 -0.221 1.223 sum 5.827 -23.169 -0.155 23.891 Atomic orbital electron populations 1.69957 1.06103 1.26915 1.50365 1.25034 0.94884 0.99379 0.95155 0.86598 0.79528 0.82854 0.78671 1.20168 1.21246 1.20163 1.21126 0.93080 0.90669 1.51245 0.92461 1.19049 0.93830 0.90712 0.97704 1.21772 0.99950 0.90884 1.01990 1.23555 0.91202 0.83408 1.02280 1.86467 1.42792 1.14903 1.83168 1.23015 0.88317 0.84681 0.73490 1.90685 1.16594 1.86700 1.44098 1.21163 0.96597 0.89017 1.02544 0.84857 1.23864 0.93384 0.95903 0.87895 1.86876 1.55222 1.47169 1.32148 1.19577 0.93614 0.91188 0.88529 1.20250 1.02111 0.92755 1.00860 1.20911 0.97044 0.99335 0.92397 1.21032 1.01803 0.96864 0.97185 1.20321 0.94158 0.93915 0.98380 1.20167 1.05151 0.95504 0.95253 0.92800 0.96242 0.96218 0.92086 0.92097 0.91426 0.91435 0.88537 0.86197 0.85253 0.85007 0.85257 0.85656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.86 13.29 55.43 0.74 -26.12 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.52 -14.70 9.11 -34.44 -0.31 -15.01 16 8 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 9 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 10 C -0.11 -2.23 5.53 -26.73 -0.15 -2.37 16 11 C 0.07 1.26 5.47 37.15 0.20 1.47 16 12 O -0.36 -5.82 10.21 -39.25 -0.40 -6.22 16 13 C 0.46 7.18 7.20 36.01 0.26 7.44 16 14 O -0.49 -9.28 15.89 -18.75 -0.30 -9.57 16 15 C -0.07 -0.83 3.63 -91.56 -0.33 -1.17 16 16 H 0.13 1.09 8.14 -51.93 -0.42 0.67 16 17 C 0.06 0.63 7.54 38.06 0.29 0.92 16 18 O -0.30 -3.80 11.10 -20.19 -0.22 -4.02 16 19 C 0.12 1.43 7.04 -38.95 -0.27 1.16 16 20 C -0.14 -1.46 10.06 -39.30 -0.40 -1.85 16 21 C -0.08 -0.69 10.02 -39.68 -0.40 -1.08 16 22 C -0.15 -1.37 10.07 -39.52 -0.40 -1.76 16 23 C -0.05 -0.53 10.03 -39.72 -0.40 -0.93 16 24 C -0.16 -1.92 4.93 -104.10 -0.51 -2.43 16 25 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 26 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 30 H 0.07 1.26 8.14 -51.92 -0.42 0.84 16 31 H 0.07 1.28 8.13 -51.92 -0.42 0.85 16 32 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.12 1.13 7.90 -51.93 -0.41 0.72 16 34 H 0.13 1.10 8.06 -52.49 -0.42 0.67 16 35 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 36 H 0.13 0.85 8.06 -52.49 -0.42 0.42 16 37 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 LS Contribution 323.70 15.07 4.88 4.88 Total: -1.00 -33.29 323.70 -8.01 -41.30 By element: Atomic # 1 Polarization: 1.91 SS G_CDS: -5.02 Total: -3.12 kcal Atomic # 6 Polarization: -10.96 SS G_CDS: -2.66 Total: -13.62 kcal Atomic # 7 Polarization: -26.86 SS G_CDS: 0.74 Total: -26.12 kcal Atomic # 8 Polarization: -18.89 SS G_CDS: -0.92 Total: -19.82 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -33.29 -8.01 -41.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733866990.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.558 kcal (2) G-P(sol) polarization free energy of solvation -33.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds