Wall clock time and date at job start Mon Mar 30 2020 01:38:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00122 * 2 1 4 4 H 1.48496 * 109.47491 * 240.00002 * 3 2 1 5 5 H 1.48502 * 109.47136 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47335 * 119.99979 * 3 2 1 7 7 C 1.37879 * 120.00060 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99601 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99860 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.47156 * 179.97438 * 9 7 2 11 11 C 1.52991 * 109.47494 * 180.02562 * 10 9 7 12 12 O 1.45198 * 109.47640 * 180.02562 * 11 10 9 13 13 C 1.34227 * 117.00293 * 179.97438 * 12 11 10 14 14 O 1.20826 * 120.00097 * 0.02562 * 13 12 11 15 15 C 1.50704 * 119.99986 * 180.02562 * 13 12 11 16 16 H 1.08996 * 110.83248 * 303.71518 * 15 13 12 17 17 C 1.54709 * 110.96634 * 67.45091 * 15 13 12 18 18 O 1.43769 * 102.78834 * 92.86303 * 17 15 13 19 19 C 1.36142 * 109.24990 * 27.68746 * 18 17 15 20 20 C 1.39293 * 129.88068 * 161.39785 * 19 18 17 21 21 C 1.37926 * 120.23869 * 179.34319 * 20 19 18 22 22 C 1.38292 * 120.35299 * 0.04280 * 21 20 19 23 23 C 1.38355 * 119.76296 * 0.17321 * 22 21 20 24 24 C 1.37741 * 119.97850 * 359.90789 * 23 22 21 25 25 H 0.97003 * 119.99573 * 359.97438 * 1 2 3 26 26 H 1.09007 * 109.46971 * 60.00469 * 9 7 2 27 27 H 1.08997 * 109.47397 * 300.00342 * 9 7 2 28 28 H 1.09007 * 109.46723 * 60.00408 * 10 9 7 29 29 H 1.08997 * 109.47322 * 300.00480 * 10 9 7 30 30 H 1.09009 * 109.46755 * 59.99913 * 11 10 9 31 31 H 1.09009 * 109.47531 * 300.00860 * 11 10 9 32 32 H 1.08998 * 110.74656 * 211.18365 * 17 15 13 33 33 H 1.09000 * 110.75312 * 334.53980 * 17 15 13 34 34 H 1.07994 * 119.88238 * 359.36622 * 20 19 18 35 35 H 1.08002 * 119.82832 * 180.02562 * 21 20 19 36 36 H 1.07992 * 120.11916 * 180.44462 * 22 21 20 37 37 H 1.08002 * 120.00511 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 6 1.4804 -4.9870 -0.0025 12 8 2.4239 -6.0907 -0.0031 13 6 1.9109 -7.3311 -0.0032 14 8 0.7130 -7.4894 -0.0032 15 6 2.8289 -8.5262 -0.0032 16 1 3.5135 -8.4891 -0.8505 17 6 3.6054 -8.6278 1.3310 18 8 2.7718 -9.4943 2.1192 19 6 2.0722 -10.3186 1.2919 20 6 1.4249 -11.5208 1.5673 21 6 0.7554 -12.1943 0.5671 22 6 0.7211 -11.6835 -0.7175 23 6 1.3652 -10.4921 -1.0003 24 6 2.0358 -9.8187 -0.0033 25 1 -0.4850 0.8401 0.0004 26 1 0.6241 -2.5566 -0.8904 27 1 0.6247 -2.5571 0.8896 28 1 2.8726 -3.6047 0.8878 29 1 2.8713 -3.6039 -0.8922 30 1 0.8533 -5.0441 -0.8923 31 1 0.8540 -5.0455 0.8877 32 1 4.5869 -9.0749 1.1735 33 1 3.6969 -7.6483 1.8003 34 1 1.4471 -11.9269 2.5678 35 1 0.2555 -13.1258 0.7882 36 1 0.1897 -12.2103 -1.4962 37 1 1.3413 -10.0898 -2.0023 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733866990.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:55 Heat of formation + Delta-G solvation = -120.856237 kcal Electronic energy + Delta-G solvation = -20300.473683 eV Core-core repulsion = 17007.207438 eV Total energy + Delta-G solvation = -3293.266245 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.65894 -41.07466 -38.40147 -37.90779 -35.96812 -34.17514 -33.59343 -31.11537 -30.50690 -29.00941 -26.00745 -24.88402 -23.72497 -23.09975 -22.20832 -21.61916 -19.12838 -18.66627 -18.25994 -17.99248 -17.62364 -17.27031 -16.56410 -16.46663 -16.39804 -15.63091 -15.07300 -14.68916 -14.48415 -14.16437 -14.09370 -13.95244 -13.72541 -13.57207 -12.90627 -12.79075 -12.70329 -12.54786 -12.46838 -12.28395 -12.11611 -11.86676 -11.71679 -11.46360 -11.42939 -11.25991 -10.58027 -9.95566 -9.22558 -8.22819 -6.34785 0.17990 0.38086 0.97417 1.40880 1.44451 1.51231 1.54928 2.20798 2.40608 2.74485 3.03181 3.11101 3.37376 3.61710 3.79011 3.94628 4.01030 4.12112 4.19305 4.30836 4.37088 4.44120 4.47656 4.54691 4.62899 4.76473 4.82170 5.00731 5.05077 5.30956 5.33918 5.38617 5.47886 5.50775 5.60687 5.61205 5.78382 6.13264 6.17136 6.56344 6.81176 7.34972 8.89309 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.044136 B = 0.002848 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.249758 B = 9827.746824 C =10092.192931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.002 4.002 3 Si 0.970 3.030 4 H -0.264 1.264 5 H -0.285 1.285 6 H -0.265 1.265 7 C -0.544 4.544 8 H 0.067 0.933 9 C 0.025 3.975 10 C -0.092 4.092 11 C 0.078 3.922 12 O -0.350 6.350 13 C 0.463 3.537 14 O -0.532 6.532 15 C -0.068 4.068 16 H 0.167 0.833 17 C 0.063 3.937 18 O -0.323 6.323 19 C 0.090 3.910 20 C -0.153 4.153 21 C -0.075 4.075 22 C -0.152 4.152 23 C -0.066 4.066 24 C -0.181 4.181 25 H 0.265 0.735 26 H -0.004 1.004 27 H -0.005 1.005 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.134 0.866 33 H 0.119 0.881 34 H 0.142 0.858 35 H 0.164 0.836 36 H 0.156 0.844 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.746 -25.562 -0.555 26.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.200 4.200 3 Si 0.794 3.206 4 H -0.189 1.189 5 H -0.210 1.210 6 H -0.190 1.190 7 C -0.582 4.582 8 H 0.085 0.915 9 C -0.012 4.012 10 C -0.130 4.130 11 C 0.004 3.996 12 O -0.266 6.266 13 C 0.306 3.694 14 O -0.421 6.421 15 C -0.087 4.087 16 H 0.185 0.815 17 C -0.011 4.011 18 O -0.238 6.238 19 C 0.045 3.955 20 C -0.172 4.172 21 C -0.093 4.093 22 C -0.169 4.169 23 C -0.084 4.084 24 C -0.182 4.182 25 H 0.073 0.927 26 H 0.014 0.986 27 H 0.013 0.987 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.151 0.849 33 H 0.137 0.863 34 H 0.160 0.840 35 H 0.182 0.818 36 H 0.174 0.826 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 7.244 -25.425 -0.306 26.439 hybrid contribution -0.325 1.394 -0.108 1.435 sum 6.919 -24.031 -0.415 25.011 Atomic orbital electron populations 1.70100 1.07957 1.28030 1.51387 1.26033 0.95784 1.03609 0.94551 0.85430 0.78184 0.77669 0.79351 1.18916 1.21004 1.18997 1.21598 0.93813 0.91785 1.50998 0.91475 1.18935 0.94292 0.92591 0.95358 1.21457 0.98693 0.90012 1.02813 1.23166 0.91022 0.83709 1.01679 1.86458 1.41832 1.15040 1.83314 1.23994 0.88644 0.84951 0.71792 1.90667 1.18521 1.86987 1.45920 1.21340 0.96193 0.86440 1.04720 0.81546 1.24114 0.94328 0.96049 0.86628 1.86826 1.55936 1.47750 1.33244 1.19925 0.94663 0.92142 0.88787 1.20625 1.01972 0.92489 1.02096 1.21337 0.96039 1.00106 0.91822 1.21434 1.01044 0.96323 0.98145 1.20635 0.94335 0.94671 0.98722 1.20366 1.06275 0.95922 0.95647 0.92668 0.98570 0.98698 0.91239 0.91110 0.91918 0.92334 0.84855 0.86259 0.83989 0.81811 0.82627 0.84767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.15 13.29 21.45 0.28 -56.87 16 2 C 0.00 -0.11 5.46 84.66 0.46 0.35 16 3 Si 0.97 43.87 29.54 68.60 2.03 45.89 16 4 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 5 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 6 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 7 C -0.54 -30.71 9.11 25.60 0.23 -30.48 16 8 H 0.07 3.57 7.74 -2.91 -0.02 3.54 16 9 C 0.03 1.34 4.97 29.85 0.15 1.49 16 10 C -0.09 -3.79 5.53 30.59 0.17 -3.62 16 11 C 0.08 2.91 5.47 71.98 0.39 3.30 16 12 O -0.35 -11.22 10.21 -51.39 -0.52 -11.74 16 13 C 0.46 14.17 7.20 71.24 0.51 14.68 16 14 O -0.53 -20.30 15.89 21.96 0.35 -19.95 16 15 C -0.07 -1.45 3.63 -11.40 -0.04 -1.49 16 16 H 0.17 2.31 8.14 -2.39 -0.02 2.29 16 17 C 0.06 1.14 7.54 72.56 0.55 1.69 16 18 O -0.32 -8.01 11.10 -95.16 -1.06 -9.06 16 19 C 0.09 2.16 7.04 22.68 0.16 2.32 16 20 C -0.15 -2.98 10.06 22.45 0.23 -2.76 16 21 C -0.08 -1.15 10.02 22.21 0.22 -0.92 16 22 C -0.15 -2.43 10.07 22.31 0.22 -2.20 16 23 C -0.07 -1.32 10.03 22.18 0.22 -1.10 16 24 C -0.18 -4.19 4.93 -19.53 -0.10 -4.29 16 25 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 26 H 0.00 -0.23 8.14 -2.38 -0.02 -0.25 16 27 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 28 H 0.07 2.73 8.14 -2.38 -0.02 2.71 16 29 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 30 H 0.06 2.40 8.14 -2.38 -0.02 2.38 16 31 H 0.06 2.28 8.13 -2.38 -0.02 2.26 16 32 H 0.13 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.12 2.12 7.90 -2.39 -0.02 2.10 16 34 H 0.14 2.24 8.06 -2.91 -0.02 2.22 16 35 H 0.16 1.34 8.06 -2.91 -0.02 1.32 16 36 H 0.16 1.58 8.06 -2.91 -0.02 1.55 16 37 H 0.13 2.31 8.06 -2.91 -0.02 2.29 16 Total: -1.00 -73.01 323.70 5.52 -67.49 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: 1.06 Total: 7.26 kcal Atomic # 6 Polarization: -26.40 SS G_CDS: 3.38 Total: -23.01 kcal Atomic # 7 Polarization: -57.15 SS G_CDS: 0.28 Total: -56.87 kcal Atomic # 8 Polarization: -39.53 SS G_CDS: -1.23 Total: -40.76 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.89 kcal Total: -73.01 5.52 -67.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733866990.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.366 kcal (2) G-P(sol) polarization free energy of solvation -73.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds