Wall clock time and date at job start Mon Mar 30 2020 01:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86796 * 119.99757 * 2 1 4 4 H 1.48504 * 109.47020 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47190 * 300.00041 * 3 2 1 6 6 H 1.48496 * 109.47249 * 60.00135 * 3 2 1 7 7 C 1.37878 * 120.00038 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99916 * 186.11169 * 7 2 1 9 9 C 1.50701 * 119.99626 * 6.39360 * 7 2 1 10 10 C 1.52999 * 115.54913 * 274.88524 * 9 7 2 11 11 O 1.45207 * 109.47305 * 294.89081 * 10 9 7 12 12 C 1.34224 * 117.00145 * 179.97438 * 11 10 9 13 13 O 1.20829 * 119.99965 * 0.02562 * 12 11 10 14 14 C 1.50698 * 119.99958 * 180.02562 * 12 11 10 15 15 O 1.42898 * 109.47152 * 179.97438 * 14 12 11 16 16 C 1.35898 * 117.00260 * 179.97438 * 15 14 12 17 17 C 1.38734 * 120.05364 * 359.72988 * 16 15 14 18 18 C 1.38149 * 119.94331 * 179.73813 * 17 16 15 19 19 C 1.38270 * 120.05483 * 0.50938 * 18 17 16 20 20 C 1.38264 * 120.10991 * 359.76750 * 19 18 17 21 21 C 1.38145 * 120.06129 * 359.97401 * 20 19 18 22 22 C 1.53006 * 117.49654 * 129.22379 * 9 7 2 23 23 C 1.52997 * 117.50324 * 60.56017 * 9 7 2 24 24 H 0.96995 * 120.00267 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47042 * 54.89004 * 10 9 7 26 26 H 1.08998 * 109.47114 * 174.89243 * 10 9 7 27 27 H 1.09002 * 109.47048 * 299.99593 * 14 12 11 28 28 H 1.08995 * 109.47282 * 60.00032 * 14 12 11 29 29 H 1.07997 * 120.02683 * 359.97438 * 17 16 15 30 30 H 1.07995 * 119.97153 * 180.27397 * 18 17 16 31 31 H 1.07993 * 119.94667 * 179.74250 * 19 18 17 32 32 H 1.08000 * 119.97297 * 179.97438 * 20 19 18 33 33 H 1.07993 * 120.03245 * 179.97438 * 21 20 19 34 34 H 1.08998 * 117.49874 * 359.97438 * 22 9 7 35 35 H 1.08995 * 117.49819 * 145.01858 * 22 9 7 36 36 H 1.08998 * 117.50062 * 214.97901 * 23 9 7 37 37 H 1.09000 * 117.49878 * 359.97404 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0799 -1.1967 0.0990 9 6 1.2580 -2.4950 -0.1465 10 6 0.6970 -3.0829 1.1499 11 8 1.7929 -3.4500 2.0290 12 6 1.4686 -3.9840 3.2169 13 8 0.3074 -4.1401 3.5123 14 6 2.5526 -4.3890 4.1822 15 8 1.9598 -4.9264 5.3662 16 6 2.8053 -5.3431 6.3451 17 6 4.1775 -5.2421 6.1675 18 6 5.0348 -5.6613 7.1663 19 6 4.5266 -6.1910 8.3380 20 6 3.1595 -6.2980 8.5151 21 6 2.2978 -5.8753 7.5216 22 6 1.7504 -3.4763 -1.2121 23 6 0.4462 -2.7040 -1.4263 24 1 -0.4850 0.8400 0.0004 25 1 0.0685 -2.3413 1.6430 26 1 0.1033 -3.9677 0.9205 27 1 3.1882 -5.1437 3.7190 28 1 3.1533 -3.5170 4.4407 29 1 4.5750 -4.8325 5.2507 30 1 6.1030 -5.5788 7.0303 31 1 5.1984 -6.5221 9.1160 32 1 2.7649 -6.7125 9.4311 33 1 1.2301 -5.9595 7.6602 34 1 2.6140 -3.1808 -1.8079 35 1 1.6742 -4.5406 -0.9898 36 1 -0.4875 -3.2606 -1.3448 37 1 0.4516 -1.9004 -2.1627 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000744275499.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:09 Heat of formation + Delta-G solvation = -69.487318 kcal Electronic energy + Delta-G solvation = -20332.615833 eV Core-core repulsion = 17041.577112 eV Total energy + Delta-G solvation = -3291.038721 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.49279 -39.58300 -37.56173 -36.70502 -35.29219 -32.00878 -31.32249 -30.44129 -28.82100 -26.57269 -25.24266 -22.96767 -22.39061 -21.25764 -20.44782 -19.32395 -18.57530 -16.94894 -16.79923 -16.59900 -16.16214 -15.83860 -15.16431 -15.05034 -14.60944 -14.46318 -13.88763 -13.60059 -13.28181 -12.98593 -12.79828 -12.13392 -12.07132 -11.79744 -11.66465 -11.21815 -11.07563 -11.03767 -10.89978 -10.56176 -10.34344 -10.07462 -9.95032 -9.61539 -9.20481 -8.87646 -8.52276 -8.39697 -8.27238 -6.11590 -4.17340 1.13912 1.25266 2.38898 2.57957 3.24868 3.33631 3.37264 3.60043 3.71647 4.35364 4.59148 4.70715 4.86321 4.94454 4.99165 5.06071 5.17933 5.18285 5.28082 5.37888 5.47260 5.80730 5.91482 6.10670 6.17694 6.20376 6.26903 6.32962 6.45612 6.53305 6.59142 6.67482 6.98062 7.13357 7.20009 7.29918 7.40612 7.82026 8.24582 8.35032 8.84877 9.49058 10.97806 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.023576 B = 0.003580 C = 0.003369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.347874 B = 7818.696443 C = 8308.125283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.069 3.931 3 Si 0.893 3.107 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.491 4.491 8 H 0.064 0.936 9 C 0.036 3.964 10 C 0.117 3.883 11 O -0.333 6.333 12 C 0.456 3.544 13 O -0.500 6.500 14 C 0.068 3.932 15 O -0.294 6.294 16 C 0.134 3.866 17 C -0.211 4.211 18 C -0.080 4.080 19 C -0.162 4.162 20 C -0.082 4.082 21 C -0.150 4.150 22 C -0.205 4.205 23 C -0.144 4.144 24 H 0.261 0.739 25 H 0.079 0.921 26 H 0.041 0.959 27 H 0.103 0.897 28 H 0.106 0.894 29 H 0.132 0.868 30 H 0.125 0.875 31 H 0.122 0.878 32 H 0.128 0.872 33 H 0.132 0.868 34 H 0.082 0.918 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.064 -10.891 12.149 18.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.135 4.135 3 Si 0.720 3.280 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.529 4.529 8 H 0.082 0.918 9 C 0.036 3.964 10 C 0.045 3.955 11 O -0.249 6.249 12 C 0.297 3.703 13 O -0.388 6.388 14 C -0.008 4.008 15 O -0.207 6.207 16 C 0.088 3.912 17 C -0.229 4.229 18 C -0.098 4.098 19 C -0.181 4.181 20 C -0.100 4.100 21 C -0.168 4.168 22 C -0.242 4.242 23 C -0.182 4.182 24 H 0.071 0.929 25 H 0.097 0.903 26 H 0.060 0.940 27 H 0.121 0.879 28 H 0.124 0.876 29 H 0.150 0.850 30 H 0.143 0.857 31 H 0.140 0.860 32 H 0.146 0.854 33 H 0.150 0.850 34 H 0.100 0.900 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 7.313 -10.782 12.164 17.824 hybrid contribution 0.388 1.018 -0.124 1.096 sum 7.701 -9.764 12.041 17.310 Atomic orbital electron populations 1.70003 1.05927 1.26712 1.49035 1.25029 0.94870 0.99157 0.94431 0.86522 0.80276 0.83521 0.77658 1.19565 1.20880 1.20987 1.20424 0.93131 0.88293 1.51055 0.91754 1.18789 0.99040 0.94253 0.84346 1.23007 0.85599 0.97186 0.89745 1.86477 1.42008 1.70977 1.25404 1.22708 0.89063 0.75777 0.82757 1.90667 1.21014 1.50619 1.76514 1.21941 0.93706 1.01014 0.84170 1.86103 1.33846 1.75970 1.24756 1.19077 0.88830 0.94558 0.88725 1.21369 0.92294 1.07393 1.01891 1.20965 0.99561 0.96328 0.92914 1.21071 0.95403 1.03229 0.98347 1.20967 0.93153 0.97786 0.98069 1.20488 1.00996 1.03275 0.92090 1.23020 0.98452 0.95705 1.07041 1.22554 0.92529 1.01269 1.01815 0.92877 0.90303 0.94045 0.87889 0.87646 0.85009 0.85683 0.85977 0.85360 0.84980 0.89985 0.91483 0.91561 0.89351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.57 12.93 55.43 0.72 -23.85 16 2 C 0.07 1.84 5.39 -17.82 -0.10 1.75 16 3 Si 0.89 20.76 29.54 -169.99 -5.02 15.73 16 4 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.49 -13.15 8.77 -34.44 -0.30 -13.45 16 8 H 0.06 1.72 7.82 -52.49 -0.41 1.31 16 9 C 0.04 0.88 1.61 -155.66 -0.25 0.63 16 10 C 0.12 2.75 5.29 37.16 0.20 2.95 16 11 O -0.33 -7.08 10.16 -39.24 -0.40 -7.48 16 12 C 0.46 8.73 8.03 36.00 0.29 9.02 16 13 O -0.50 -11.15 16.25 -25.48 -0.41 -11.57 16 14 C 0.07 0.95 5.33 36.00 0.19 1.15 16 15 O -0.29 -4.50 9.67 -39.37 -0.38 -4.88 16 16 C 0.13 1.71 6.69 -39.21 -0.26 1.45 16 17 C -0.21 -2.27 9.04 -39.43 -0.36 -2.63 16 18 C -0.08 -0.73 10.04 -39.60 -0.40 -1.13 16 19 C -0.16 -1.42 10.04 -39.56 -0.40 -1.81 16 20 C -0.08 -0.75 10.04 -39.61 -0.40 -1.15 16 21 C -0.15 -1.71 9.99 -39.43 -0.39 -2.11 16 22 C -0.20 -4.35 9.96 -26.69 -0.27 -4.62 16 23 C -0.14 -3.29 9.43 -26.69 -0.25 -3.54 16 24 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 25 H 0.08 2.05 8.13 -51.93 -0.42 1.63 16 26 H 0.04 0.91 8.08 -51.93 -0.42 0.49 16 27 H 0.10 1.14 7.65 -51.93 -0.40 0.75 16 28 H 0.11 1.26 7.68 -51.93 -0.40 0.87 16 29 H 0.13 1.21 6.30 -52.49 -0.33 0.88 16 30 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 31 H 0.12 0.78 8.06 -52.49 -0.42 0.35 16 32 H 0.13 0.85 8.06 -52.49 -0.42 0.42 16 33 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 34 H 0.08 1.70 8.14 -51.93 -0.42 1.28 16 35 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 37 H 0.09 2.11 8.14 -51.93 -0.42 1.69 16 LS Contribution 328.28 15.07 4.95 4.95 Total: -1.00 -30.98 328.28 -8.14 -39.12 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -4.90 Total: 1.46 kcal Atomic # 6 Polarization: -10.80 SS G_CDS: -2.69 Total: -13.49 kcal Atomic # 7 Polarization: -24.57 SS G_CDS: 0.72 Total: -23.85 kcal Atomic # 8 Polarization: -22.73 SS G_CDS: -1.19 Total: -23.92 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.98 -8.14 -39.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744275499.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.363 kcal (2) G-P(sol) polarization free energy of solvation -30.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds