Wall clock time and date at job start Mon Mar 30 2020 01:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86796 * 119.99757 * 2 1 4 4 H 1.48504 * 109.47020 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47190 * 300.00041 * 3 2 1 6 6 H 1.48496 * 109.47249 * 60.00135 * 3 2 1 7 7 C 1.37878 * 120.00038 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99916 * 186.11169 * 7 2 1 9 9 C 1.50701 * 119.99626 * 6.39360 * 7 2 1 10 10 C 1.52999 * 115.54913 * 274.88524 * 9 7 2 11 11 O 1.45207 * 109.47305 * 294.89081 * 10 9 7 12 12 C 1.34224 * 117.00145 * 179.97438 * 11 10 9 13 13 O 1.20829 * 119.99965 * 0.02562 * 12 11 10 14 14 C 1.50698 * 119.99958 * 180.02562 * 12 11 10 15 15 O 1.42898 * 109.47152 * 179.97438 * 14 12 11 16 16 C 1.35898 * 117.00260 * 179.97438 * 15 14 12 17 17 C 1.38734 * 120.05364 * 359.72988 * 16 15 14 18 18 C 1.38149 * 119.94331 * 179.73813 * 17 16 15 19 19 C 1.38270 * 120.05483 * 0.50938 * 18 17 16 20 20 C 1.38264 * 120.10991 * 359.76750 * 19 18 17 21 21 C 1.38145 * 120.06129 * 359.97401 * 20 19 18 22 22 C 1.53006 * 117.49654 * 129.22379 * 9 7 2 23 23 C 1.52997 * 117.50324 * 60.56017 * 9 7 2 24 24 H 0.96995 * 120.00267 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47042 * 54.89004 * 10 9 7 26 26 H 1.08998 * 109.47114 * 174.89243 * 10 9 7 27 27 H 1.09002 * 109.47048 * 299.99593 * 14 12 11 28 28 H 1.08995 * 109.47282 * 60.00032 * 14 12 11 29 29 H 1.07997 * 120.02683 * 359.97438 * 17 16 15 30 30 H 1.07995 * 119.97153 * 180.27397 * 18 17 16 31 31 H 1.07993 * 119.94667 * 179.74250 * 19 18 17 32 32 H 1.08000 * 119.97297 * 179.97438 * 20 19 18 33 33 H 1.07993 * 120.03245 * 179.97438 * 21 20 19 34 34 H 1.08998 * 117.49874 * 359.97438 * 22 9 7 35 35 H 1.08995 * 117.49819 * 145.01858 * 22 9 7 36 36 H 1.08998 * 117.50062 * 214.97901 * 23 9 7 37 37 H 1.09000 * 117.49878 * 359.97404 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0799 -1.1967 0.0990 9 6 1.2580 -2.4950 -0.1465 10 6 0.6970 -3.0829 1.1499 11 8 1.7929 -3.4500 2.0290 12 6 1.4686 -3.9840 3.2169 13 8 0.3074 -4.1401 3.5123 14 6 2.5526 -4.3890 4.1822 15 8 1.9598 -4.9264 5.3662 16 6 2.8053 -5.3431 6.3451 17 6 4.1775 -5.2421 6.1675 18 6 5.0348 -5.6613 7.1663 19 6 4.5266 -6.1910 8.3380 20 6 3.1595 -6.2980 8.5151 21 6 2.2978 -5.8753 7.5216 22 6 1.7504 -3.4763 -1.2121 23 6 0.4462 -2.7040 -1.4263 24 1 -0.4850 0.8400 0.0004 25 1 0.0685 -2.3413 1.6430 26 1 0.1033 -3.9677 0.9205 27 1 3.1882 -5.1437 3.7190 28 1 3.1533 -3.5170 4.4407 29 1 4.5750 -4.8325 5.2507 30 1 6.1030 -5.5788 7.0303 31 1 5.1984 -6.5221 9.1160 32 1 2.7649 -6.7125 9.4311 33 1 1.2301 -5.9595 7.6602 34 1 2.6140 -3.1808 -1.8079 35 1 1.6742 -4.5406 -0.9898 36 1 -0.4875 -3.2606 -1.3448 37 1 0.4516 -1.9004 -2.1627 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000744275499.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:08 Heat of formation + Delta-G solvation = -85.320296 kcal Electronic energy + Delta-G solvation = -20333.302403 eV Core-core repulsion = 17041.577112 eV Total energy + Delta-G solvation = -3291.725291 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.73769 -40.84566 -38.76998 -38.19258 -36.99675 -34.03792 -32.12359 -31.34734 -29.98833 -28.27550 -27.19923 -23.84230 -23.28551 -22.97075 -21.84079 -21.22016 -19.56780 -18.49532 -18.34581 -17.94033 -17.50052 -16.82846 -16.74486 -16.39731 -16.23786 -15.58045 -15.21388 -14.89755 -14.32523 -14.19871 -14.15650 -13.68340 -13.51393 -13.44971 -12.94558 -12.84226 -12.47654 -12.38380 -12.17536 -12.10163 -11.92117 -11.75379 -11.65516 -11.39789 -10.79454 -10.51544 -10.11053 -9.94476 -9.22976 -8.15306 -6.26832 0.40094 0.47059 1.04477 1.12794 1.40663 1.43560 1.54499 2.41377 2.52091 2.84966 3.13864 3.33498 3.61436 3.85626 3.97232 3.99211 4.03553 4.11109 4.31375 4.35243 4.44111 4.47336 4.54289 4.63148 4.70631 4.80307 4.96302 5.10257 5.17297 5.34133 5.39648 5.48770 5.54945 5.60930 5.61216 5.74074 5.82082 6.31292 6.34006 6.68494 6.79446 7.42521 8.93757 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.023576 B = 0.003580 C = 0.003369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.347874 B = 7818.696443 C = 8308.125283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.022 3.978 3 Si 0.953 3.047 4 H -0.263 1.263 5 H -0.279 1.279 6 H -0.285 1.285 7 C -0.504 4.504 8 H 0.059 0.941 9 C 0.003 3.997 10 C 0.129 3.871 11 O -0.337 6.337 12 C 0.453 3.547 13 O -0.538 6.538 14 C 0.078 3.922 15 O -0.324 6.324 16 C 0.103 3.897 17 C -0.217 4.217 18 C -0.083 4.083 19 C -0.159 4.159 20 C -0.082 4.082 21 C -0.171 4.171 22 C -0.175 4.175 23 C -0.148 4.148 24 H 0.261 0.739 25 H 0.041 0.959 26 H 0.051 0.949 27 H 0.138 0.862 28 H 0.129 0.871 29 H 0.146 0.854 30 H 0.152 0.848 31 H 0.151 0.849 32 H 0.154 0.846 33 H 0.126 0.874 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.077 0.923 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.631 -11.783 13.095 20.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.179 4.179 3 Si 0.779 3.221 4 H -0.186 1.186 5 H -0.205 1.205 6 H -0.211 1.211 7 C -0.542 4.542 8 H 0.077 0.923 9 C 0.002 3.998 10 C 0.055 3.945 11 O -0.253 6.253 12 C 0.296 3.704 13 O -0.429 6.429 14 C 0.003 3.997 15 O -0.239 6.239 16 C 0.058 3.942 17 C -0.235 4.235 18 C -0.101 4.101 19 C -0.177 4.177 20 C -0.100 4.100 21 C -0.189 4.189 22 C -0.212 4.212 23 C -0.185 4.185 24 H 0.070 0.930 25 H 0.059 0.941 26 H 0.069 0.931 27 H 0.155 0.845 28 H 0.146 0.854 29 H 0.164 0.836 30 H 0.170 0.830 31 H 0.169 0.831 32 H 0.171 0.829 33 H 0.144 0.856 34 H 0.107 0.893 35 H 0.111 0.889 36 H 0.095 0.905 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 9.908 -11.689 13.117 20.170 hybrid contribution -0.373 1.215 -0.308 1.308 sum 9.535 -10.474 12.809 19.096 Atomic orbital electron populations 1.70113 1.07226 1.27300 1.50168 1.25753 0.95594 1.02271 0.94260 0.85574 0.79436 0.79637 0.77461 1.18647 1.20509 1.21110 1.20693 0.93089 0.89685 1.50709 0.92272 1.18882 1.00690 0.94893 0.85297 1.22613 0.85792 0.96456 0.89605 1.86472 1.41103 1.71372 1.26328 1.23760 0.89976 0.74236 0.82401 1.90645 1.23076 1.52162 1.76992 1.22027 0.91495 1.02938 0.83261 1.86038 1.35461 1.76841 1.25511 1.19360 0.89650 0.96443 0.88711 1.21597 0.91505 1.07402 1.03041 1.21361 1.00803 0.95411 0.92524 1.21498 0.95548 1.01819 0.98819 1.21303 0.93407 0.97024 0.98270 1.20707 1.01371 1.04174 0.92674 1.23036 0.97477 0.96407 1.04273 1.22497 0.93965 1.01431 1.00641 0.93017 0.94054 0.93098 0.84460 0.85363 0.83638 0.83022 0.83089 0.82864 0.85581 0.89335 0.88932 0.90470 0.91095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.88 12.93 21.45 0.28 -51.60 16 2 C 0.02 1.17 5.39 84.65 0.46 1.62 16 3 Si 0.95 42.76 29.54 68.60 2.03 44.79 16 4 H -0.26 -11.28 7.11 99.48 0.71 -10.58 16 5 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 6 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 7 C -0.50 -27.08 8.77 25.60 0.22 -26.85 16 8 H 0.06 3.15 7.82 -2.91 -0.02 3.13 16 9 C 0.00 0.14 1.61 -52.93 -0.08 0.05 16 10 C 0.13 6.14 5.29 71.98 0.38 6.52 16 11 O -0.34 -14.35 10.16 -51.36 -0.52 -14.87 16 12 C 0.45 17.44 8.03 71.24 0.57 18.01 16 13 O -0.54 -24.76 16.25 28.39 0.46 -24.30 16 14 C 0.08 2.11 5.33 71.24 0.38 2.49 16 15 O -0.32 -9.92 9.67 -73.33 -0.71 -10.63 16 16 C 0.10 2.56 6.69 22.51 0.15 2.71 16 17 C -0.22 -4.22 9.04 22.37 0.20 -4.02 16 18 C -0.08 -1.27 10.04 22.26 0.22 -1.05 16 19 C -0.16 -2.25 10.04 22.28 0.22 -2.03 16 20 C -0.08 -1.34 10.04 22.25 0.22 -1.12 16 21 C -0.17 -3.83 9.99 22.37 0.22 -3.61 16 22 C -0.17 -7.14 9.96 30.62 0.30 -6.84 16 23 C -0.15 -6.71 9.43 30.62 0.29 -6.42 16 24 H 0.26 14.21 8.31 -92.71 -0.77 13.44 16 25 H 0.04 2.24 8.13 -2.39 -0.02 2.23 16 26 H 0.05 2.27 8.08 -2.39 -0.02 2.26 16 27 H 0.14 2.73 7.65 -2.39 -0.02 2.71 16 28 H 0.13 2.86 7.68 -2.39 -0.02 2.84 16 29 H 0.15 2.28 6.30 -2.91 -0.02 2.26 16 30 H 0.15 1.46 8.06 -2.91 -0.02 1.44 16 31 H 0.15 1.25 8.06 -2.91 -0.02 1.23 16 32 H 0.15 1.62 8.06 -2.91 -0.02 1.60 16 33 H 0.13 2.82 8.06 -2.91 -0.02 2.79 16 34 H 0.09 3.49 8.14 -2.39 -0.02 3.47 16 35 H 0.09 3.30 8.14 -2.39 -0.02 3.28 16 36 H 0.08 3.27 8.14 -2.39 -0.02 3.25 16 37 H 0.07 3.43 8.14 -2.39 -0.02 3.41 16 Total: -1.00 -68.35 328.28 6.37 -61.99 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: 1.06 Total: 15.14 kcal Atomic # 6 Polarization: -24.29 SS G_CDS: 3.77 Total: -20.52 kcal Atomic # 7 Polarization: -51.88 SS G_CDS: 0.28 Total: -51.60 kcal Atomic # 8 Polarization: -49.03 SS G_CDS: -0.77 Total: -49.80 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Total: -68.35 6.37 -61.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744275499.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.333 kcal (2) G-P(sol) polarization free energy of solvation -68.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds