Wall clock time and date at job start Mon Mar 30 2020 01:42:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86802 * 120.00199 * 2 1 4 4 H 1.48502 * 109.46655 * 269.99816 * 3 2 1 5 5 H 1.48500 * 109.46926 * 29.99718 * 3 2 1 6 6 H 1.48495 * 109.47220 * 149.99910 * 3 2 1 7 7 C 1.38697 * 119.99670 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00118 * 180.02562 * 7 2 1 9 9 O 1.34816 * 120.00204 * 359.97438 * 7 2 1 10 10 C 1.35508 * 116.99821 * 185.06510 * 9 7 2 11 11 C 1.38822 * 120.16966 * 354.39871 * 10 9 7 12 12 C 1.38028 * 120.08290 * 179.97438 * 11 10 9 13 13 C 1.38587 * 120.40896 * 0.02562 * 12 11 10 14 14 C 1.37806 * 120.33557 * 359.97438 * 13 12 11 15 15 C 1.39734 * 119.91170 * 0.02562 * 14 13 12 16 16 C 1.47395 * 120.20505 * 180.02562 * 15 14 13 17 17 O 1.21505 * 120.00117 * 179.97438 * 16 15 14 18 18 O 1.34756 * 119.99656 * 359.97438 * 16 15 14 19 19 C 1.45208 * 116.99911 * 180.02562 * 18 16 15 20 20 C 1.52999 * 109.46918 * 180.02562 * 19 18 16 21 21 C 1.53004 * 109.46976 * 179.97438 * 20 19 18 22 22 C 1.52996 * 117.49742 * 243.74726 * 21 20 19 23 23 C 1.52998 * 117.50305 * 175.08639 * 21 20 19 24 24 H 0.97004 * 119.99410 * 0.02562 * 1 2 3 25 25 H 1.08007 * 119.96168 * 359.97438 * 11 10 9 26 26 H 1.07992 * 119.79355 * 180.27194 * 12 11 10 27 27 H 1.08001 * 119.83479 * 179.97438 * 13 12 11 28 28 H 1.07996 * 120.04662 * 180.02562 * 14 13 12 29 29 H 1.09002 * 109.46494 * 299.99684 * 19 18 16 30 30 H 1.08994 * 109.46961 * 59.99575 * 19 18 16 31 31 H 1.09002 * 109.47135 * 299.99115 * 20 19 18 32 32 H 1.08994 * 109.47796 * 59.99910 * 20 19 18 33 33 H 1.09006 * 115.54692 * 29.40903 * 21 20 19 34 34 H 1.08998 * 117.50014 * 359.97438 * 22 21 20 35 35 H 1.09003 * 117.49860 * 145.01602 * 22 21 20 36 36 H 1.08994 * 117.50039 * 214.97832 * 23 21 20 37 37 H 1.09002 * 117.49666 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0086 -1.2012 0.0005 8 1 3.0887 -1.2013 0.0010 9 8 1.3345 -2.3687 0.0016 10 6 2.0685 -3.5027 0.1087 11 6 3.4552 -3.4402 0.0941 12 6 4.2011 -4.5964 0.2039 13 6 3.5746 -5.8262 0.3286 14 6 2.1990 -5.9081 0.3449 15 6 1.4305 -4.7463 0.2348 16 6 -0.0412 -4.8263 0.2521 17 8 -0.7058 -3.8136 0.1565 18 8 -0.6495 -6.0226 0.3739 19 6 -2.1015 -6.0259 0.3829 20 6 -2.6073 -7.4625 0.5285 21 6 -4.1373 -7.4659 0.5387 22 6 -4.8342 -7.9449 1.8138 23 6 -4.8407 -8.8244 0.5610 24 1 -0.4849 0.8401 -0.0004 25 1 3.9512 -2.4857 -0.0031 26 1 5.2796 -4.5419 0.1965 27 1 4.1673 -6.7251 0.4134 28 1 1.7156 -6.8689 0.4427 29 1 -2.4609 -5.4279 1.2204 30 1 -2.4716 -5.6028 -0.5509 31 1 -2.2479 -8.0608 -0.3087 32 1 -2.2372 -7.8852 1.4625 33 1 -4.6129 -6.6620 -0.0232 34 1 -4.2027 -8.2579 2.6452 35 1 -5.7685 -7.4564 2.0905 36 1 -5.7792 -8.9143 0.0141 37 1 -4.2134 -9.7159 0.5680 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000744288899.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:17 Heat of formation + Delta-G solvation = -67.545499 kcal Electronic energy + Delta-G solvation = -20522.509190 eV Core-core repulsion = 17231.554672 eV Total energy + Delta-G solvation = -3290.954518 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.81392 -38.70261 -37.67976 -36.41850 -35.49385 -32.41432 -31.34867 -30.29272 -28.97067 -25.51722 -24.37643 -22.77168 -22.49209 -21.51366 -20.65075 -20.03503 -18.07425 -17.47477 -16.55824 -16.12541 -15.83531 -15.37162 -14.67820 -14.49462 -14.20472 -14.03347 -13.90172 -13.61939 -13.34741 -12.69928 -12.50153 -11.90426 -11.78674 -11.75297 -11.64420 -11.35174 -11.28642 -11.10137 -10.93310 -10.79303 -10.49900 -10.45522 -10.17500 -9.88251 -9.73835 -9.23423 -8.93641 -8.32760 -7.38445 -6.51364 -4.11349 1.60692 2.30366 3.08550 3.09914 3.14641 3.23863 3.47904 3.65243 3.88548 4.55312 4.59959 4.73713 4.77322 5.01154 5.08877 5.13298 5.27422 5.43100 5.46746 5.55110 5.56822 5.61660 5.71470 5.77836 5.88771 5.93646 6.03895 6.10632 6.13260 6.22108 6.57183 6.64987 6.89231 7.01233 7.11810 7.22695 7.31146 7.65394 7.87076 8.74926 8.88823 9.58047 10.62389 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.017847 B = 0.004361 C = 0.003548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.520345 B = 6418.652702 C = 7890.717059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.045 3.955 3 Si 0.943 3.057 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.265 1.265 7 C -0.404 4.404 8 H 0.096 0.904 9 O -0.125 6.125 10 C 0.191 3.809 11 C -0.239 4.239 12 C -0.044 4.044 13 C -0.235 4.235 14 C -0.016 4.016 15 C -0.216 4.216 16 C 0.497 3.503 17 O -0.477 6.477 18 O -0.369 6.369 19 C 0.072 3.928 20 C -0.086 4.086 21 C -0.152 4.152 22 C -0.180 4.180 23 C -0.178 4.178 24 H 0.273 0.727 25 H 0.134 0.866 26 H 0.112 0.888 27 H 0.112 0.888 28 H 0.124 0.876 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.108 0.892 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.013 -12.978 1.387 13.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C -0.163 4.163 3 Si 0.767 3.233 4 H -0.197 1.197 5 H -0.201 1.201 6 H -0.190 1.190 7 C -0.479 4.479 8 H 0.114 0.886 9 O -0.023 6.023 10 C 0.132 3.868 11 C -0.258 4.258 12 C -0.062 4.062 13 C -0.254 4.254 14 C -0.034 4.034 15 C -0.219 4.219 16 C 0.343 3.657 17 O -0.364 6.364 18 O -0.288 6.288 19 C -0.002 4.002 20 C -0.124 4.124 21 C -0.170 4.170 22 C -0.217 4.217 23 C -0.215 4.215 24 H 0.083 0.917 25 H 0.152 0.848 26 H 0.130 0.870 27 H 0.130 0.870 28 H 0.142 0.858 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.126 0.874 34 H 0.114 0.886 35 H 0.112 0.888 36 H 0.112 0.888 37 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -2.742 -12.401 1.338 12.771 hybrid contribution 0.366 0.895 -0.022 0.968 sum -2.376 -11.506 1.316 11.822 Atomic orbital electron populations 1.70124 1.06048 1.27919 1.42234 1.25419 0.95839 0.99060 0.96015 0.85690 0.79004 0.79745 0.78869 1.19665 1.20068 1.18969 1.21537 0.92010 0.80931 1.53429 0.88637 1.84147 1.33815 1.11168 1.73218 1.19235 0.90022 0.86999 0.90583 1.21110 0.93012 0.99486 1.12224 1.20965 0.98773 0.92288 0.94215 1.20540 0.94104 0.97215 1.13525 1.20963 0.93535 0.96231 0.92678 1.18051 0.88443 0.92541 1.22861 1.21076 0.89140 0.80886 0.74626 1.90997 1.65886 1.35205 1.44262 1.86475 1.22051 1.34809 1.85462 1.22818 0.77789 0.97182 1.02455 1.21090 0.92219 0.95747 1.03301 1.22173 0.94186 0.98523 1.02113 1.23079 1.02722 1.04005 0.91924 1.22970 1.02386 0.94358 1.01827 0.91730 0.84831 0.86960 0.86986 0.85771 0.91498 0.91579 0.90551 0.90821 0.87418 0.88623 0.88814 0.88810 0.88703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -24.82 13.67 55.48 0.76 -24.06 16 2 C 0.04 1.23 5.49 -17.52 -0.10 1.14 16 3 Si 0.94 20.24 29.55 -169.99 -5.02 15.22 16 4 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 5 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 6 H -0.27 -5.43 7.11 56.52 0.40 -5.02 16 7 C -0.40 -11.31 9.49 30.90 0.29 -11.01 16 8 H 0.10 2.41 5.21 -52.48 -0.27 2.14 16 9 O -0.13 -3.69 7.84 -21.03 -0.16 -3.85 16 10 C 0.19 4.77 6.66 -38.58 -0.26 4.51 16 11 C -0.24 -5.11 9.16 -39.44 -0.36 -5.47 16 12 C -0.04 -0.77 10.03 -39.53 -0.40 -1.17 16 13 C -0.23 -3.94 10.02 -39.61 -0.40 -4.34 16 14 C -0.02 -0.29 9.61 -39.18 -0.38 -0.67 16 15 C -0.22 -4.90 5.89 -104.82 -0.62 -5.52 16 16 C 0.50 11.58 7.89 34.46 0.27 11.85 16 17 O -0.48 -13.14 14.96 -26.59 -0.40 -13.54 16 18 O -0.37 -7.00 9.47 -40.64 -0.38 -7.38 16 19 C 0.07 1.14 5.43 37.16 0.20 1.35 16 20 C -0.09 -1.02 5.88 -26.73 -0.16 -1.18 16 21 C -0.15 -1.58 5.73 -90.62 -0.52 -2.09 16 22 C -0.18 -1.66 10.18 -26.70 -0.27 -1.93 16 23 C -0.18 -1.54 10.25 -26.70 -0.27 -1.82 16 24 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 25 H 0.13 2.78 5.64 -52.48 -0.30 2.48 16 26 H 0.11 1.59 8.06 -52.49 -0.42 1.16 16 27 H 0.11 1.52 8.06 -52.49 -0.42 1.09 16 28 H 0.12 1.96 7.61 -52.49 -0.40 1.56 16 29 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 30 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.07 0.84 7.87 -51.93 -0.41 0.43 16 33 H 0.11 1.13 8.08 -51.93 -0.42 0.71 16 34 H 0.10 0.85 8.03 -51.93 -0.42 0.43 16 35 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 324.23 15.07 4.89 4.89 Total: -1.00 -32.91 324.23 -8.01 -40.92 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -4.73 Total: 4.16 kcal Atomic # 6 Polarization: -13.39 SS G_CDS: -2.96 Total: -16.35 kcal Atomic # 7 Polarization: -24.82 SS G_CDS: 0.76 Total: -24.06 kcal Atomic # 8 Polarization: -23.83 SS G_CDS: -0.95 Total: -24.78 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -32.91 -8.01 -40.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744288899.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.623 kcal (2) G-P(sol) polarization free energy of solvation -32.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds