Wall clock time and date at job start Mon Mar 30 2020 01:42:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86802 * 120.00199 * 2 1 4 4 H 1.48502 * 109.46655 * 269.99816 * 3 2 1 5 5 H 1.48500 * 109.46926 * 29.99718 * 3 2 1 6 6 H 1.48495 * 109.47220 * 149.99910 * 3 2 1 7 7 C 1.38697 * 119.99670 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00118 * 180.02562 * 7 2 1 9 9 O 1.34816 * 120.00204 * 359.97438 * 7 2 1 10 10 C 1.35508 * 116.99821 * 185.06510 * 9 7 2 11 11 C 1.38822 * 120.16966 * 354.39871 * 10 9 7 12 12 C 1.38028 * 120.08290 * 179.97438 * 11 10 9 13 13 C 1.38587 * 120.40896 * 0.02562 * 12 11 10 14 14 C 1.37806 * 120.33557 * 359.97438 * 13 12 11 15 15 C 1.39734 * 119.91170 * 0.02562 * 14 13 12 16 16 C 1.47395 * 120.20505 * 180.02562 * 15 14 13 17 17 O 1.21505 * 120.00117 * 179.97438 * 16 15 14 18 18 O 1.34756 * 119.99656 * 359.97438 * 16 15 14 19 19 C 1.45208 * 116.99911 * 180.02562 * 18 16 15 20 20 C 1.52999 * 109.46918 * 180.02562 * 19 18 16 21 21 C 1.53004 * 109.46976 * 179.97438 * 20 19 18 22 22 C 1.52996 * 117.49742 * 243.74726 * 21 20 19 23 23 C 1.52998 * 117.50305 * 175.08639 * 21 20 19 24 24 H 0.97004 * 119.99410 * 0.02562 * 1 2 3 25 25 H 1.08007 * 119.96168 * 359.97438 * 11 10 9 26 26 H 1.07992 * 119.79355 * 180.27194 * 12 11 10 27 27 H 1.08001 * 119.83479 * 179.97438 * 13 12 11 28 28 H 1.07996 * 120.04662 * 180.02562 * 14 13 12 29 29 H 1.09002 * 109.46494 * 299.99684 * 19 18 16 30 30 H 1.08994 * 109.46961 * 59.99575 * 19 18 16 31 31 H 1.09002 * 109.47135 * 299.99115 * 20 19 18 32 32 H 1.08994 * 109.47796 * 59.99910 * 20 19 18 33 33 H 1.09006 * 115.54692 * 29.40903 * 21 20 19 34 34 H 1.08998 * 117.50014 * 359.97438 * 22 21 20 35 35 H 1.09003 * 117.49860 * 145.01602 * 22 21 20 36 36 H 1.08994 * 117.50039 * 214.97832 * 23 21 20 37 37 H 1.09002 * 117.49666 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0086 -1.2012 0.0005 8 1 3.0887 -1.2013 0.0010 9 8 1.3345 -2.3687 0.0016 10 6 2.0685 -3.5027 0.1087 11 6 3.4552 -3.4402 0.0941 12 6 4.2011 -4.5964 0.2039 13 6 3.5746 -5.8262 0.3286 14 6 2.1990 -5.9081 0.3449 15 6 1.4305 -4.7463 0.2348 16 6 -0.0412 -4.8263 0.2521 17 8 -0.7058 -3.8136 0.1565 18 8 -0.6495 -6.0226 0.3739 19 6 -2.1015 -6.0259 0.3829 20 6 -2.6073 -7.4625 0.5285 21 6 -4.1373 -7.4659 0.5387 22 6 -4.8342 -7.9449 1.8138 23 6 -4.8407 -8.8244 0.5610 24 1 -0.4849 0.8401 -0.0004 25 1 3.9512 -2.4857 -0.0031 26 1 5.2796 -4.5419 0.1965 27 1 4.1673 -6.7251 0.4134 28 1 1.7156 -6.8689 0.4427 29 1 -2.4609 -5.4279 1.2204 30 1 -2.4716 -5.6028 -0.5509 31 1 -2.2479 -8.0608 -0.3087 32 1 -2.2372 -7.8852 1.4625 33 1 -4.6129 -6.6620 -0.0232 34 1 -4.2027 -8.2579 2.6452 35 1 -5.7685 -7.4564 2.0905 36 1 -5.7792 -8.9143 0.0141 37 1 -4.2134 -9.7159 0.5680 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000744288899.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:17 Heat of formation + Delta-G solvation = -86.405961 kcal Electronic energy + Delta-G solvation = -20523.327041 eV Core-core repulsion = 17231.554672 eV Total energy + Delta-G solvation = -3291.772369 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.56327 -40.41398 -38.61783 -38.12738 -37.20157 -34.38070 -32.75030 -31.68009 -30.64063 -27.48122 -25.82991 -24.18002 -23.26944 -23.13597 -21.93264 -21.31225 -19.91806 -19.21053 -18.31223 -17.56904 -17.44044 -16.47343 -16.33694 -16.15593 -15.72029 -15.48251 -15.29858 -15.10617 -14.84329 -14.38917 -14.05126 -13.58071 -13.26144 -13.00845 -12.92735 -12.70926 -12.55442 -12.38139 -12.34689 -12.28912 -12.12869 -11.62108 -11.60905 -11.27611 -11.01996 -10.86540 -10.81686 -9.93066 -9.12575 -8.49197 -6.20680 -0.05238 0.68662 1.32908 1.44384 1.52273 1.69565 1.73076 2.13897 2.81513 2.87818 3.14245 3.36507 3.62167 3.88623 3.90961 4.03499 4.08523 4.11225 4.20847 4.26517 4.34635 4.51487 4.57788 4.62790 4.79459 4.84753 4.95631 4.98480 5.04363 5.05103 5.12521 5.26772 5.29458 5.42273 5.47080 5.60502 5.66036 5.92455 6.12241 6.89329 6.97669 7.70873 8.71120 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.017847 B = 0.004361 C = 0.003548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.520345 B = 6418.652702 C = 7890.717059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C -0.021 4.021 3 Si 1.024 2.976 4 H -0.261 1.261 5 H -0.273 1.273 6 H -0.246 1.246 7 C -0.429 4.429 8 H 0.112 0.888 9 O -0.189 6.189 10 C 0.157 3.843 11 C -0.257 4.257 12 C -0.027 4.027 13 C -0.203 4.203 14 C -0.012 4.012 15 C -0.239 4.239 16 C 0.497 3.503 17 O -0.533 6.533 18 O -0.354 6.354 19 C 0.066 3.934 20 C -0.071 4.071 21 C -0.173 4.173 22 C -0.182 4.182 23 C -0.161 4.161 24 H 0.272 0.728 25 H 0.131 0.869 26 H 0.161 0.839 27 H 0.167 0.833 28 H 0.157 0.843 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.098 0.902 36 H 0.105 0.895 37 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.735 -16.189 1.779 16.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.220 4.220 3 Si 0.842 3.158 4 H -0.186 1.186 5 H -0.198 1.198 6 H -0.169 1.169 7 C -0.504 4.504 8 H 0.130 0.870 9 O -0.091 6.091 10 C 0.102 3.898 11 C -0.276 4.276 12 C -0.045 4.045 13 C -0.222 4.222 14 C -0.030 4.030 15 C -0.242 4.242 16 C 0.345 3.655 17 O -0.423 6.423 18 O -0.272 6.272 19 C -0.008 4.008 20 C -0.108 4.108 21 C -0.191 4.191 22 C -0.219 4.219 23 C -0.198 4.198 24 H 0.081 0.919 25 H 0.149 0.851 26 H 0.179 0.821 27 H 0.184 0.816 28 H 0.175 0.825 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.105 0.895 32 H 0.102 0.898 33 H 0.118 0.882 34 H 0.118 0.882 35 H 0.117 0.883 36 H 0.123 0.877 37 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 0.051 -15.708 1.735 15.803 hybrid contribution -0.369 1.418 -0.113 1.469 sum -0.318 -14.290 1.622 14.385 Atomic orbital electron populations 1.70312 1.08461 1.28828 1.46383 1.26811 0.96755 1.03216 0.95232 0.84526 0.77930 0.73890 0.79406 1.18584 1.19786 1.16887 1.22114 0.92947 0.81444 1.53928 0.87048 1.84150 1.35519 1.12385 1.77058 1.19986 0.91897 0.86909 0.91034 1.21299 0.91728 1.01323 1.13207 1.21543 1.01058 0.90980 0.90882 1.21232 0.93542 0.98813 1.08566 1.21403 0.94462 0.95791 0.91316 1.18514 0.88565 0.93550 1.23558 1.21449 0.89803 0.81101 0.73193 1.90982 1.67166 1.37312 1.46887 1.86454 1.23807 1.32371 1.84530 1.23140 0.75957 1.00228 1.01477 1.21035 0.93179 0.92392 1.04221 1.22128 0.93196 1.00067 1.03735 1.23182 1.02788 1.03998 0.91924 1.23072 1.02490 0.93441 1.00799 0.91852 0.85100 0.82100 0.81563 0.82525 0.92803 0.92622 0.89474 0.89812 0.88221 0.88156 0.88314 0.87663 0.87535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -58.34 13.67 21.62 0.30 -58.05 16 2 C -0.02 -1.20 5.49 84.85 0.47 -0.73 16 3 Si 1.02 43.27 29.55 68.60 2.03 45.30 16 4 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 5 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 6 H -0.25 -9.39 7.11 99.48 0.71 -8.69 16 7 C -0.43 -25.50 9.49 67.93 0.64 -24.86 16 8 H 0.11 5.86 5.21 -2.91 -0.02 5.85 16 9 O -0.19 -11.92 7.84 0.95 0.01 -11.92 16 10 C 0.16 8.10 6.66 22.92 0.15 8.25 16 11 C -0.26 -10.73 9.16 22.36 0.20 -10.52 16 12 C -0.03 -0.81 10.03 22.30 0.22 -0.59 16 13 C -0.20 -5.59 10.02 22.25 0.22 -5.37 16 14 C -0.01 -0.39 9.61 22.53 0.22 -0.17 16 15 C -0.24 -10.93 5.89 -19.99 -0.12 -11.04 16 16 C 0.50 24.17 7.89 70.23 0.55 24.73 16 17 O -0.53 -31.77 14.96 26.81 0.40 -31.37 16 18 O -0.35 -13.53 9.47 -56.67 -0.54 -14.07 16 19 C 0.07 2.17 5.43 71.98 0.39 2.56 16 20 C -0.07 -1.61 5.88 30.60 0.18 -1.43 16 21 C -0.17 -3.45 5.73 -10.79 -0.06 -3.51 16 22 C -0.18 -3.08 10.18 30.62 0.31 -2.77 16 23 C -0.16 -2.42 10.25 30.62 0.31 -2.10 16 24 H 0.27 16.05 8.31 -92.71 -0.77 15.28 16 25 H 0.13 5.44 5.64 -2.91 -0.02 5.42 16 26 H 0.16 3.42 8.06 -2.91 -0.02 3.40 16 27 H 0.17 3.00 8.06 -2.91 -0.02 2.98 16 28 H 0.16 4.18 7.61 -2.91 -0.02 4.16 16 29 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.06 1.93 8.14 -2.39 -0.02 1.92 16 31 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.08 1.74 7.87 -2.39 -0.02 1.72 16 33 H 0.10 2.13 8.08 -2.38 -0.02 2.11 16 34 H 0.10 1.60 8.03 -2.39 -0.02 1.58 16 35 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -81.24 324.23 6.97 -74.26 By element: Atomic # 1 Polarization: 22.31 SS G_CDS: 1.08 Total: 23.39 kcal Atomic # 6 Polarization: -31.25 SS G_CDS: 3.70 Total: -27.55 kcal Atomic # 7 Polarization: -58.34 SS G_CDS: 0.30 Total: -58.05 kcal Atomic # 8 Polarization: -57.23 SS G_CDS: -0.13 Total: -57.36 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Total: -81.24 6.97 -74.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744288899.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.141 kcal (2) G-P(sol) polarization free energy of solvation -81.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds