Wall clock time and date at job start Mon Mar 30 2020 01:40:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31442 * 1 3 3 Si 1.86798 * 119.99867 * 2 1 4 4 H 1.48505 * 109.47208 * 270.00170 * 3 2 1 5 5 H 1.48505 * 109.47235 * 29.99819 * 3 2 1 6 6 H 1.48498 * 109.47336 * 149.99846 * 3 2 1 7 7 C 1.38752 * 120.00382 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99685 * 359.97438 * 7 2 1 9 9 O 1.34920 * 120.00213 * 180.02562 * 7 2 1 10 10 C 1.34312 * 116.99983 * 180.02562 * 9 7 2 11 11 O 1.21209 * 120.00017 * 359.97438 * 10 9 7 12 12 C 1.50699 * 119.99826 * 179.97438 * 10 9 7 13 13 C 1.53784 * 113.61242 * 179.97438 * 12 10 9 14 14 C 1.53782 * 87.08244 * 220.01954 * 13 12 10 15 15 O 1.42899 * 113.61338 * 139.98155 * 14 13 12 16 16 C 1.42903 * 113.99629 * 150.00210 * 15 14 13 17 17 C 1.50701 * 109.46878 * 179.97438 * 16 15 14 18 18 C 1.38233 * 120.00099 * 269.72733 * 17 16 15 19 19 C 1.38239 * 119.99655 * 179.76882 * 18 17 16 20 20 C 1.38230 * 120.00228 * 0.50243 * 19 18 17 21 21 C 1.38238 * 119.99995 * 359.75228 * 20 19 18 22 22 C 1.38238 * 120.00072 * 359.97438 * 21 20 19 23 23 C 1.53784 * 113.61413 * 82.50003 * 12 10 9 24 24 H 0.96996 * 119.99741 * 359.97438 * 1 2 3 25 25 H 1.08999 * 112.91043 * 311.25041 * 12 10 9 26 26 H 1.09000 * 113.61253 * 105.46888 * 13 12 10 27 27 H 1.08998 * 113.61760 * 334.56915 * 13 12 10 28 28 H 1.09003 * 113.61337 * 270.80399 * 14 13 12 29 29 H 1.09002 * 109.47382 * 59.99956 * 16 15 14 30 30 H 1.09001 * 109.46938 * 299.99942 * 16 15 14 31 31 H 1.08003 * 119.99927 * 359.97438 * 18 17 16 32 32 H 1.08000 * 119.99431 * 180.23215 * 19 18 17 33 33 H 1.07997 * 120.00220 * 179.73036 * 20 19 18 34 34 H 1.08002 * 119.99952 * 179.97438 * 21 20 19 35 35 H 1.07991 * 120.00062 * 179.97438 * 22 21 20 36 36 H 1.08999 * 113.61243 * 25.43153 * 23 12 10 37 37 H 1.08998 * 113.61929 * 254.52975 * 23 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6177 0.0000 4 1 2.4959 2.0465 -1.4001 5 1 1.4458 2.6527 0.7000 6 1 3.5459 1.4403 0.7001 7 6 2.0083 -1.2016 0.0005 8 1 1.4683 -2.1369 0.0014 9 8 3.3575 -1.2015 0.0011 10 6 3.9673 -2.3983 0.0010 11 8 3.3071 -3.4148 0.0010 12 6 5.4722 -2.4770 0.0010 13 6 6.0137 -3.9164 0.0016 14 6 7.0870 -3.4286 0.9890 15 8 7.3690 -4.3609 2.0346 16 6 8.7111 -4.2997 2.5214 17 6 8.8955 -5.3196 3.6155 18 6 8.6533 -4.9729 4.9315 19 6 8.8179 -5.9098 5.9346 20 6 9.2347 -7.1904 5.6226 21 6 9.4820 -7.5356 4.3071 22 6 9.3120 -6.6003 3.3034 23 6 6.0970 -2.3256 1.3980 24 1 -0.4849 0.8400 0.0004 25 1 5.9305 -1.8381 -0.7538 26 1 6.4167 -4.2317 -0.9608 27 1 5.3233 -4.6425 0.4308 28 1 7.9873 -3.0514 0.5039 29 1 8.9092 -3.3034 2.9168 30 1 9.4032 -4.5114 1.7064 31 1 8.3323 -3.9710 5.1757 32 1 8.6251 -5.6400 6.9624 33 1 9.3675 -7.9211 6.4067 34 1 9.8080 -8.5359 4.0634 35 1 9.5055 -6.8698 2.2758 36 1 5.4293 -2.6170 2.2088 37 1 6.5673 -1.3563 1.5633 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000747049724.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:49 Heat of formation + Delta-G solvation = -77.974942 kcal Electronic energy + Delta-G solvation = -20125.392837 eV Core-core repulsion = 16833.986065 eV Total energy + Delta-G solvation = -3291.406772 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.01619 -39.42812 -38.32571 -36.17206 -34.91273 -32.26212 -31.93250 -31.11189 -27.10143 -26.02853 -25.55620 -24.41224 -22.79341 -21.55078 -20.75952 -18.98968 -17.92388 -17.47549 -17.08713 -16.10175 -15.83002 -15.73460 -15.22875 -14.88703 -14.59361 -14.18654 -13.84313 -13.65464 -13.58083 -12.95312 -12.58552 -12.36346 -12.25120 -12.17821 -11.85560 -11.45887 -11.29090 -11.19141 -10.91697 -10.74374 -10.62999 -10.43102 -10.25391 -9.66354 -9.46565 -9.12639 -9.07653 -9.02036 -8.64780 -6.33505 -4.08856 1.05478 1.19590 3.15499 3.25022 3.35797 3.36672 3.42976 3.87869 4.26058 4.32878 4.54762 4.62216 4.66153 4.75565 4.80108 4.88015 4.95372 4.97043 5.08237 5.16918 5.17748 5.32039 5.44060 5.51135 5.74902 5.82468 5.83372 5.92740 6.13475 6.18013 6.22809 6.28471 6.34823 6.38953 6.56598 6.76713 7.23743 7.78861 8.07702 8.67191 9.05411 9.74471 10.75314 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.031168 B = 0.003086 C = 0.003041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.153695 B = 9070.702663 C = 9204.717793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.065 3.935 3 Si 0.905 3.095 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.260 1.260 7 C -0.381 4.381 8 H 0.108 0.892 9 O -0.251 6.251 10 C 0.421 3.579 11 O -0.537 6.537 12 C -0.100 4.100 13 C -0.112 4.112 14 C 0.061 3.939 15 O -0.363 6.363 16 C 0.099 3.901 17 C -0.089 4.089 18 C -0.098 4.098 19 C -0.124 4.124 20 C -0.117 4.117 21 C -0.125 4.125 22 C -0.099 4.099 23 C -0.137 4.137 24 H 0.279 0.721 25 H 0.114 0.886 26 H 0.076 0.924 27 H 0.106 0.894 28 H 0.090 0.910 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.124 0.876 32 H 0.123 0.877 33 H 0.121 0.879 34 H 0.122 0.878 35 H 0.123 0.877 36 H 0.096 0.904 37 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.886 -8.361 7.461 25.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.139 4.139 3 Si 0.731 3.269 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.184 1.184 7 C -0.457 4.457 8 H 0.126 0.874 9 O -0.160 6.160 10 C 0.266 3.734 11 O -0.432 6.432 12 C -0.120 4.120 13 C -0.150 4.150 14 C 0.004 3.996 15 O -0.282 6.282 16 C 0.023 3.977 17 C -0.089 4.089 18 C -0.116 4.116 19 C -0.142 4.142 20 C -0.135 4.135 21 C -0.143 4.143 22 C -0.117 4.117 23 C -0.174 4.174 24 H 0.089 0.911 25 H 0.132 0.868 26 H 0.095 0.905 27 H 0.124 0.876 28 H 0.108 0.892 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.142 0.858 32 H 0.141 0.859 33 H 0.139 0.861 34 H 0.140 0.860 35 H 0.141 0.859 36 H 0.114 0.886 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 22.374 -8.608 7.535 25.129 hybrid contribution 0.249 0.963 -0.129 1.003 sum 22.624 -7.645 7.405 25.002 Atomic orbital electron populations 1.69612 1.05710 1.28310 1.48004 1.24549 0.95005 0.98646 0.95673 0.86217 0.80314 0.81548 0.78858 1.19917 1.20816 1.18388 1.20663 0.76341 0.96920 1.51762 0.87400 1.83526 1.23810 1.31491 1.77172 1.22615 0.89958 0.82546 0.78241 1.90593 1.66746 1.36404 1.49411 1.21940 0.90650 0.99468 0.99933 1.23148 0.96921 0.96141 0.98771 1.23726 0.96596 0.90432 0.88892 1.88089 1.27790 1.58952 1.53346 1.21363 0.85071 0.96877 0.94382 1.19661 1.00319 0.94888 0.93994 1.21117 0.98297 0.99941 0.92279 1.21165 1.00034 0.93652 0.99359 1.21195 0.99222 0.96523 0.96582 1.21150 1.00727 0.99423 0.93007 1.21083 0.98602 0.92586 0.99460 1.23423 0.98270 0.99133 0.96610 0.91105 0.86752 0.90517 0.87575 0.89169 0.92387 0.92471 0.85812 0.85912 0.86092 0.85967 0.85914 0.88553 0.90409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.45 13.96 55.48 0.77 -25.67 16 2 C 0.06 1.88 5.49 -17.53 -0.10 1.79 16 3 Si 0.91 21.68 28.62 -169.99 -4.86 16.82 16 4 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.26 -6.07 7.11 56.52 0.40 -5.67 16 7 C -0.38 -11.60 10.10 30.92 0.31 -11.28 16 8 H 0.11 3.62 7.09 -52.49 -0.37 3.25 16 9 O -0.25 -6.78 8.58 -20.71 -0.18 -6.96 16 10 C 0.42 10.12 7.43 36.01 0.27 10.39 16 11 O -0.54 -14.65 15.14 -19.05 -0.29 -14.94 16 12 C -0.10 -1.71 4.26 -90.96 -0.39 -2.10 16 13 C -0.11 -1.69 7.24 -25.92 -0.19 -1.87 16 14 C 0.06 0.78 4.31 -25.93 -0.11 0.66 16 15 O -0.36 -4.95 10.34 -35.23 -0.36 -5.31 16 16 C 0.10 1.03 5.90 36.01 0.21 1.24 16 17 C -0.09 -0.95 5.51 -104.62 -0.58 -1.53 16 18 C -0.10 -1.01 9.70 -39.58 -0.38 -1.40 16 19 C -0.12 -1.14 10.05 -39.58 -0.40 -1.54 16 20 C -0.12 -1.02 10.05 -39.58 -0.40 -1.41 16 21 C -0.13 -1.11 10.05 -39.58 -0.40 -1.51 16 22 C -0.10 -0.98 9.70 -39.58 -0.38 -1.37 16 23 C -0.14 -2.03 7.46 -25.93 -0.19 -2.23 16 24 H 0.28 7.66 8.31 -40.82 -0.34 7.32 16 25 H 0.11 1.64 8.14 -51.93 -0.42 1.21 16 26 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.11 1.89 7.43 -51.93 -0.39 1.50 16 28 H 0.09 0.87 7.87 -51.93 -0.41 0.46 16 29 H 0.06 0.53 8.08 -51.93 -0.42 0.11 16 30 H 0.06 0.49 8.09 -51.93 -0.42 0.07 16 31 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 32 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 33 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 34 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 35 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 36 H 0.10 1.63 8.09 -51.93 -0.42 1.21 16 37 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 324.87 15.07 4.90 4.90 Total: -1.00 -34.62 324.87 -7.69 -42.31 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -4.94 Total: 1.02 kcal Atomic # 6 Polarization: -9.43 SS G_CDS: -2.72 Total: -12.15 kcal Atomic # 7 Polarization: -26.45 SS G_CDS: 0.77 Total: -25.67 kcal Atomic # 8 Polarization: -26.38 SS G_CDS: -0.83 Total: -27.21 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.86 Total: 16.82 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -34.62 -7.69 -42.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747049724.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.661 kcal (2) G-P(sol) polarization free energy of solvation -34.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds