Wall clock time and date at job start Mon Mar 30 2020 01:40:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31442 * 1 3 3 Si 1.86798 * 119.99867 * 2 1 4 4 H 1.48505 * 109.47208 * 270.00170 * 3 2 1 5 5 H 1.48505 * 109.47235 * 29.99819 * 3 2 1 6 6 H 1.48498 * 109.47336 * 149.99846 * 3 2 1 7 7 C 1.38752 * 120.00382 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99685 * 359.97438 * 7 2 1 9 9 O 1.34920 * 120.00213 * 180.02562 * 7 2 1 10 10 C 1.34312 * 116.99983 * 180.02562 * 9 7 2 11 11 O 1.21209 * 120.00017 * 359.97438 * 10 9 7 12 12 C 1.50699 * 119.99826 * 179.97438 * 10 9 7 13 13 C 1.53784 * 113.61242 * 179.97438 * 12 10 9 14 14 C 1.53782 * 87.08244 * 220.01954 * 13 12 10 15 15 O 1.42899 * 113.61338 * 139.98155 * 14 13 12 16 16 C 1.42903 * 113.99629 * 150.00210 * 15 14 13 17 17 C 1.50701 * 109.46878 * 179.97438 * 16 15 14 18 18 C 1.38233 * 120.00099 * 269.72733 * 17 16 15 19 19 C 1.38239 * 119.99655 * 179.76882 * 18 17 16 20 20 C 1.38230 * 120.00228 * 0.50243 * 19 18 17 21 21 C 1.38238 * 119.99995 * 359.75228 * 20 19 18 22 22 C 1.38238 * 120.00072 * 359.97438 * 21 20 19 23 23 C 1.53784 * 113.61413 * 82.50003 * 12 10 9 24 24 H 0.96996 * 119.99741 * 359.97438 * 1 2 3 25 25 H 1.08999 * 112.91043 * 311.25041 * 12 10 9 26 26 H 1.09000 * 113.61253 * 105.46888 * 13 12 10 27 27 H 1.08998 * 113.61760 * 334.56915 * 13 12 10 28 28 H 1.09003 * 113.61337 * 270.80399 * 14 13 12 29 29 H 1.09002 * 109.47382 * 59.99956 * 16 15 14 30 30 H 1.09001 * 109.46938 * 299.99942 * 16 15 14 31 31 H 1.08003 * 119.99927 * 359.97438 * 18 17 16 32 32 H 1.08000 * 119.99431 * 180.23215 * 19 18 17 33 33 H 1.07997 * 120.00220 * 179.73036 * 20 19 18 34 34 H 1.08002 * 119.99952 * 179.97438 * 21 20 19 35 35 H 1.07991 * 120.00062 * 179.97438 * 22 21 20 36 36 H 1.08999 * 113.61243 * 25.43153 * 23 12 10 37 37 H 1.08998 * 113.61929 * 254.52975 * 23 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6177 0.0000 4 1 2.4959 2.0465 -1.4001 5 1 1.4458 2.6527 0.7000 6 1 3.5459 1.4403 0.7001 7 6 2.0083 -1.2016 0.0005 8 1 1.4683 -2.1369 0.0014 9 8 3.3575 -1.2015 0.0011 10 6 3.9673 -2.3983 0.0010 11 8 3.3071 -3.4148 0.0010 12 6 5.4722 -2.4770 0.0010 13 6 6.0137 -3.9164 0.0016 14 6 7.0870 -3.4286 0.9890 15 8 7.3690 -4.3609 2.0346 16 6 8.7111 -4.2997 2.5214 17 6 8.8955 -5.3196 3.6155 18 6 8.6533 -4.9729 4.9315 19 6 8.8179 -5.9098 5.9346 20 6 9.2347 -7.1904 5.6226 21 6 9.4820 -7.5356 4.3071 22 6 9.3120 -6.6003 3.3034 23 6 6.0970 -2.3256 1.3980 24 1 -0.4849 0.8400 0.0004 25 1 5.9305 -1.8381 -0.7538 26 1 6.4167 -4.2317 -0.9608 27 1 5.3233 -4.6425 0.4308 28 1 7.9873 -3.0514 0.5039 29 1 8.9092 -3.3034 2.9168 30 1 9.4032 -4.5114 1.7064 31 1 8.3323 -3.9710 5.1757 32 1 8.6251 -5.6400 6.9624 33 1 9.3675 -7.9211 6.4067 34 1 9.8080 -8.5359 4.0634 35 1 9.5055 -6.8698 2.2758 36 1 5.4293 -2.6170 2.2088 37 1 6.5673 -1.3563 1.5633 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000747049724.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:49 Heat of formation + Delta-G solvation = -99.265963 kcal Electronic energy + Delta-G solvation = -20126.316085 eV Core-core repulsion = 16833.986065 eV Total energy + Delta-G solvation = -3292.330020 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.57960 -40.35226 -39.66087 -37.60595 -36.64949 -34.51313 -32.68712 -31.78595 -28.73975 -27.14956 -26.73963 -26.03033 -23.47531 -22.32706 -22.24209 -20.46355 -20.11583 -19.02280 -17.89590 -17.57447 -16.89986 -16.74795 -16.55692 -16.32949 -15.93174 -15.64901 -15.15331 -14.80913 -14.43467 -14.26478 -14.09122 -13.67642 -13.51786 -13.40116 -13.15158 -12.96929 -12.51759 -12.35491 -12.25817 -12.01129 -11.91818 -11.83292 -11.73202 -11.63469 -11.02896 -10.84909 -10.40739 -9.82123 -9.75314 -8.56374 -6.43945 0.34570 0.50040 1.28085 1.33086 1.51778 1.57418 2.25731 2.33842 2.71157 2.88681 3.21485 3.41301 3.53867 3.74525 3.87350 3.95680 4.02118 4.16270 4.28414 4.35080 4.39990 4.48295 4.52863 4.65747 4.71540 4.77434 4.78665 4.96091 5.03235 5.09132 5.15941 5.25209 5.47343 5.55169 5.60918 5.67765 5.88326 6.10290 6.34512 6.52876 6.80790 7.58482 8.57074 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.031168 B = 0.003086 C = 0.003041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.153695 B = 9070.702663 C = 9204.717793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.013 3.987 3 Si 0.988 3.012 4 H -0.257 1.257 5 H -0.266 1.266 6 H -0.247 1.247 7 C -0.412 4.412 8 H 0.051 0.949 9 O -0.255 6.255 10 C 0.416 3.584 11 O -0.580 6.580 12 C -0.100 4.100 13 C -0.118 4.118 14 C 0.084 3.916 15 O -0.390 6.390 16 C 0.096 3.904 17 C -0.110 4.110 18 C -0.117 4.117 19 C -0.135 4.135 20 C -0.123 4.123 21 C -0.133 4.133 22 C -0.113 4.113 23 C -0.139 4.139 24 H 0.290 0.710 25 H 0.157 0.843 26 H 0.106 0.894 27 H 0.066 0.934 28 H 0.139 0.861 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.127 0.873 32 H 0.139 0.861 33 H 0.143 0.857 34 H 0.143 0.857 35 H 0.134 0.866 36 H 0.063 0.937 37 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.451 -6.888 7.396 28.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.187 4.187 3 Si 0.807 3.193 4 H -0.181 1.181 5 H -0.190 1.190 6 H -0.170 1.170 7 C -0.488 4.488 8 H 0.069 0.931 9 O -0.164 6.164 10 C 0.264 3.736 11 O -0.476 6.476 12 C -0.119 4.119 13 C -0.155 4.155 14 C 0.027 3.973 15 O -0.310 6.310 16 C 0.021 3.979 17 C -0.110 4.110 18 C -0.135 4.135 19 C -0.153 4.153 20 C -0.141 4.141 21 C -0.151 4.151 22 C -0.131 4.131 23 C -0.176 4.176 24 H 0.100 0.900 25 H 0.174 0.826 26 H 0.124 0.876 27 H 0.085 0.915 28 H 0.156 0.844 29 H 0.090 0.910 30 H 0.098 0.902 31 H 0.145 0.855 32 H 0.157 0.843 33 H 0.161 0.839 34 H 0.161 0.839 35 H 0.152 0.848 36 H 0.082 0.918 37 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 25.941 -7.164 7.475 27.931 hybrid contribution -0.894 0.299 -0.055 0.945 sum 25.047 -6.865 7.420 27.010 Atomic orbital electron populations 1.69718 1.07752 1.30304 1.48200 1.25672 0.96039 1.02978 0.93991 0.85012 0.79040 0.75252 0.79983 1.18120 1.19046 1.17048 1.20324 0.78066 0.95647 1.54790 0.93077 1.83540 1.21709 1.32928 1.78234 1.24332 0.92926 0.81122 0.75205 1.90572 1.68635 1.37689 1.50722 1.22327 0.84760 1.01982 1.02813 1.23172 0.97248 0.94067 1.01044 1.23637 0.97125 0.88702 0.87837 1.88065 1.30041 1.59167 1.53708 1.21570 0.83784 0.97570 0.95019 1.19890 1.01107 0.95618 0.94389 1.21338 0.98906 1.00562 0.92732 1.21466 0.99845 0.93880 1.00096 1.21544 0.98487 0.96817 0.97285 1.21490 1.00262 1.00297 0.93018 1.21347 0.98723 0.92614 1.00408 1.23464 0.98361 1.01837 0.93975 0.90046 0.82595 0.87606 0.91525 0.84388 0.91039 0.90204 0.85482 0.84301 0.83883 0.83911 0.84797 0.91846 0.87310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.01 13.96 21.62 0.30 -56.71 16 2 C 0.01 0.76 5.49 84.87 0.47 1.22 16 3 Si 0.99 44.01 28.62 68.60 1.96 45.97 16 4 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 5 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 6 H -0.25 -10.43 7.11 99.48 0.71 -9.72 16 7 C -0.41 -26.30 10.10 67.94 0.69 -25.61 16 8 H 0.05 3.74 7.09 -2.91 -0.02 3.72 16 9 O -0.25 -14.00 8.58 14.85 0.13 -13.87 16 10 C 0.42 20.53 7.43 71.24 0.53 21.06 16 11 O -0.58 -33.61 15.14 20.78 0.31 -33.30 16 12 C -0.10 -3.21 4.26 -11.01 -0.05 -3.26 16 13 C -0.12 -3.36 7.24 31.12 0.23 -3.13 16 14 C 0.08 1.87 4.31 31.11 0.13 2.00 16 15 O -0.39 -9.93 10.34 -148.98 -1.54 -11.47 16 16 C 0.10 1.74 5.90 71.24 0.42 2.16 16 17 C -0.11 -2.23 5.51 -19.86 -0.11 -2.34 16 18 C -0.12 -2.33 9.70 22.27 0.22 -2.11 16 19 C -0.14 -2.35 10.05 22.27 0.22 -2.12 16 20 C -0.12 -1.95 10.05 22.27 0.22 -1.73 16 21 C -0.13 -2.15 10.05 22.27 0.22 -1.93 16 22 C -0.11 -2.08 9.70 22.27 0.22 -1.86 16 23 C -0.14 -3.82 7.46 31.11 0.23 -3.59 16 24 H 0.29 16.09 8.31 -92.71 -0.77 15.32 16 25 H 0.16 3.78 8.14 -2.39 -0.02 3.76 16 26 H 0.11 2.37 8.14 -2.39 -0.02 2.35 16 27 H 0.07 2.44 7.43 -2.39 -0.02 2.43 16 28 H 0.14 1.82 7.87 -2.39 -0.02 1.80 16 29 H 0.07 1.08 8.08 -2.39 -0.02 1.06 16 30 H 0.08 1.07 8.09 -2.39 -0.02 1.05 16 31 H 0.13 2.28 8.06 -2.91 -0.02 2.26 16 32 H 0.14 1.82 8.06 -2.91 -0.02 1.79 16 33 H 0.14 1.52 8.06 -2.91 -0.02 1.50 16 34 H 0.14 1.61 8.06 -2.91 -0.02 1.58 16 35 H 0.13 2.02 8.06 -2.92 -0.02 2.00 16 36 H 0.06 2.17 8.09 -2.39 -0.02 2.15 16 37 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 Total: -1.00 -81.47 324.87 5.87 -75.60 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: 1.06 Total: 15.02 kcal Atomic # 6 Polarization: -24.89 SS G_CDS: 3.64 Total: -21.25 kcal Atomic # 7 Polarization: -57.01 SS G_CDS: 0.30 Total: -56.71 kcal Atomic # 8 Polarization: -57.54 SS G_CDS: -1.10 Total: -58.63 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 1.96 Total: 45.97 kcal Total: -81.47 5.87 -75.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747049724.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.664 kcal (2) G-P(sol) polarization free energy of solvation -81.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds