Wall clock time and date at job start Mon Mar 30 2020 01:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.33082 * 119.99899 * 2 1 4 4 C 1.50698 * 120.00230 * 179.97438 * 3 2 1 5 5 C 1.46955 * 120.00134 * 0.02562 * 3 2 1 6 6 O 1.21538 * 119.99794 * 359.97438 * 5 3 2 7 7 O 1.34792 * 120.00205 * 180.02562 * 5 3 2 8 8 C 1.45197 * 117.00276 * 179.97438 * 7 5 3 9 9 C 1.50705 * 109.47268 * 179.97438 * 8 7 5 10 10 C 1.38303 * 119.92926 * 269.72412 * 9 8 7 11 11 C 1.38096 * 120.06672 * 179.72568 * 10 9 8 12 12 C 1.38883 * 119.93057 * 0.57051 * 11 10 9 13 13 O 1.35747 * 120.07104 * 179.68153 * 12 11 10 14 14 C 1.34825 * 117.00102 * 174.48913 * 13 12 11 15 15 H 1.07997 * 120.00093 * 5.05478 * 14 13 12 16 16 C 1.38654 * 120.00114 * 185.05880 * 14 13 12 17 17 N 1.31562 * 119.99877 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00345 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47111 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47635 * 119.99686 * 18 16 14 21 21 H 1.48505 * 109.47150 * 239.99878 * 18 16 14 22 22 C 1.38885 * 119.85940 * 359.70527 * 12 11 10 23 23 C 1.38100 * 119.93131 * 0.02562 * 22 12 11 24 24 H 1.09000 * 109.47110 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47451 * 299.99895 * 1 2 3 26 26 H 1.09000 * 109.47814 * 59.99973 * 1 2 3 27 27 H 1.07998 * 120.00065 * 179.97438 * 2 1 3 28 28 H 1.09009 * 109.47172 * 270.00496 * 4 3 2 29 29 H 1.09003 * 109.47066 * 29.99794 * 4 3 2 30 30 H 1.08993 * 109.47498 * 150.00223 * 4 3 2 31 31 H 1.08994 * 109.47034 * 299.99555 * 8 7 5 32 32 H 1.09001 * 109.47385 * 59.99517 * 8 7 5 33 33 H 1.08001 * 119.96577 * 359.97438 * 10 9 8 34 34 H 1.08000 * 120.03259 * 180.27038 * 11 10 9 35 35 H 0.97002 * 120.00002 * 180.02562 * 17 16 14 36 36 H 1.08000 * 120.02754 * 179.97438 * 22 12 11 37 37 H 1.07997 * 119.96094 * 180.02562 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1723 1.1525 0.0000 4 6 3.6793 1.1526 0.0006 5 6 1.4376 2.4252 0.0006 6 8 0.2222 2.4252 0.0006 7 8 2.1115 3.5926 0.0000 8 6 1.3207 4.8103 0.0001 9 6 2.2387 6.0055 0.0001 10 6 2.6545 6.5562 1.1987 11 6 3.5002 7.6479 1.2020 12 6 3.9238 8.2000 0.0001 13 8 4.7499 9.2772 0.0001 14 6 5.2140 9.6926 -1.1956 15 1 4.8618 9.2256 -2.1035 16 6 6.1435 10.7195 -1.2598 17 7 6.5722 11.2887 -0.1539 18 14 6.7871 11.2947 -2.9164 19 1 6.1528 10.4983 -3.9975 20 1 6.4606 12.7313 -3.1027 21 1 8.2599 11.1112 -2.9661 22 6 3.4999 7.6482 -1.2018 23 6 2.6586 6.5530 -1.1984 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3635 0.5138 -0.8899 27 1 2.0469 -0.9353 0.0004 28 1 4.0423 1.1528 1.0285 29 1 4.0429 0.2625 -0.5129 30 1 4.0428 2.0425 -0.5132 31 1 0.6916 4.8350 -0.8897 32 1 0.6921 4.8354 0.8903 33 1 2.3206 6.1296 2.1330 34 1 3.8281 8.0748 2.1384 35 1 7.2222 12.0074 -0.1988 36 1 3.8272 8.0756 -2.1380 37 1 2.3289 6.1232 -2.1328 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000750893445.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:37 Heat of formation + Delta-G solvation = -78.736612 kcal Electronic energy + Delta-G solvation = -20102.441678 eV Core-core repulsion = 16811.001878 eV Total energy + Delta-G solvation = -3291.439801 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.41596 -39.08821 -37.22421 -36.18597 -35.14125 -32.44038 -30.83332 -30.27036 -30.04042 -26.26125 -25.32440 -24.76584 -22.95083 -22.05375 -20.58351 -19.47562 -18.07628 -17.27975 -16.99136 -16.24664 -15.75519 -14.74879 -14.67186 -14.56585 -14.32593 -13.87950 -13.69369 -13.57686 -13.17819 -12.96463 -12.78983 -12.72573 -12.45585 -12.20757 -12.17731 -11.72734 -11.68907 -11.38041 -11.01795 -10.79147 -10.69720 -10.47478 -10.40013 -10.06708 -9.40828 -9.31596 -8.91161 -8.26376 -7.32809 -6.52533 -4.11121 1.02105 1.97683 2.15867 2.87945 3.01499 3.10102 3.13533 3.16087 3.91064 4.44976 4.61301 4.72921 4.95812 5.03005 5.16776 5.22620 5.23788 5.26555 5.47229 5.51999 5.59006 5.60092 5.65951 5.77592 5.78333 5.93748 6.13150 6.15032 6.30614 6.33867 6.58991 6.61396 6.81399 6.97587 7.15751 7.27725 7.35878 7.72093 7.85280 7.92513 8.92916 9.61071 10.65080 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.034269 B = 0.003077 C = 0.003001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.865648 B = 9097.892481 C = 9329.366164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.069 4.069 3 C -0.168 4.168 4 C -0.112 4.112 5 C 0.493 3.507 6 O -0.514 6.514 7 O -0.345 6.345 8 C 0.130 3.870 9 C -0.203 4.203 10 C -0.049 4.049 11 C -0.196 4.196 12 C 0.163 3.837 13 O -0.172 6.172 14 C -0.393 4.393 15 H 0.094 0.906 16 C 0.040 3.960 17 N -0.859 5.859 18 Si 0.943 3.057 19 H -0.266 1.266 20 H -0.275 1.275 21 H -0.275 1.275 22 C -0.238 4.238 23 C -0.045 4.045 24 H 0.055 0.945 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.132 0.868 28 H 0.071 0.929 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.113 0.887 34 H 0.120 0.880 35 H 0.271 0.729 36 H 0.130 0.870 37 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.470 -18.051 -0.661 19.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.087 4.087 3 C -0.169 4.169 4 C -0.168 4.168 5 C 0.340 3.660 6 O -0.406 6.406 7 O -0.262 6.262 8 C 0.058 3.942 9 C -0.204 4.204 10 C -0.067 4.067 11 C -0.215 4.215 12 C 0.108 3.892 13 O -0.075 6.075 14 C -0.469 4.469 15 H 0.112 0.888 16 C -0.165 4.165 17 N -0.494 5.494 18 Si 0.767 3.233 19 H -0.190 1.190 20 H -0.201 1.201 21 H -0.201 1.201 22 C -0.257 4.257 23 C -0.063 4.063 24 H 0.074 0.926 25 H 0.100 0.900 26 H 0.100 0.900 27 H 0.150 0.850 28 H 0.090 0.910 29 H 0.085 0.915 30 H 0.096 0.904 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.131 0.869 34 H 0.138 0.862 35 H 0.081 0.919 36 H 0.147 0.853 37 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -7.558 -17.637 -0.417 19.193 hybrid contribution 0.262 0.369 -0.857 0.969 sum -7.296 -17.268 -1.274 18.790 Atomic orbital electron populations 1.21102 0.91703 1.01358 1.04161 1.23738 0.97260 0.96648 0.91088 1.20913 0.97097 0.90151 1.08720 1.20734 0.89817 1.03423 1.02868 1.21407 0.86125 0.85309 0.73208 1.90820 1.14974 1.88387 1.46427 1.86742 1.41727 1.14537 1.83209 1.21680 0.91630 0.79001 1.01931 1.18871 1.08414 0.99169 0.93979 1.20508 0.95143 0.94582 0.96472 1.20197 1.04833 1.00096 0.96374 1.19437 0.89680 0.86747 0.93304 1.83976 1.53374 1.36949 1.33199 1.21419 1.23871 1.18521 0.83074 0.88827 1.25329 0.95818 0.95924 0.99425 1.70050 1.29102 1.23149 1.27049 0.85620 0.78863 0.78841 0.79959 1.19013 1.20069 1.20050 1.21145 1.05066 1.00921 0.98564 1.20616 0.94845 0.94545 0.96331 0.92630 0.90028 0.90012 0.85021 0.90998 0.91488 0.90351 0.91320 0.91281 0.86911 0.86211 0.91921 0.85269 0.87354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.15 8.45 36.00 0.30 -0.85 16 2 C -0.07 -0.60 9.95 -36.10 -0.36 -0.96 16 3 C -0.17 -1.83 6.00 -102.89 -0.62 -2.45 16 4 C -0.11 -1.04 9.84 36.00 0.35 -0.69 16 5 C 0.49 6.92 7.85 34.26 0.27 7.19 16 6 O -0.51 -7.86 12.86 -19.29 -0.25 -8.11 16 7 O -0.35 -5.32 9.47 -40.74 -0.39 -5.71 16 8 C 0.13 1.99 5.60 36.01 0.20 2.19 16 9 C -0.20 -3.58 5.52 -104.57 -0.58 -4.16 16 10 C -0.05 -0.88 9.69 -39.61 -0.38 -1.26 16 11 C -0.20 -4.09 9.99 -39.39 -0.39 -4.48 16 12 C 0.16 3.89 6.65 -39.10 -0.26 3.63 16 13 O -0.17 -4.85 9.76 0.07 0.00 -4.85 16 14 C -0.39 -10.79 9.49 30.89 0.29 -10.50 16 15 H 0.09 2.38 5.20 -52.49 -0.27 2.11 16 16 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 17 N -0.86 -24.82 13.67 55.48 0.76 -24.06 16 18 Si 0.94 20.16 29.55 -169.99 -5.02 15.14 16 19 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 20 H -0.28 -5.77 7.11 56.52 0.40 -5.36 16 21 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 22 C -0.24 -5.11 9.17 -39.39 -0.36 -5.47 16 23 C -0.04 -0.83 9.69 -39.61 -0.38 -1.22 16 24 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.08 0.85 7.22 -51.93 -0.37 0.48 16 26 H 0.08 0.86 7.22 -51.93 -0.38 0.48 16 27 H 0.13 0.76 8.06 -52.49 -0.42 0.33 16 28 H 0.07 0.63 8.14 -51.92 -0.42 0.20 16 29 H 0.07 0.48 8.07 -51.93 -0.42 0.06 16 30 H 0.08 0.85 7.68 -51.93 -0.40 0.45 16 31 H 0.07 0.99 8.08 -51.93 -0.42 0.57 16 32 H 0.07 0.99 8.08 -51.93 -0.42 0.57 16 33 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 34 H 0.12 2.39 8.06 -52.49 -0.42 1.97 16 35 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 36 H 0.13 2.76 5.64 -52.49 -0.30 2.46 16 37 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 LS Contribution 324.03 15.07 4.88 4.88 Total: -1.00 -30.81 324.03 -6.67 -37.48 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -4.65 Total: 3.26 kcal Atomic # 6 Polarization: -16.03 SS G_CDS: -2.01 Total: -18.04 kcal Atomic # 7 Polarization: -24.82 SS G_CDS: 0.76 Total: -24.06 kcal Atomic # 8 Polarization: -18.03 SS G_CDS: -0.63 Total: -18.66 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.81 -6.67 -37.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750893445.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.255 kcal (2) G-P(sol) polarization free energy of solvation -30.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds