Wall clock time and date at job start Mon Mar 30 2020 01:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.33082 * 119.99899 * 2 1 4 4 C 1.50698 * 120.00230 * 179.97438 * 3 2 1 5 5 C 1.46955 * 120.00134 * 0.02562 * 3 2 1 6 6 O 1.21538 * 119.99794 * 359.97438 * 5 3 2 7 7 O 1.34792 * 120.00205 * 180.02562 * 5 3 2 8 8 C 1.45197 * 117.00276 * 179.97438 * 7 5 3 9 9 C 1.50705 * 109.47268 * 179.97438 * 8 7 5 10 10 C 1.38303 * 119.92926 * 269.72412 * 9 8 7 11 11 C 1.38096 * 120.06672 * 179.72568 * 10 9 8 12 12 C 1.38883 * 119.93057 * 0.57051 * 11 10 9 13 13 O 1.35747 * 120.07104 * 179.68153 * 12 11 10 14 14 C 1.34825 * 117.00102 * 174.48913 * 13 12 11 15 15 H 1.07997 * 120.00093 * 5.05478 * 14 13 12 16 16 C 1.38654 * 120.00114 * 185.05880 * 14 13 12 17 17 N 1.31562 * 119.99877 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00345 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47111 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47635 * 119.99686 * 18 16 14 21 21 H 1.48505 * 109.47150 * 239.99878 * 18 16 14 22 22 C 1.38885 * 119.85940 * 359.70527 * 12 11 10 23 23 C 1.38100 * 119.93131 * 0.02562 * 22 12 11 24 24 H 1.09000 * 109.47110 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47451 * 299.99895 * 1 2 3 26 26 H 1.09000 * 109.47814 * 59.99973 * 1 2 3 27 27 H 1.07998 * 120.00065 * 179.97438 * 2 1 3 28 28 H 1.09009 * 109.47172 * 270.00496 * 4 3 2 29 29 H 1.09003 * 109.47066 * 29.99794 * 4 3 2 30 30 H 1.08993 * 109.47498 * 150.00223 * 4 3 2 31 31 H 1.08994 * 109.47034 * 299.99555 * 8 7 5 32 32 H 1.09001 * 109.47385 * 59.99517 * 8 7 5 33 33 H 1.08001 * 119.96577 * 359.97438 * 10 9 8 34 34 H 1.08000 * 120.03259 * 180.27038 * 11 10 9 35 35 H 0.97002 * 120.00002 * 180.02562 * 17 16 14 36 36 H 1.08000 * 120.02754 * 179.97438 * 22 12 11 37 37 H 1.07997 * 119.96094 * 180.02562 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1723 1.1525 0.0000 4 6 3.6793 1.1526 0.0006 5 6 1.4376 2.4252 0.0006 6 8 0.2222 2.4252 0.0006 7 8 2.1115 3.5926 0.0000 8 6 1.3207 4.8103 0.0001 9 6 2.2387 6.0055 0.0001 10 6 2.6545 6.5562 1.1987 11 6 3.5002 7.6479 1.2020 12 6 3.9238 8.2000 0.0001 13 8 4.7499 9.2772 0.0001 14 6 5.2140 9.6926 -1.1956 15 1 4.8618 9.2256 -2.1035 16 6 6.1435 10.7195 -1.2598 17 7 6.5722 11.2887 -0.1539 18 14 6.7871 11.2947 -2.9164 19 1 6.1528 10.4983 -3.9975 20 1 6.4606 12.7313 -3.1027 21 1 8.2599 11.1112 -2.9661 22 6 3.4999 7.6482 -1.2018 23 6 2.6586 6.5530 -1.1984 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3635 0.5138 -0.8899 27 1 2.0469 -0.9353 0.0004 28 1 4.0423 1.1528 1.0285 29 1 4.0429 0.2625 -0.5129 30 1 4.0428 2.0425 -0.5132 31 1 0.6916 4.8350 -0.8897 32 1 0.6921 4.8354 0.8903 33 1 2.3206 6.1296 2.1330 34 1 3.8281 8.0748 2.1384 35 1 7.2222 12.0074 -0.1988 36 1 3.8272 8.0756 -2.1380 37 1 2.3289 6.1232 -2.1328 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000750893445.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:37 Heat of formation + Delta-G solvation = -95.647182 kcal Electronic energy + Delta-G solvation = -20103.174976 eV Core-core repulsion = 16811.001878 eV Total energy + Delta-G solvation = -3292.173098 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.53071 -40.78633 -38.68994 -37.54279 -36.02252 -34.37685 -32.22149 -31.85640 -30.98070 -27.89293 -26.80348 -25.78281 -23.96471 -23.70498 -22.16488 -20.46539 -19.90736 -18.93317 -18.26773 -17.42896 -16.91797 -16.39596 -16.23526 -15.79838 -15.58582 -15.26342 -15.17967 -14.80242 -14.48691 -14.28136 -14.03614 -13.73698 -13.64242 -13.40536 -13.38594 -13.06096 -12.86635 -12.62359 -12.43633 -12.41473 -12.22195 -12.09735 -11.64384 -11.21666 -11.08305 -10.82776 -10.07108 -9.86041 -9.07514 -8.50011 -6.18483 0.18412 0.42928 0.53627 1.35690 1.42690 1.53965 1.90915 1.92060 2.16364 2.81582 3.13231 3.44117 3.70705 3.89663 3.90125 3.90571 4.12755 4.27991 4.30663 4.36651 4.52709 4.59032 4.72223 4.77559 4.83323 4.88650 4.97090 5.06489 5.11068 5.20553 5.24172 5.30790 5.46471 5.52696 5.64049 5.67207 5.67708 5.99228 6.10001 6.77490 6.94574 7.72360 8.72986 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.034269 B = 0.003077 C = 0.003001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.865648 B = 9097.892481 C = 9329.366164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.040 4.040 3 C -0.196 4.196 4 C -0.107 4.107 5 C 0.487 3.513 6 O -0.533 6.533 7 O -0.357 6.357 8 C 0.131 3.869 9 C -0.181 4.181 10 C -0.042 4.042 11 C -0.205 4.205 12 C 0.126 3.874 13 O -0.226 6.226 14 C -0.415 4.415 15 H 0.104 0.896 16 C -0.021 4.021 17 N -0.918 5.918 18 Si 1.020 2.980 19 H -0.251 1.251 20 H -0.268 1.268 21 H -0.268 1.268 22 C -0.244 4.244 23 C -0.044 4.044 24 H 0.083 0.917 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.171 0.829 28 H 0.074 0.926 29 H 0.092 0.908 30 H 0.057 0.943 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.149 0.851 34 H 0.120 0.880 35 H 0.274 0.726 36 H 0.124 0.876 37 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.631 -21.376 -1.665 23.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.058 4.058 3 C -0.197 4.197 4 C -0.163 4.163 5 C 0.336 3.664 6 O -0.426 6.426 7 O -0.274 6.274 8 C 0.058 3.942 9 C -0.182 4.182 10 C -0.060 4.060 11 C -0.224 4.224 12 C 0.075 3.925 13 O -0.132 6.132 14 C -0.491 4.491 15 H 0.121 0.879 16 C -0.219 4.219 17 N -0.556 5.556 18 Si 0.839 3.161 19 H -0.174 1.174 20 H -0.193 1.193 21 H -0.193 1.193 22 C -0.264 4.264 23 C -0.062 4.062 24 H 0.102 0.898 25 H 0.085 0.915 26 H 0.084 0.916 27 H 0.189 0.811 28 H 0.093 0.907 29 H 0.111 0.889 30 H 0.076 0.924 31 H 0.098 0.902 32 H 0.101 0.899 33 H 0.166 0.834 34 H 0.138 0.862 35 H 0.083 0.917 36 H 0.142 0.858 37 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -8.761 -21.017 -1.418 22.814 hybrid contribution 0.326 1.023 -0.441 1.161 sum -8.435 -19.994 -1.859 21.780 Atomic orbital electron populations 1.21123 0.92189 1.02759 1.02618 1.24152 0.97058 0.97363 0.87193 1.21018 0.97825 0.89167 1.11712 1.20711 0.88792 1.03671 1.03159 1.22036 0.86203 0.85617 0.72542 1.90817 1.15725 1.88494 1.47583 1.86712 1.42027 1.14962 1.83696 1.21618 0.90940 0.78303 1.03296 1.19255 1.06382 0.99148 0.93430 1.20889 0.93620 0.93101 0.98369 1.20446 1.05406 1.00904 0.95649 1.19975 0.90184 0.87032 0.95283 1.83948 1.55967 1.39522 1.33745 1.21896 1.24494 1.19146 0.83569 0.87873 1.26612 0.95764 0.95745 1.03781 1.70187 1.30885 1.24671 1.29841 0.84515 0.78255 0.78487 0.74868 1.17394 1.19311 1.19312 1.21243 1.05721 1.01783 0.97611 1.20945 0.93682 0.93313 0.98250 0.89776 0.91546 0.91551 0.81142 0.90728 0.88938 0.92428 0.90185 0.89923 0.83379 0.86187 0.91707 0.85783 0.84236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.99 8.45 71.23 0.60 -1.39 16 2 C -0.04 -0.54 9.95 24.53 0.24 -0.29 16 3 C -0.20 -3.74 6.00 -18.74 -0.11 -3.85 16 4 C -0.11 -1.71 9.84 71.24 0.70 -1.01 16 5 C 0.49 12.67 7.85 70.11 0.55 13.22 16 6 O -0.53 -15.32 12.86 19.71 0.25 -15.06 16 7 O -0.36 -10.18 9.47 -57.04 -0.54 -10.72 16 8 C 0.13 3.63 5.60 71.24 0.40 4.02 16 9 C -0.18 -5.96 5.52 -19.83 -0.11 -6.07 16 10 C -0.04 -1.43 9.69 22.25 0.22 -1.21 16 11 C -0.20 -8.67 9.99 22.39 0.22 -8.45 16 12 C 0.13 6.25 6.65 22.58 0.15 6.40 16 13 O -0.23 -13.47 9.76 -22.65 -0.22 -13.69 16 14 C -0.42 -23.92 9.49 67.92 0.64 -23.27 16 15 H 0.10 5.45 5.20 -2.91 -0.02 5.43 16 16 C -0.02 -1.19 5.49 84.83 0.47 -0.72 16 17 N -0.92 -55.84 13.67 21.61 0.30 -55.54 16 18 Si 1.02 42.32 29.55 68.60 2.03 44.35 16 19 H -0.25 -9.59 7.11 99.48 0.71 -8.89 16 20 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 21 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 22 C -0.24 -10.60 9.17 22.39 0.21 -10.40 16 23 C -0.04 -1.55 9.69 22.25 0.22 -1.33 16 24 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.07 1.26 7.22 -2.39 -0.02 1.24 16 26 H 0.07 1.26 7.22 -2.39 -0.02 1.24 16 27 H 0.17 1.01 8.06 -2.91 -0.02 0.98 16 28 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 29 H 0.09 0.97 8.07 -2.39 -0.02 0.95 16 30 H 0.06 1.15 7.68 -2.39 -0.02 1.14 16 31 H 0.08 2.07 8.08 -2.39 -0.02 2.05 16 32 H 0.08 2.10 8.08 -2.39 -0.02 2.08 16 33 H 0.15 4.02 8.06 -2.91 -0.02 4.00 16 34 H 0.12 4.96 8.06 -2.91 -0.02 4.94 16 35 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 36 H 0.12 5.42 5.64 -2.91 -0.02 5.41 16 37 H 0.14 4.04 8.06 -2.91 -0.02 4.02 16 Total: -1.00 -71.38 324.03 7.29 -64.09 By element: Atomic # 1 Polarization: 19.84 SS G_CDS: 1.08 Total: 20.91 kcal Atomic # 6 Polarization: -38.74 SS G_CDS: 4.40 Total: -34.34 kcal Atomic # 7 Polarization: -55.84 SS G_CDS: 0.30 Total: -55.54 kcal Atomic # 8 Polarization: -38.97 SS G_CDS: -0.51 Total: -39.48 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal Total: -71.38 7.29 -64.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750893445.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.553 kcal (2) G-P(sol) polarization free energy of solvation -71.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds