Wall clock time and date at job start Mon Mar 30 2020 01:42:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 120.00613 * 2 1 4 4 H 1.48496 * 109.47278 * 270.00232 * 3 2 1 5 5 H 1.48502 * 109.46911 * 29.99760 * 3 2 1 6 6 H 1.48494 * 109.47074 * 149.99612 * 3 2 1 7 7 C 1.37879 * 119.99420 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00441 * 0.02562 * 7 2 1 9 9 C 1.50702 * 120.00012 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47098 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.46901 * 180.02562 * 10 9 7 12 12 O 1.42899 * 109.47344 * 180.02562 * 11 10 9 13 13 C 1.34907 * 117.00307 * 180.02562 * 12 11 10 14 14 O 1.21623 * 120.00002 * 359.97438 * 13 12 11 15 15 C 1.46234 * 119.99905 * 180.27741 * 13 12 11 16 16 C 1.34914 * 120.00054 * 172.94160 * 15 13 12 17 17 C 1.47190 * 119.99547 * 349.02824 * 16 15 13 18 18 C 1.39888 * 120.13837 * 136.38326 * 17 16 15 19 19 C 1.37896 * 119.93251 * 179.97438 * 18 17 16 20 20 C 1.38337 * 120.23489 * 0.02562 * 19 18 17 21 21 C 1.38863 * 120.29033 * 359.97438 * 20 19 18 22 22 O 1.35915 * 119.96696 * 180.02562 * 21 20 19 23 23 C 1.38412 * 120.06255 * 359.75207 * 21 20 19 24 24 H 0.97010 * 119.99354 * 0.02562 * 1 2 3 25 25 H 1.09007 * 109.47023 * 60.00081 * 9 7 2 26 26 H 1.09001 * 109.47285 * 299.99960 * 9 7 2 27 27 H 1.08992 * 109.47216 * 60.00521 * 10 9 7 28 28 H 1.08996 * 109.47228 * 299.99419 * 10 9 7 29 29 H 1.08999 * 109.47412 * 60.00127 * 11 10 9 30 30 H 1.09001 * 109.47362 * 299.99915 * 11 10 9 31 31 H 1.08005 * 119.99895 * 352.93361 * 15 13 12 32 32 H 1.07998 * 120.00292 * 169.03782 * 16 15 13 33 33 H 1.07995 * 120.03496 * 359.95706 * 18 17 16 34 34 H 1.08005 * 119.88207 * 180.02562 * 19 18 17 35 35 H 1.07994 * 119.85318 * 180.02562 * 20 19 18 36 36 H 0.96698 * 113.99385 * 90.00567 * 22 21 20 37 37 H 1.07999 * 120.12102 * 180.27164 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4468 2.6526 0.7000 6 1 3.5467 1.4399 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1295 0.0005 9 6 3.5114 -1.1943 0.0011 10 6 4.0213 -2.6368 0.0023 11 6 5.5513 -2.6369 0.0035 12 8 6.0276 -3.9842 0.0040 13 6 7.3650 -4.1611 0.0056 14 8 8.1060 -3.1966 0.0062 15 6 7.9238 -5.5124 0.0001 16 6 9.2534 -5.6920 -0.1419 17 6 10.1113 -4.5610 -0.5307 18 6 11.3345 -4.3526 0.1153 19 6 12.1351 -3.2920 -0.2528 20 6 11.7330 -2.4320 -1.2590 21 6 10.5208 -2.6299 -1.9067 22 8 10.1324 -1.7813 -2.8947 23 6 9.7102 -3.6939 -1.5508 24 1 -0.4850 0.8402 -0.0004 25 1 3.8745 -0.6803 0.8912 26 1 3.8752 -0.6807 -0.8888 27 1 3.6583 -3.1511 -0.8875 28 1 3.6576 -3.1500 0.8925 29 1 5.9140 -2.1227 0.8935 30 1 5.9154 -2.1236 -0.8864 31 1 7.2721 -6.3667 0.1098 32 1 9.6882 -6.6656 0.0296 33 1 11.6512 -5.0216 0.9017 34 1 13.0795 -3.1321 0.2463 35 1 12.3651 -1.6035 -1.5426 36 1 10.4226 -2.0471 -3.7780 37 1 8.7692 -3.8513 -2.0569 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000753464567.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:59 Heat of formation + Delta-G solvation = -86.724070 kcal Electronic energy + Delta-G solvation = -20241.622197 eV Core-core repulsion = 16949.836034 eV Total energy + Delta-G solvation = -3291.786163 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.62418 -39.57225 -37.32425 -36.41371 -34.02425 -33.94801 -31.82398 -30.31311 -29.77457 -27.65487 -24.92909 -23.09092 -22.59875 -21.87183 -20.35884 -19.58336 -18.53012 -17.45210 -16.83387 -16.70476 -16.31146 -15.82087 -15.75899 -15.10969 -14.29796 -14.21722 -14.20514 -13.84261 -13.41546 -12.82281 -12.69797 -12.57856 -12.29041 -12.11442 -11.87937 -11.79391 -11.02881 -10.91529 -10.77720 -10.49506 -10.34833 -10.20799 -9.96327 -9.76085 -9.69145 -9.22249 -8.74078 -8.54572 -8.46908 -6.05139 -4.03875 0.34488 1.15865 1.54196 2.93737 2.97887 3.32230 3.39521 3.44105 3.49356 4.00675 4.41031 4.45365 4.67300 4.80389 4.89377 5.01384 5.09362 5.28470 5.31897 5.51201 5.53495 5.55779 5.63543 5.80737 5.85303 5.94705 6.17106 6.25782 6.28613 6.41446 6.42845 6.60939 6.72687 6.85189 7.24714 7.36004 7.52709 7.75051 7.94880 8.52030 8.99188 9.56727 11.08068 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.023673 B = 0.003495 C = 0.003171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.485830 B = 8009.934640 C = 8827.605821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.067 3.933 3 Si 0.879 3.121 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.521 4.521 8 H 0.074 0.926 9 C -0.011 4.011 10 C -0.100 4.100 11 C 0.065 3.935 12 O -0.347 6.347 13 C 0.477 3.523 14 O -0.495 6.495 15 C -0.179 4.179 16 C -0.022 4.022 17 C -0.064 4.064 18 C -0.106 4.106 19 C -0.117 4.117 20 C -0.133 4.133 21 C 0.095 3.905 22 O -0.495 6.495 23 C -0.069 4.069 24 H 0.264 0.736 25 H 0.019 0.981 26 H 0.015 0.985 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.148 0.852 32 H 0.148 0.852 33 H 0.125 0.875 34 H 0.126 0.874 35 H 0.126 0.874 36 H 0.385 0.615 37 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.939 -12.296 -2.775 28.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.134 4.134 3 Si 0.706 3.294 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.559 4.559 8 H 0.092 0.908 9 C -0.048 4.048 10 C -0.138 4.138 11 C -0.009 4.009 12 O -0.264 6.264 13 C 0.323 3.677 14 O -0.384 6.384 15 C -0.197 4.197 16 C -0.040 4.040 17 C -0.064 4.064 18 C -0.124 4.124 19 C -0.135 4.135 20 C -0.152 4.152 21 C 0.051 3.949 22 O -0.305 6.305 23 C -0.088 4.088 24 H 0.073 0.927 25 H 0.037 0.963 26 H 0.033 0.967 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.166 0.834 32 H 0.165 0.835 33 H 0.143 0.857 34 H 0.144 0.856 35 H 0.144 0.856 36 H 0.241 0.759 37 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 25.686 -11.533 -2.310 28.251 hybrid contribution 0.420 0.907 -0.335 1.054 sum 26.106 -10.626 -2.645 28.309 Atomic orbital electron populations 1.69915 1.06278 1.26948 1.50965 1.25013 0.94758 0.99176 0.94465 0.86785 0.80390 0.83561 0.78635 1.20178 1.21272 1.18979 1.21066 0.89072 0.94653 1.51103 0.90803 1.19523 0.97478 0.91164 0.96667 1.21549 0.88775 1.00736 1.02713 1.23076 0.97078 0.78811 1.01915 1.86192 1.23146 1.33876 1.83164 1.21455 0.81436 0.90775 0.74043 1.90975 1.59602 1.43045 1.44818 1.22441 0.95554 0.94758 1.06987 1.22500 0.92230 0.97961 0.91329 1.18779 0.94707 0.95955 0.96997 1.21188 0.93324 0.98474 0.99405 1.20848 1.00024 0.95090 0.97568 1.21490 0.95768 0.99889 0.98031 1.18266 0.92992 0.90614 0.93011 1.84926 1.78768 1.48943 1.17838 1.21393 0.97931 0.92494 0.96957 0.92667 0.96316 0.96719 0.91605 0.91582 0.91871 0.91841 0.83382 0.83486 0.85679 0.85627 0.85645 0.75950 0.86176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.15 13.96 55.43 0.77 -27.37 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 3 Si 0.88 22.17 27.47 -169.99 -4.67 17.51 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 6 H -0.27 -6.48 6.54 56.52 0.37 -6.11 16 7 C -0.52 -15.12 9.66 -34.44 -0.33 -15.45 16 8 H 0.07 2.28 7.99 -52.48 -0.42 1.86 16 9 C -0.01 -0.27 4.04 -27.88 -0.11 -0.38 16 10 C -0.10 -2.07 5.52 -26.73 -0.15 -2.21 16 11 C 0.06 1.19 5.38 37.16 0.20 1.39 16 12 O -0.35 -5.81 10.12 -41.06 -0.42 -6.22 16 13 C 0.48 7.15 6.92 33.94 0.24 7.39 16 14 O -0.49 -8.59 11.93 -19.36 -0.23 -8.82 16 15 C -0.18 -1.84 10.04 -37.55 -0.38 -2.22 16 16 C -0.02 -0.19 9.81 -37.13 -0.36 -0.55 16 17 C -0.06 -0.70 4.53 -105.08 -0.48 -1.18 16 18 C -0.11 -1.00 9.79 -39.09 -0.38 -1.38 16 19 C -0.12 -1.10 10.02 -39.67 -0.40 -1.49 16 20 C -0.13 -1.42 9.98 -39.31 -0.39 -1.81 16 21 C 0.10 1.18 6.69 -39.29 -0.26 0.92 16 22 O -0.50 -5.90 13.50 -19.47 -0.26 -6.16 16 23 C -0.07 -0.88 6.54 -38.95 -0.25 -1.13 16 24 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 25 H 0.02 0.46 7.20 -51.92 -0.37 0.08 16 26 H 0.01 0.35 7.57 -51.93 -0.39 -0.04 16 27 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 28 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 29 H 0.06 1.17 8.13 -51.93 -0.42 0.75 16 30 H 0.06 1.17 8.13 -51.93 -0.42 0.75 16 31 H 0.15 1.13 8.06 -52.48 -0.42 0.71 16 32 H 0.15 0.68 8.06 -52.49 -0.42 0.26 16 33 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 34 H 0.13 0.84 8.06 -52.48 -0.42 0.42 16 35 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 36 H 0.39 2.42 9.06 45.56 0.41 2.84 16 37 H 0.12 1.60 7.03 -52.49 -0.37 1.23 16 LS Contribution 322.12 15.07 4.85 4.85 Total: -1.00 -35.31 322.12 -7.23 -42.54 By element: Atomic # 1 Polarization: 4.00 SS G_CDS: -4.11 Total: -0.11 kcal Atomic # 6 Polarization: -13.04 SS G_CDS: -3.16 Total: -16.20 kcal Atomic # 7 Polarization: -28.15 SS G_CDS: 0.77 Total: -27.37 kcal Atomic # 8 Polarization: -20.30 SS G_CDS: -0.91 Total: -21.21 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.67 Total: 17.51 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -35.31 -7.23 -42.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753464567.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.188 kcal (2) G-P(sol) polarization free energy of solvation -35.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds