Wall clock time and date at job start Mon Mar 30 2020 01:42:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 120.00613 * 2 1 4 4 H 1.48496 * 109.47278 * 270.00232 * 3 2 1 5 5 H 1.48502 * 109.46911 * 29.99760 * 3 2 1 6 6 H 1.48494 * 109.47074 * 149.99612 * 3 2 1 7 7 C 1.37879 * 119.99420 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00441 * 0.02562 * 7 2 1 9 9 C 1.50702 * 120.00012 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47098 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.46901 * 180.02562 * 10 9 7 12 12 O 1.42899 * 109.47344 * 180.02562 * 11 10 9 13 13 C 1.34907 * 117.00307 * 180.02562 * 12 11 10 14 14 O 1.21623 * 120.00002 * 359.97438 * 13 12 11 15 15 C 1.46234 * 119.99905 * 180.27741 * 13 12 11 16 16 C 1.34914 * 120.00054 * 172.94160 * 15 13 12 17 17 C 1.47190 * 119.99547 * 349.02824 * 16 15 13 18 18 C 1.39888 * 120.13837 * 136.38326 * 17 16 15 19 19 C 1.37896 * 119.93251 * 179.97438 * 18 17 16 20 20 C 1.38337 * 120.23489 * 0.02562 * 19 18 17 21 21 C 1.38863 * 120.29033 * 359.97438 * 20 19 18 22 22 O 1.35915 * 119.96696 * 180.02562 * 21 20 19 23 23 C 1.38412 * 120.06255 * 359.75207 * 21 20 19 24 24 H 0.97010 * 119.99354 * 0.02562 * 1 2 3 25 25 H 1.09007 * 109.47023 * 60.00081 * 9 7 2 26 26 H 1.09001 * 109.47285 * 299.99960 * 9 7 2 27 27 H 1.08992 * 109.47216 * 60.00521 * 10 9 7 28 28 H 1.08996 * 109.47228 * 299.99419 * 10 9 7 29 29 H 1.08999 * 109.47412 * 60.00127 * 11 10 9 30 30 H 1.09001 * 109.47362 * 299.99915 * 11 10 9 31 31 H 1.08005 * 119.99895 * 352.93361 * 15 13 12 32 32 H 1.07998 * 120.00292 * 169.03782 * 16 15 13 33 33 H 1.07995 * 120.03496 * 359.95706 * 18 17 16 34 34 H 1.08005 * 119.88207 * 180.02562 * 19 18 17 35 35 H 1.07994 * 119.85318 * 180.02562 * 20 19 18 36 36 H 0.96698 * 113.99385 * 90.00567 * 22 21 20 37 37 H 1.07999 * 120.12102 * 180.27164 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4468 2.6526 0.7000 6 1 3.5467 1.4399 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1295 0.0005 9 6 3.5114 -1.1943 0.0011 10 6 4.0213 -2.6368 0.0023 11 6 5.5513 -2.6369 0.0035 12 8 6.0276 -3.9842 0.0040 13 6 7.3650 -4.1611 0.0056 14 8 8.1060 -3.1966 0.0062 15 6 7.9238 -5.5124 0.0001 16 6 9.2534 -5.6920 -0.1419 17 6 10.1113 -4.5610 -0.5307 18 6 11.3345 -4.3526 0.1153 19 6 12.1351 -3.2920 -0.2528 20 6 11.7330 -2.4320 -1.2590 21 6 10.5208 -2.6299 -1.9067 22 8 10.1324 -1.7813 -2.8947 23 6 9.7102 -3.6939 -1.5508 24 1 -0.4850 0.8402 -0.0004 25 1 3.8745 -0.6803 0.8912 26 1 3.8752 -0.6807 -0.8888 27 1 3.6583 -3.1511 -0.8875 28 1 3.6576 -3.1500 0.8925 29 1 5.9140 -2.1227 0.8935 30 1 5.9154 -2.1236 -0.8864 31 1 7.2721 -6.3667 0.1098 32 1 9.6882 -6.6656 0.0296 33 1 11.6512 -5.0216 0.9017 34 1 13.0795 -3.1321 0.2463 35 1 12.3651 -1.6035 -1.5426 36 1 10.4226 -2.0471 -3.7780 37 1 8.7692 -3.8513 -2.0569 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000753464567.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:59 Heat of formation + Delta-G solvation = -110.068432 kcal Electronic energy + Delta-G solvation = -20242.634484 eV Core-core repulsion = 16949.836034 eV Total energy + Delta-G solvation = -3292.798451 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.71863 -40.47839 -38.36650 -37.46738 -35.94355 -34.76689 -33.87922 -31.14283 -30.60821 -29.43240 -26.11477 -24.52779 -23.45970 -22.94269 -22.13199 -20.59158 -19.47770 -19.05452 -18.42355 -17.81727 -17.38860 -16.88099 -16.62590 -16.31003 -15.97722 -15.59194 -15.13601 -14.81014 -14.74365 -14.51855 -13.94367 -13.85701 -13.59695 -13.34659 -12.89501 -12.85818 -12.60794 -12.56422 -12.11139 -11.99990 -11.79232 -11.59751 -11.40883 -11.37846 -11.30342 -10.94906 -10.80413 -9.54636 -9.28139 -8.33170 -6.38008 -0.46014 0.36963 0.73768 1.34059 1.35255 1.47407 1.81201 1.95395 2.32932 2.74393 3.01729 3.26582 3.66563 3.81143 3.95010 3.95796 4.03358 4.17521 4.28164 4.34098 4.45340 4.59661 4.67891 4.69702 4.84480 4.91395 4.93648 5.04341 5.19073 5.31955 5.44472 5.45537 5.47365 5.50712 5.56620 5.61137 5.91668 6.22948 6.68593 6.77717 6.83780 7.26495 8.83422 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.023673 B = 0.003495 C = 0.003171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.485830 B = 8009.934640 C = 8827.605821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.007 3.993 3 Si 0.948 3.052 4 H -0.266 1.266 5 H -0.280 1.280 6 H -0.250 1.250 7 C -0.534 4.534 8 H 0.037 0.963 9 C -0.009 4.009 10 C -0.091 4.091 11 C 0.078 3.922 12 O -0.355 6.355 13 C 0.471 3.529 14 O -0.524 6.524 15 C -0.200 4.200 16 C 0.009 3.991 17 C -0.083 4.083 18 C -0.105 4.105 19 C -0.117 4.117 20 C -0.145 4.145 21 C 0.073 3.927 22 O -0.517 6.517 23 C -0.093 4.093 24 H 0.268 0.732 25 H 0.023 0.977 26 H 0.021 0.979 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.177 0.823 32 H 0.198 0.802 33 H 0.159 0.841 34 H 0.156 0.844 35 H 0.138 0.862 36 H 0.405 0.595 37 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.025 -13.019 -2.030 31.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.190 4.190 3 Si 0.771 3.229 4 H -0.191 1.191 5 H -0.205 1.205 6 H -0.174 1.174 7 C -0.572 4.572 8 H 0.055 0.945 9 C -0.046 4.046 10 C -0.128 4.128 11 C 0.004 3.996 12 O -0.272 6.272 13 C 0.319 3.681 14 O -0.416 6.416 15 C -0.218 4.218 16 C -0.009 4.009 17 C -0.083 4.083 18 C -0.123 4.123 19 C -0.135 4.135 20 C -0.163 4.163 21 C 0.029 3.971 22 O -0.329 6.329 23 C -0.112 4.112 24 H 0.077 0.923 25 H 0.041 0.959 26 H 0.039 0.961 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.194 0.806 32 H 0.215 0.785 33 H 0.176 0.824 34 H 0.173 0.827 35 H 0.156 0.844 36 H 0.263 0.737 37 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 28.789 -12.284 -1.580 31.340 hybrid contribution -0.471 1.051 -0.603 1.300 sum 28.318 -11.233 -2.183 30.542 Atomic orbital electron populations 1.70055 1.08173 1.28289 1.52297 1.25972 0.95645 1.03397 0.93987 0.85686 0.79424 0.78417 0.79331 1.19056 1.20512 1.17407 1.21389 0.91542 0.93463 1.50836 0.94451 1.19445 0.94480 0.93767 0.96953 1.21314 0.90618 0.98332 1.02555 1.22660 0.95263 0.80060 1.01663 1.86181 1.24863 1.32391 1.83725 1.22401 0.80277 0.92534 0.72912 1.90970 1.59728 1.44430 1.46437 1.22582 0.96606 0.92777 1.09836 1.23020 0.91095 0.99054 0.87688 1.19156 0.95836 0.96481 0.96807 1.21611 0.92396 0.98776 0.99490 1.21278 1.01058 0.94388 0.96745 1.21737 0.95397 1.00760 0.98418 1.18562 0.93984 0.90885 0.93692 1.84854 1.79341 1.49524 1.19222 1.21412 0.97577 0.93771 0.98424 0.92303 0.95867 0.96066 0.91839 0.91739 0.92016 0.92224 0.80588 0.78506 0.82368 0.82664 0.84414 0.73749 0.88129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.36 13.96 21.45 0.30 -60.06 16 2 C 0.01 0.43 5.47 84.66 0.46 0.89 16 3 Si 0.95 45.51 27.47 68.60 1.88 47.39 16 4 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 5 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 6 H -0.25 -11.34 6.54 99.48 0.65 -10.68 16 7 C -0.53 -31.68 9.66 25.60 0.25 -31.43 16 8 H 0.04 2.41 7.99 -2.91 -0.02 2.39 16 9 C -0.01 -0.44 4.04 29.85 0.12 -0.32 16 10 C -0.09 -3.76 5.52 30.59 0.17 -3.59 16 11 C 0.08 2.86 5.38 71.98 0.39 3.24 16 12 O -0.35 -11.77 10.12 -58.22 -0.59 -12.36 16 13 C 0.47 13.83 6.92 69.90 0.48 14.32 16 14 O -0.52 -18.18 11.93 19.43 0.23 -17.94 16 15 C -0.20 -3.65 10.04 23.58 0.24 -3.41 16 16 C 0.01 0.12 9.81 23.86 0.23 0.36 16 17 C -0.08 -1.63 4.53 -20.16 -0.09 -1.72 16 18 C -0.11 -1.64 9.79 22.59 0.22 -1.42 16 19 C -0.12 -1.86 10.02 22.21 0.22 -1.64 16 20 C -0.14 -2.90 9.98 22.44 0.22 -2.68 16 21 C 0.07 1.81 6.69 22.46 0.15 1.96 16 22 O -0.52 -12.64 13.50 -92.60 -1.25 -13.89 16 23 C -0.09 -2.35 6.54 22.68 0.15 -2.20 16 24 H 0.27 15.85 8.31 -92.70 -0.77 15.08 16 25 H 0.02 1.11 7.20 -2.38 -0.02 1.09 16 26 H 0.02 1.00 7.57 -2.39 -0.02 0.98 16 27 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 28 H 0.06 2.66 8.14 -2.39 -0.02 2.65 16 29 H 0.06 2.27 8.13 -2.39 -0.02 2.25 16 30 H 0.06 2.21 8.13 -2.39 -0.02 2.20 16 31 H 0.18 2.15 8.06 -2.91 -0.02 2.13 16 32 H 0.20 0.69 8.06 -2.91 -0.02 0.67 16 33 H 0.16 1.36 8.06 -2.91 -0.02 1.33 16 34 H 0.16 1.48 8.06 -2.91 -0.02 1.46 16 35 H 0.14 2.28 8.06 -2.91 -0.02 2.25 16 36 H 0.40 5.34 9.06 -74.06 -0.67 4.67 16 37 H 0.10 2.81 7.03 -2.91 -0.02 2.79 16 Total: -1.00 -78.65 322.12 4.14 -74.51 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: 0.35 Total: 10.00 kcal Atomic # 6 Polarization: -30.86 SS G_CDS: 3.22 Total: -27.64 kcal Atomic # 7 Polarization: -60.36 SS G_CDS: 0.30 Total: -60.06 kcal Atomic # 8 Polarization: -42.59 SS G_CDS: -1.61 Total: -44.19 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 1.88 Total: 47.39 kcal Total: -78.65 4.14 -74.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753464567.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.559 kcal (2) G-P(sol) polarization free energy of solvation -78.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds