Wall clock time and date at job start Mon Mar 30 2020 01:27:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.46779 * 2 1 4 4 N 1.46891 * 109.47424 * 239.99705 * 2 1 3 5 5 C 1.46902 * 111.00095 * 84.99879 * 4 2 1 6 6 C 1.53000 * 109.47319 * 179.97438 * 5 4 2 7 7 C 1.50700 * 109.47411 * 180.02562 * 6 5 4 8 8 H 1.08003 * 119.99677 * 359.97438 * 7 6 5 9 9 C 1.37875 * 120.00259 * 180.02562 * 7 6 5 10 10 N 1.31514 * 119.99732 * 179.97438 * 9 7 6 11 11 Si 1.86799 * 120.00024 * 0.02562 * 9 7 6 12 12 H 1.48508 * 109.47052 * 89.99958 * 11 9 7 13 13 H 1.48498 * 109.47293 * 209.99900 * 11 9 7 14 14 H 1.48501 * 109.46899 * 329.99981 * 11 9 7 15 15 C 1.50700 * 109.46918 * 119.99593 * 2 1 3 16 16 N 1.27927 * 124.23958 * 75.04144 * 15 2 1 17 17 C 1.34660 * 117.85046 * 179.67886 * 16 15 2 18 18 C 1.40968 * 129.68912 * 179.56453 * 17 16 15 19 19 C 1.36189 * 120.42402 * 180.41403 * 18 17 16 20 20 C 1.38783 * 120.77595 * 0.28102 * 19 18 17 21 21 C 1.37651 * 120.07425 * 0.02562 * 20 19 18 22 22 C 1.39339 * 119.94981 * 359.97438 * 21 20 19 23 23 S 1.70648 * 124.23787 * 255.00351 * 15 2 1 24 24 H 1.08998 * 109.47339 * 300.00556 * 1 2 3 25 25 H 1.09004 * 109.46594 * 60.00480 * 1 2 3 26 26 H 1.09002 * 109.46779 * 179.97438 * 1 2 3 27 27 H 1.00900 * 111.00325 * 321.04634 * 4 2 1 28 28 H 1.09001 * 109.47454 * 299.99917 * 5 4 2 29 29 H 1.09001 * 109.46935 * 60.00380 * 5 4 2 30 30 H 1.09000 * 109.47343 * 300.00694 * 6 5 4 31 31 H 1.08997 * 109.47141 * 60.00212 * 6 5 4 32 32 H 0.97004 * 119.99923 * 179.97438 * 10 9 7 33 33 H 1.08002 * 119.78991 * 0.69893 * 18 17 16 34 34 H 1.08000 * 119.60866 * 180.30266 * 19 18 17 35 35 H 1.08001 * 119.96298 * 180.02562 * 20 19 18 36 36 H 1.07993 * 120.02521 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1993 5 6 2.0825 0.2225 -2.3468 6 6 2.5964 -0.5330 -3.5741 7 6 2.6614 0.4058 -4.7511 8 1 2.3654 1.4380 -4.6355 9 6 3.0978 -0.0532 -5.9758 10 7 3.1540 0.7661 -7.0030 11 14 3.6078 -1.8390 -6.1763 12 1 2.4277 -2.6494 -6.5716 13 1 4.6524 -1.9406 -7.2268 14 1 4.1484 -2.3467 -4.8898 15 6 2.0323 -0.7103 1.2305 16 7 2.0149 -1.9800 1.3863 17 6 2.5034 -2.4793 2.5375 18 6 2.5979 -3.8177 2.9699 19 6 3.1248 -4.1126 4.1906 20 6 3.5725 -3.1046 5.0330 21 6 3.4869 -1.7882 4.6398 22 6 2.9507 -1.4677 3.3943 23 16 2.6965 0.0781 2.5904 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 1.4497 -1.4980 -1.4099 28 1 1.0872 0.6162 -2.5526 29 1 2.7590 1.0461 -2.1182 30 1 3.5918 -0.9264 -3.3681 31 1 1.9204 -1.3568 -3.8029 32 1 3.4614 0.4432 -7.8646 33 1 2.2544 -4.6148 2.3271 34 1 3.1953 -5.1429 4.5066 35 1 3.9884 -3.3533 5.9982 36 1 3.8352 -1.0045 5.2962 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000753736114.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:31 Heat of formation + Delta-G solvation = 27.286733 kcal Electronic energy + Delta-G solvation = -17951.918305 eV Core-core repulsion = 15140.121643 eV Total energy + Delta-G solvation = -2811.796662 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 276.099 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.35640 -38.93320 -37.27219 -35.23226 -33.22202 -32.06454 -30.60415 -29.67657 -26.58850 -25.70822 -24.18109 -23.22234 -22.33288 -21.06765 -19.53701 -18.96214 -17.51569 -17.10231 -16.36435 -16.30913 -16.10631 -15.91470 -15.45768 -15.20150 -14.78987 -14.69068 -14.28763 -14.00161 -13.46053 -13.37196 -13.15134 -12.91571 -12.83607 -12.64735 -12.35743 -11.99361 -11.85322 -11.80759 -11.70992 -11.43084 -11.11791 -10.77655 -10.60235 -9.63290 -9.36631 -9.10619 -8.30784 -6.34647 -0.56667 0.18437 0.23862 0.70158 1.34948 1.37434 1.38784 1.50564 2.35613 2.72685 2.88203 3.04963 3.26050 3.61799 3.82960 4.01233 4.08623 4.15637 4.31642 4.36689 4.43063 4.51130 4.58945 4.72705 4.79070 4.94034 4.94944 5.09477 5.21355 5.27071 5.28695 5.43309 5.46605 5.62197 5.80806 6.03654 6.23095 6.42495 6.68507 6.73404 7.30326 8.85677 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.026210 B = 0.003660 C = 0.003401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.050812 B = 7647.842038 C = 8229.740493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.154 3.846 3 H 0.106 0.894 4 N -0.684 5.684 5 C 0.089 3.911 6 C -0.004 4.004 7 C -0.530 4.530 8 H 0.038 0.962 9 C 0.008 3.992 10 N -0.949 5.949 11 Si 0.950 3.050 12 H -0.265 1.265 13 H -0.283 1.283 14 H -0.254 1.254 15 C 0.101 3.899 16 N -0.481 5.481 17 C 0.050 3.950 18 C -0.085 4.085 19 C -0.100 4.100 20 C -0.096 4.096 21 C -0.081 4.081 22 C -0.205 4.205 23 S 0.112 5.888 24 H 0.079 0.921 25 H 0.072 0.928 26 H 0.060 0.940 27 H 0.348 0.652 28 H 0.031 0.969 29 H 0.061 0.939 30 H 0.017 0.983 31 H 0.017 0.983 32 H 0.267 0.733 33 H 0.135 0.865 34 H 0.167 0.833 35 H 0.172 0.828 36 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.927 -7.657 28.460 29.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.040 3.960 3 H 0.124 0.876 4 N -0.316 5.316 5 C -0.040 4.040 6 C -0.042 4.042 7 C -0.569 4.569 8 H 0.056 0.944 9 C -0.189 4.189 10 N -0.590 5.590 11 Si 0.773 3.227 12 H -0.190 1.190 13 H -0.208 1.208 14 H -0.178 1.178 15 C -0.185 4.185 16 N -0.195 5.195 17 C -0.070 4.070 18 C -0.106 4.106 19 C -0.121 4.121 20 C -0.117 4.117 21 C -0.103 4.103 22 C -0.324 4.324 23 S 0.370 5.630 24 H 0.098 0.902 25 H 0.091 0.909 26 H 0.079 0.921 27 H 0.167 0.833 28 H 0.049 0.951 29 H 0.080 0.920 30 H 0.035 0.965 31 H 0.035 0.965 32 H 0.076 0.924 33 H 0.153 0.847 34 H 0.184 0.816 35 H 0.190 0.810 36 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -1.272 -6.802 28.201 29.037 hybrid contribution -0.661 -1.101 -1.004 1.630 sum -1.933 -7.904 27.197 28.388 Atomic orbital electron populations 1.22381 0.93379 1.03104 1.03751 1.20236 0.94593 0.96181 0.85017 0.87626 1.60337 1.57859 1.10070 1.03349 1.21705 0.98904 0.94589 0.88766 1.19422 0.96510 0.95618 0.92678 1.21383 1.43702 0.97180 0.94634 0.94380 1.25930 0.95063 1.02496 0.95434 1.70052 1.49163 1.37766 1.01974 0.85665 0.78707 0.79772 0.78524 1.19032 1.20850 1.17795 1.26840 0.99289 0.92011 1.00313 1.66053 1.19242 1.12861 1.21295 1.19668 1.01732 0.96435 0.89166 1.20697 0.99873 0.92312 0.97716 1.21161 0.96628 1.01869 0.92403 1.21615 0.98004 0.90979 1.01127 1.20756 0.98356 0.98765 0.92443 1.24200 1.09718 0.96111 1.02323 1.83638 1.61657 1.07234 1.10508 0.90211 0.90882 0.92118 0.83334 0.95060 0.92023 0.96470 0.96499 0.92420 0.84697 0.81574 0.81047 0.83088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.93 9.14 71.98 0.66 -3.27 16 2 C 0.15 4.32 3.07 44.17 0.14 4.45 16 3 H 0.11 2.78 7.79 -2.39 -0.02 2.76 16 4 N -0.68 -23.60 6.18 -495.45 -3.06 -26.66 16 5 C 0.09 3.53 5.42 86.30 0.47 4.00 16 6 C 0.00 -0.21 4.30 29.85 0.13 -0.08 16 7 C -0.53 -31.00 9.66 25.60 0.25 -30.75 16 8 H 0.04 2.41 7.99 -2.91 -0.02 2.38 16 9 C 0.01 0.47 5.47 84.65 0.46 0.93 16 10 N -0.95 -60.12 13.96 21.45 0.30 -59.82 16 11 Si 0.95 45.74 27.47 68.60 1.88 47.62 16 12 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 13 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 14 H -0.25 -11.78 6.54 99.48 0.65 -11.13 16 15 C 0.10 2.91 6.17 88.68 0.55 3.46 16 16 N -0.48 -15.10 10.50 -182.51 -1.92 -17.02 16 17 C 0.05 1.37 7.00 39.79 0.28 1.65 16 18 C -0.09 -1.83 10.05 22.46 0.23 -1.60 16 19 C -0.10 -1.41 9.94 21.92 0.22 -1.19 16 20 C -0.10 -1.19 10.04 22.26 0.22 -0.96 16 21 C -0.08 -1.35 10.07 22.40 0.23 -1.13 16 22 C -0.20 -4.91 6.56 22.94 0.15 -4.76 16 23 S 0.11 2.67 23.10 -56.49 -1.30 1.36 16 24 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 25 H 0.07 1.72 7.45 -2.38 -0.02 1.71 16 26 H 0.06 1.50 8.13 -2.39 -0.02 1.48 16 27 H 0.35 11.85 8.47 -89.69 -0.76 11.09 16 28 H 0.03 1.20 7.44 -2.39 -0.02 1.18 16 29 H 0.06 2.48 8.06 -2.39 -0.02 2.46 16 30 H 0.02 0.85 7.20 -2.39 -0.02 0.83 16 31 H 0.02 0.79 7.57 -2.39 -0.02 0.77 16 32 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 33 H 0.14 2.69 8.06 -2.91 -0.02 2.67 16 34 H 0.17 1.17 8.06 -2.91 -0.02 1.14 16 35 H 0.17 0.78 8.06 -2.91 -0.02 0.76 16 36 H 0.15 1.75 8.06 -2.91 -0.02 1.73 16 Total: -1.00 -71.61 317.63 0.14 -71.47 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: 0.27 Total: 12.31 kcal Atomic # 6 Polarization: -33.24 SS G_CDS: 3.97 Total: -29.28 kcal Atomic # 7 Polarization: -98.82 SS G_CDS: -4.68 Total: -103.50 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 1.88 Total: 47.62 kcal Atomic # 16 Polarization: 2.67 SS G_CDS: -1.30 Total: 1.36 kcal Total: -71.61 0.14 -71.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753736114.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.760 kcal (2) G-P(sol) polarization free energy of solvation -71.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds