Wall clock time and date at job start Mon Mar 30 2020 01:27:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47524 * 2 1 4 4 N 1.46902 * 109.47083 * 120.00512 * 2 1 3 5 5 C 1.46906 * 110.99573 * 274.99770 * 4 2 1 6 6 C 1.52998 * 109.47020 * 179.97438 * 5 4 2 7 7 C 1.50696 * 109.47332 * 179.97438 * 6 5 4 8 8 H 1.08000 * 119.99871 * 0.02562 * 7 6 5 9 9 C 1.37873 * 120.00534 * 179.97438 * 7 6 5 10 10 N 1.31519 * 119.99727 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00639 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47022 * 89.99777 * 11 9 7 13 13 H 1.48497 * 109.47267 * 210.00472 * 11 9 7 14 14 H 1.48503 * 109.46510 * 330.00340 * 11 9 7 15 15 C 1.50706 * 109.47011 * 240.00069 * 2 1 3 16 16 N 1.27929 * 124.23660 * 105.00510 * 15 2 1 17 17 C 1.34664 * 117.84503 * 179.97438 * 16 15 2 18 18 C 1.40967 * 129.68701 * 179.97438 * 17 16 15 19 19 C 1.36172 * 120.42771 * 179.97438 * 18 17 16 20 20 C 1.38798 * 120.77630 * 0.02850 * 19 18 17 21 21 C 1.37652 * 120.06850 * 0.02562 * 20 19 18 22 22 C 1.39343 * 119.95070 * 359.97438 * 21 20 19 23 23 S 1.70647 * 124.23636 * 284.70131 * 15 2 1 24 24 H 1.09000 * 109.47023 * 299.99973 * 1 2 3 25 25 H 1.09004 * 109.46766 * 59.99858 * 1 2 3 26 26 H 1.09003 * 109.46954 * 179.97438 * 1 2 3 27 27 H 1.00896 * 111.00219 * 38.95409 * 4 2 1 28 28 H 1.09002 * 109.46991 * 299.99841 * 5 4 2 29 29 H 1.09000 * 109.47202 * 60.00133 * 5 4 2 30 30 H 1.08995 * 109.47213 * 300.00679 * 6 5 4 31 31 H 1.09008 * 109.47264 * 60.00068 * 6 5 4 32 32 H 0.97001 * 120.00114 * 179.97438 * 10 9 7 33 33 H 1.08003 * 119.78350 * 0.02562 * 18 17 16 34 34 H 1.07994 * 119.61281 * 180.02562 * 19 18 17 35 35 H 1.07998 * 119.96271 * 179.97438 * 20 19 18 36 36 H 1.07994 * 120.02243 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 2.0825 0.2225 2.3469 6 6 2.5950 -0.5333 3.5744 7 6 2.6600 0.4055 4.7514 8 1 2.3649 1.4379 4.6356 9 6 3.0953 -0.0537 5.9764 10 7 3.4543 -1.3110 6.1176 11 14 3.1753 1.1099 7.4356 12 1 1.8811 1.0810 8.1632 13 1 4.2663 0.6844 8.3488 14 1 3.4420 2.4893 6.9546 15 6 2.0323 -0.7104 -1.2305 16 7 2.5304 -0.1194 -2.2499 17 6 2.9403 -0.8821 -3.2812 18 6 3.5172 -0.5006 -4.5096 19 6 3.8656 -1.4419 -5.4298 20 6 3.6602 -2.7914 -5.1781 21 6 3.0978 -3.1931 -3.9877 22 6 2.7349 -2.2439 -3.0343 23 16 2.0148 -2.4045 -1.4355 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.4496 -1.4980 1.4099 28 1 2.7589 1.0461 2.1182 29 1 1.0871 0.6162 2.5525 30 1 1.9183 -1.3567 3.8029 31 1 3.5904 -0.9274 3.3691 32 1 3.7609 -1.6341 6.9793 33 1 3.6845 0.5451 -4.7219 34 1 4.3070 -1.1349 -6.3664 35 1 3.9411 -3.5268 -5.9174 36 1 2.9379 -4.2433 -3.7929 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000753736145.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:33 Heat of formation + Delta-G solvation = 45.195323 kcal Electronic energy + Delta-G solvation = -17855.915543 eV Core-core repulsion = 15044.895456 eV Total energy + Delta-G solvation = -2811.020087 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 276.099 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.39747 -37.79339 -36.19733 -33.33253 -31.35520 -31.25077 -29.39662 -27.92851 -25.35920 -24.07967 -23.28010 -21.85472 -20.96758 -20.26938 -18.45458 -16.77988 -16.33924 -15.86169 -15.38028 -15.05402 -14.66522 -14.48336 -14.25178 -14.09083 -13.79073 -12.92820 -12.67585 -12.55260 -12.34584 -12.11762 -11.83818 -11.74954 -11.36286 -11.12520 -10.97040 -10.85479 -10.57074 -10.18633 -10.09508 -9.62005 -9.45269 -9.18895 -8.67778 -8.38017 -8.18134 -8.01762 -6.01557 -4.04432 0.38505 1.00928 1.27301 1.81338 2.30387 3.31278 3.37731 3.40986 3.57336 3.72741 4.42224 4.49078 4.68004 4.75645 4.87687 5.06127 5.07247 5.18291 5.26796 5.34648 5.41883 5.70055 5.71184 5.79762 5.99329 6.02139 6.09544 6.20295 6.25301 6.32999 6.55033 6.89637 7.27876 7.63327 7.64973 7.71288 7.85511 8.03264 8.39455 9.02559 9.59575 11.09826 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.035309 B = 0.003208 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.811814 B = 8727.138119 C = 8868.995365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.147 3.853 3 H 0.109 0.891 4 N -0.684 5.684 5 C 0.069 3.931 6 C 0.025 3.975 7 C -0.522 4.522 8 H 0.055 0.945 9 C 0.058 3.942 10 N -0.893 5.893 11 Si 0.893 3.107 12 H -0.281 1.281 13 H -0.286 1.286 14 H -0.274 1.274 15 C 0.127 3.873 16 N -0.479 5.479 17 C 0.089 3.911 18 C -0.069 4.069 19 C -0.110 4.110 20 C -0.112 4.112 21 C -0.068 4.068 22 C -0.197 4.197 23 S 0.127 5.873 24 H 0.075 0.925 25 H 0.063 0.937 26 H 0.061 0.939 27 H 0.341 0.659 28 H 0.063 0.937 29 H 0.023 0.977 30 H 0.015 0.985 31 H 0.026 0.974 32 H 0.261 0.739 33 H 0.132 0.868 34 H 0.132 0.868 35 H 0.132 0.868 36 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.666 -2.904 -22.205 22.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.033 3.967 3 H 0.127 0.873 4 N -0.315 5.315 5 C -0.059 4.059 6 C -0.012 4.012 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.143 4.143 10 N -0.532 5.532 11 Si 0.721 3.279 12 H -0.207 1.207 13 H -0.212 1.212 14 H -0.199 1.199 15 C -0.158 4.158 16 N -0.193 5.193 17 C -0.033 4.033 18 C -0.089 4.089 19 C -0.131 4.131 20 C -0.134 4.134 21 C -0.091 4.091 22 C -0.316 4.316 23 S 0.385 5.615 24 H 0.094 0.906 25 H 0.082 0.918 26 H 0.080 0.920 27 H 0.159 0.841 28 H 0.081 0.919 29 H 0.041 0.959 30 H 0.033 0.967 31 H 0.045 0.955 32 H 0.070 0.930 33 H 0.150 0.850 34 H 0.150 0.850 35 H 0.150 0.850 36 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -3.243 -3.157 -21.506 21.977 hybrid contribution -0.402 0.980 0.317 1.105 sum -3.645 -2.177 -21.189 21.610 Atomic orbital electron populations 1.22508 0.95003 1.02830 1.03319 1.20164 0.92956 0.97935 0.85629 0.87305 1.60593 1.56352 1.10562 1.04040 1.22238 0.98762 0.95102 0.89789 1.19074 0.97143 0.95343 0.89660 1.21145 1.44173 0.96376 0.94426 0.92675 1.24999 0.95320 0.95119 0.98892 1.69972 1.44346 1.14371 1.24471 0.86580 0.77663 0.81189 0.82486 1.20691 1.21191 1.19855 1.26902 0.97110 0.94393 0.97400 1.66171 1.14228 1.38293 1.00597 1.19217 1.01517 0.87638 0.94891 1.20370 0.97689 1.00476 0.90398 1.20681 1.00197 0.92840 0.99356 1.21081 0.99432 0.96232 0.96653 1.20339 0.98293 0.98128 0.92318 1.24046 1.09056 0.98310 1.00166 1.84017 1.60538 1.08186 1.08767 0.90633 0.91750 0.91999 0.84089 0.91891 0.95882 0.96664 0.95544 0.92953 0.85027 0.85040 0.85019 0.85332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.17 9.14 37.16 0.34 -1.83 16 2 C 0.15 2.20 3.08 -68.86 -0.21 1.98 16 3 H 0.11 1.69 7.80 -51.93 -0.40 1.28 16 4 N -0.68 -11.86 6.00 -107.95 -0.65 -12.51 16 5 C 0.07 1.39 5.42 -3.82 -0.02 1.37 16 6 C 0.03 0.65 5.23 -27.89 -0.15 0.50 16 7 C -0.52 -14.64 9.11 -34.44 -0.31 -14.95 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 9 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 10 N -0.89 -26.75 13.29 55.43 0.74 -26.01 16 11 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 14 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 15 C 0.13 1.94 6.23 -13.90 -0.09 1.86 16 16 N -0.48 -7.72 10.57 -9.08 -0.10 -7.81 16 17 C 0.09 1.29 7.00 -84.96 -0.59 0.69 16 18 C -0.07 -0.79 10.05 -39.29 -0.39 -1.19 16 19 C -0.11 -0.98 9.94 -40.12 -0.40 -1.38 16 20 C -0.11 -0.98 10.04 -39.59 -0.40 -1.38 16 21 C -0.07 -0.72 10.07 -39.38 -0.40 -1.12 16 22 C -0.20 -2.65 6.56 -38.54 -0.25 -2.90 16 23 S 0.13 1.74 22.85 -107.50 -2.46 -0.72 16 24 H 0.07 0.92 7.45 -51.93 -0.39 0.54 16 25 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 26 H 0.06 0.70 8.13 -51.93 -0.42 0.28 16 27 H 0.34 5.59 8.47 -39.29 -0.33 5.25 16 28 H 0.06 1.30 8.06 -51.93 -0.42 0.88 16 29 H 0.02 0.44 7.44 -51.93 -0.39 0.06 16 30 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.03 0.73 8.14 -51.92 -0.42 0.31 16 32 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 33 H 0.13 1.32 8.06 -52.48 -0.42 0.90 16 34 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 35 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 36 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 LS Contribution 320.95 15.07 4.84 4.84 Total: -1.00 -31.54 320.95 -10.47 -42.01 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -4.85 Total: 0.44 kcal Atomic # 6 Polarization: -13.80 SS G_CDS: -2.97 Total: -16.77 kcal Atomic # 7 Polarization: -46.33 SS G_CDS: -0.01 Total: -46.33 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: 1.74 SS G_CDS: -2.46 Total: -0.72 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -31.54 -10.47 -42.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753736145.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.205 kcal (2) G-P(sol) polarization free energy of solvation -31.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds