Wall clock time and date at job start Mon Mar 30 2020 01:27:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47524 * 2 1 4 4 N 1.46902 * 109.47083 * 120.00512 * 2 1 3 5 5 C 1.46906 * 110.99573 * 274.99770 * 4 2 1 6 6 C 1.52998 * 109.47020 * 179.97438 * 5 4 2 7 7 C 1.50696 * 109.47332 * 179.97438 * 6 5 4 8 8 H 1.08000 * 119.99871 * 0.02562 * 7 6 5 9 9 C 1.37873 * 120.00534 * 179.97438 * 7 6 5 10 10 N 1.31519 * 119.99727 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00639 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47022 * 89.99777 * 11 9 7 13 13 H 1.48497 * 109.47267 * 210.00472 * 11 9 7 14 14 H 1.48503 * 109.46510 * 330.00340 * 11 9 7 15 15 C 1.50706 * 109.47011 * 240.00069 * 2 1 3 16 16 N 1.27929 * 124.23660 * 105.00510 * 15 2 1 17 17 C 1.34664 * 117.84503 * 179.97438 * 16 15 2 18 18 C 1.40967 * 129.68701 * 179.97438 * 17 16 15 19 19 C 1.36172 * 120.42771 * 179.97438 * 18 17 16 20 20 C 1.38798 * 120.77630 * 0.02850 * 19 18 17 21 21 C 1.37652 * 120.06850 * 0.02562 * 20 19 18 22 22 C 1.39343 * 119.95070 * 359.97438 * 21 20 19 23 23 S 1.70647 * 124.23636 * 284.70131 * 15 2 1 24 24 H 1.09000 * 109.47023 * 299.99973 * 1 2 3 25 25 H 1.09004 * 109.46766 * 59.99858 * 1 2 3 26 26 H 1.09003 * 109.46954 * 179.97438 * 1 2 3 27 27 H 1.00896 * 111.00219 * 38.95409 * 4 2 1 28 28 H 1.09002 * 109.46991 * 299.99841 * 5 4 2 29 29 H 1.09000 * 109.47202 * 60.00133 * 5 4 2 30 30 H 1.08995 * 109.47213 * 300.00679 * 6 5 4 31 31 H 1.09008 * 109.47264 * 60.00068 * 6 5 4 32 32 H 0.97001 * 120.00114 * 179.97438 * 10 9 7 33 33 H 1.08003 * 119.78350 * 0.02562 * 18 17 16 34 34 H 1.07994 * 119.61281 * 180.02562 * 19 18 17 35 35 H 1.07998 * 119.96271 * 179.97438 * 20 19 18 36 36 H 1.07994 * 120.02243 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 2.0825 0.2225 2.3469 6 6 2.5950 -0.5333 3.5744 7 6 2.6600 0.4055 4.7514 8 1 2.3649 1.4379 4.6356 9 6 3.0953 -0.0537 5.9764 10 7 3.4543 -1.3110 6.1176 11 14 3.1753 1.1099 7.4356 12 1 1.8811 1.0810 8.1632 13 1 4.2663 0.6844 8.3488 14 1 3.4420 2.4893 6.9546 15 6 2.0323 -0.7104 -1.2305 16 7 2.5304 -0.1194 -2.2499 17 6 2.9403 -0.8821 -3.2812 18 6 3.5172 -0.5006 -4.5096 19 6 3.8656 -1.4419 -5.4298 20 6 3.6602 -2.7914 -5.1781 21 6 3.0978 -3.1931 -3.9877 22 6 2.7349 -2.2439 -3.0343 23 16 2.0148 -2.4045 -1.4355 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.4496 -1.4980 1.4099 28 1 2.7589 1.0461 2.1182 29 1 1.0871 0.6162 2.5525 30 1 1.9183 -1.3567 3.8029 31 1 3.5904 -0.9274 3.3691 32 1 3.7609 -1.6341 6.9793 33 1 3.6845 0.5451 -4.7219 34 1 4.3070 -1.1349 -6.3664 35 1 3.9411 -3.5268 -5.9174 36 1 2.9379 -4.2433 -3.7929 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000753736145.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:33 Heat of formation + Delta-G solvation = 25.138102 kcal Electronic energy + Delta-G solvation = -17856.785290 eV Core-core repulsion = 15044.895456 eV Total energy + Delta-G solvation = -2811.889833 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 276.099 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.34766 -38.93179 -37.37840 -35.29908 -32.98942 -32.06298 -30.51381 -29.46287 -26.59488 -25.71109 -24.25393 -22.97180 -22.50316 -21.52541 -19.43343 -18.49878 -17.70068 -17.00101 -16.45762 -16.31217 -16.10001 -15.95688 -15.46117 -15.16079 -14.78413 -14.30006 -14.25619 -13.99074 -13.45938 -13.20233 -13.03197 -12.86385 -12.86015 -12.67882 -12.43353 -12.38822 -12.00582 -11.77957 -11.45299 -11.28665 -11.10358 -10.68132 -10.55976 -9.63427 -9.45267 -9.09154 -8.19805 -6.30986 -0.57421 0.18429 0.27984 0.77382 1.33841 1.41200 1.42645 1.53685 2.40104 2.62952 2.73895 3.14076 3.42312 3.61965 3.86681 3.97305 4.08906 4.19140 4.32066 4.36424 4.47558 4.56782 4.64920 4.69482 4.78669 4.93544 5.02867 5.09323 5.17327 5.28359 5.42869 5.44229 5.65353 5.75310 5.81400 6.02820 6.19756 6.39600 6.60344 6.86131 7.38262 8.92361 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.035309 B = 0.003208 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.811814 B = 8727.138119 C = 8868.995365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.152 3.848 3 H 0.099 0.901 4 N -0.691 5.691 5 C 0.089 3.911 6 C 0.032 3.968 7 C -0.543 4.543 8 H 0.062 0.938 9 C 0.001 3.999 10 N -0.931 5.931 11 Si 0.966 3.034 12 H -0.271 1.271 13 H -0.283 1.283 14 H -0.264 1.264 15 C 0.105 3.895 16 N -0.500 5.500 17 C 0.049 3.951 18 C -0.084 4.084 19 C -0.099 4.099 20 C -0.096 4.096 21 C -0.082 4.082 22 C -0.211 4.211 23 S 0.126 5.874 24 H 0.077 0.923 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.345 0.655 28 H 0.058 0.942 29 H 0.036 0.964 30 H -0.004 1.004 31 H -0.008 1.008 32 H 0.264 0.736 33 H 0.139 0.861 34 H 0.170 0.830 35 H 0.173 0.827 36 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.697 -2.784 -24.037 24.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.038 3.962 3 H 0.117 0.883 4 N -0.323 5.323 5 C -0.040 4.040 6 C -0.005 4.005 7 C -0.582 4.582 8 H 0.080 0.920 9 C -0.197 4.197 10 N -0.571 5.571 11 Si 0.790 3.210 12 H -0.196 1.196 13 H -0.209 1.209 14 H -0.188 1.188 15 C -0.180 4.180 16 N -0.214 5.214 17 C -0.071 4.071 18 C -0.105 4.105 19 C -0.119 4.119 20 C -0.117 4.117 21 C -0.105 4.105 22 C -0.330 4.330 23 S 0.383 5.617 24 H 0.095 0.905 25 H 0.093 0.907 26 H 0.089 0.911 27 H 0.164 0.836 28 H 0.076 0.924 29 H 0.054 0.946 30 H 0.015 0.985 31 H 0.010 0.990 32 H 0.072 0.928 33 H 0.157 0.843 34 H 0.187 0.813 35 H 0.190 0.810 36 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -3.286 -3.027 -23.361 23.785 hybrid contribution -0.315 0.858 0.680 1.139 sum -3.601 -2.169 -22.681 23.067 Atomic orbital electron populations 1.22425 0.92868 1.03604 1.03877 1.20102 0.94607 0.97019 0.84456 0.88286 1.60413 1.57526 1.10471 1.03894 1.21818 0.98905 0.94469 0.88775 1.18913 0.94956 0.94967 0.91707 1.21600 1.44045 0.97065 0.95459 0.91952 1.25962 0.94781 0.96819 1.02167 1.70109 1.45246 1.16403 1.25386 0.85433 0.77970 0.79081 0.78468 1.19595 1.20906 1.18794 1.26790 0.98411 0.95272 0.97528 1.66128 1.14413 1.39567 1.01321 1.19631 1.03455 0.88202 0.95792 1.20697 0.98008 1.01787 0.90017 1.21177 0.98356 0.92526 0.99856 1.21628 0.96766 0.97043 0.96272 1.20761 0.98472 0.98731 0.92491 1.24295 1.09666 0.98701 1.00314 1.83816 1.60973 1.07066 1.09821 0.90450 0.90668 0.91144 0.83559 0.92392 0.94586 0.98522 0.98989 0.92770 0.84285 0.81254 0.80988 0.83341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.06 9.14 71.98 0.66 -3.41 16 2 C 0.15 4.62 3.08 44.17 0.14 4.75 16 3 H 0.10 3.16 7.80 -2.39 -0.02 3.14 16 4 N -0.69 -24.63 6.00 -495.43 -2.97 -27.60 16 5 C 0.09 3.66 5.42 86.30 0.47 4.13 16 6 C 0.03 1.70 5.23 29.85 0.16 1.86 16 7 C -0.54 -30.87 9.11 25.60 0.23 -30.63 16 8 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 9 C 0.00 0.04 5.46 84.65 0.46 0.50 16 10 N -0.93 -56.97 13.29 21.45 0.28 -56.69 16 11 Si 0.97 44.30 29.54 68.60 2.03 46.33 16 12 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 13 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 14 H -0.26 -11.57 7.11 99.48 0.71 -10.87 16 15 C 0.10 3.29 6.23 88.68 0.55 3.84 16 16 N -0.50 -16.50 10.57 -182.51 -1.93 -18.43 16 17 C 0.05 1.43 7.00 39.78 0.28 1.71 16 18 C -0.08 -1.83 10.05 22.46 0.23 -1.60 16 19 C -0.10 -1.43 9.94 21.92 0.22 -1.21 16 20 C -0.10 -1.30 10.04 22.27 0.22 -1.07 16 21 C -0.08 -1.56 10.07 22.40 0.23 -1.33 16 22 C -0.21 -5.58 6.56 22.94 0.15 -5.43 16 23 S 0.13 3.49 22.85 -56.49 -1.29 2.20 16 24 H 0.08 1.83 7.45 -2.39 -0.02 1.82 16 25 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 26 H 0.07 1.57 8.13 -2.39 -0.02 1.55 16 27 H 0.35 11.66 8.47 -89.70 -0.76 10.90 16 28 H 0.06 2.44 8.06 -2.39 -0.02 2.42 16 29 H 0.04 1.39 7.44 -2.39 -0.02 1.37 16 30 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 31 H -0.01 -0.49 8.14 -2.38 -0.02 -0.51 16 32 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 33 H 0.14 2.66 8.06 -2.91 -0.02 2.64 16 34 H 0.17 1.15 8.06 -2.91 -0.02 1.13 16 35 H 0.17 0.97 8.06 -2.91 -0.02 0.95 16 36 H 0.15 2.13 8.06 -2.91 -0.02 2.10 16 Total: -1.00 -70.03 320.95 0.43 -69.60 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: 0.32 Total: 12.48 kcal Atomic # 6 Polarization: -31.89 SS G_CDS: 3.99 Total: -27.90 kcal Atomic # 7 Polarization: -98.10 SS G_CDS: -4.62 Total: -102.71 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Atomic # 16 Polarization: 3.49 SS G_CDS: -1.29 Total: 2.20 kcal Total: -70.03 0.43 -69.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753736145.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.736 kcal (2) G-P(sol) polarization free energy of solvation -70.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds