Wall clock time and date at job start Mon Mar 30 2020 01:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 120.00272 * 2 1 4 4 H 1.48489 * 109.47442 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46942 * 300.00495 * 3 2 1 6 6 H 1.48501 * 109.46973 * 59.99736 * 3 2 1 7 7 C 1.37877 * 120.00051 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00264 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00062 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47293 * 179.97438 * 9 7 2 11 11 O 1.45205 * 109.47291 * 180.02562 * 10 9 7 12 12 C 1.34230 * 116.99900 * 180.02562 * 11 10 9 13 13 O 1.20825 * 119.99978 * 359.97438 * 12 11 10 14 14 C 1.50694 * 119.99390 * 179.97438 * 12 11 10 15 15 C 1.50708 * 109.47053 * 179.97438 * 14 12 11 16 16 C 1.38261 * 119.97948 * 270.02600 * 15 14 12 17 17 C 1.38295 * 120.04146 * 179.97438 * 16 15 14 18 18 C 1.37831 * 119.96871 * 359.96675 * 17 16 15 19 19 C 1.38773 * 120.01371 * 0.02562 * 18 17 16 20 20 C 1.37967 * 120.01385 * 0.02562 * 19 18 17 21 21 C 1.51082 * 107.29752 * 180.02562 * 19 18 17 22 22 O 1.43951 * 105.95349 * 342.32532 * 21 19 18 23 23 C 1.43941 * 104.94972 * 28.44560 * 22 21 19 24 24 H 0.97003 * 119.99721 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.47132 * 59.99475 * 9 7 2 26 26 H 1.09003 * 109.47294 * 299.99957 * 9 7 2 27 27 H 1.09004 * 109.47392 * 59.99718 * 10 9 7 28 28 H 1.08996 * 109.46925 * 299.99802 * 10 9 7 29 29 H 1.08995 * 109.47590 * 60.00039 * 14 12 11 30 30 H 1.08998 * 109.47556 * 299.99685 * 14 12 11 31 31 H 1.08005 * 119.97619 * 359.97172 * 16 15 14 32 32 H 1.08004 * 120.04045 * 179.97438 * 17 16 15 33 33 H 1.08001 * 120.03936 * 179.97438 * 20 19 18 34 34 H 1.09005 * 110.15139 * 223.20795 * 21 19 18 35 35 H 1.08990 * 110.15650 * 101.44695 * 21 19 18 36 36 H 1.09002 * 110.15431 * 90.68060 * 23 22 21 37 37 H 1.09004 * 110.15347 * 212.36657 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 8 1.5193 -4.9196 -0.0024 12 6 2.2504 -6.0453 -0.0030 13 8 3.4570 -5.9820 -0.0035 14 6 1.5661 -7.3880 -0.0031 15 6 2.6040 -8.4807 -0.0045 16 6 3.0792 -8.9807 -1.2027 17 6 4.0320 -9.9830 -1.2055 18 6 4.5085 -10.4833 -0.0128 19 6 4.0320 -9.9817 1.1901 20 6 3.0807 -8.9824 1.1928 21 6 4.7403 -10.7247 2.2987 22 8 5.2882 -11.9102 1.6933 23 6 5.5252 -11.5502 0.3199 24 1 -0.4850 0.8401 0.0004 25 1 0.6239 -2.5567 -0.8903 26 1 0.6247 -2.5571 0.8897 27 1 2.8727 -3.6047 0.8877 28 1 2.8712 -3.6039 -0.8923 29 1 0.9430 -7.4782 -0.8928 30 1 0.9438 -7.4787 0.8871 31 1 2.7060 -8.5882 -2.1372 32 1 4.4029 -10.3739 -2.1415 33 1 2.7093 -8.5921 2.1288 34 1 4.0318 -10.9958 3.0814 35 1 5.5400 -10.1099 2.7116 36 1 6.5349 -11.1562 0.2038 37 1 5.3844 -12.4174 -0.3253 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000755117246.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:01 Heat of formation + Delta-G solvation = -111.932699 kcal Electronic energy + Delta-G solvation = -19987.723049 eV Core-core repulsion = 16694.843758 eV Total energy + Delta-G solvation = -3292.879291 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.97153 -39.95297 -37.83877 -36.07665 -33.39831 -33.06116 -31.74387 -30.42025 -29.18157 -27.56343 -25.18525 -24.36982 -21.97676 -21.89386 -20.89434 -20.17447 -17.43348 -16.93565 -16.70082 -16.39833 -16.18788 -16.10474 -15.73508 -15.19521 -14.54476 -14.51349 -14.14098 -13.48861 -13.35622 -13.05027 -12.82250 -12.59426 -12.39137 -12.20384 -12.17121 -11.63150 -11.24498 -11.10015 -11.05508 -10.78699 -10.70624 -10.37117 -10.22178 -9.67643 -9.65752 -9.31288 -9.07073 -8.69671 -8.47255 -6.13053 -4.17405 0.93193 1.12174 2.53958 3.05481 3.25716 3.33225 3.38012 3.59137 3.62939 3.91165 4.33749 4.37609 4.48645 4.66963 4.92406 5.06078 5.08592 5.09563 5.19040 5.23706 5.26624 5.29159 5.36606 5.42961 5.65437 5.81327 6.03170 6.05417 6.06309 6.08070 6.29509 6.41453 6.60932 6.67472 6.97393 7.53460 7.59319 7.84273 8.16064 8.23996 8.88444 9.47256 10.98511 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.041243 B = 0.002720 C = 0.002676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.745233 B =10293.032357 C =10460.485082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.060 3.940 3 Si 0.899 3.101 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.526 4.526 8 H 0.060 0.940 9 C 0.024 3.976 10 C 0.076 3.924 11 O -0.358 6.358 12 C 0.455 3.545 13 O -0.511 6.511 14 C -0.077 4.077 15 C -0.063 4.063 16 C -0.097 4.097 17 C -0.092 4.092 18 C -0.134 4.134 19 C -0.133 4.133 20 C -0.076 4.076 21 C 0.092 3.908 22 O -0.363 6.363 23 C 0.092 3.908 24 H 0.263 0.737 25 H 0.028 0.972 26 H 0.028 0.972 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.130 0.870 32 H 0.126 0.874 33 H 0.127 0.873 34 H 0.098 0.902 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.609 -22.737 0.227 23.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.142 4.142 3 Si 0.727 3.273 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.564 4.564 8 H 0.078 0.922 9 C -0.013 4.013 10 C 0.003 3.997 11 O -0.274 6.274 12 C 0.297 3.703 13 O -0.400 6.400 14 C -0.115 4.115 15 C -0.063 4.063 16 C -0.114 4.114 17 C -0.110 4.110 18 C -0.135 4.135 19 C -0.133 4.133 20 C -0.094 4.094 21 C 0.016 3.984 22 O -0.282 6.282 23 C 0.016 3.984 24 H 0.073 0.927 25 H 0.047 0.953 26 H 0.047 0.953 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.134 0.866 30 H 0.133 0.867 31 H 0.148 0.852 32 H 0.144 0.856 33 H 0.144 0.856 34 H 0.116 0.884 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 5.863 -22.755 0.337 23.500 hybrid contribution 0.499 1.337 -0.148 1.435 sum 6.362 -21.418 0.189 22.344 Atomic orbital electron populations 1.69982 1.06099 1.26905 1.49863 1.24986 0.94921 0.99414 0.94851 0.86417 0.80061 0.83129 0.77726 1.19587 1.20809 1.20802 1.21019 0.93214 0.90119 1.52087 0.92223 1.19177 0.94190 0.89056 0.98878 1.23641 0.96353 0.78751 1.00923 1.86522 1.42439 1.15811 1.82642 1.23336 0.86623 0.87083 0.73231 1.90655 1.15727 1.88258 1.45334 1.20303 0.97075 0.87186 1.06908 1.19292 0.97630 0.96105 0.93311 1.21015 0.96666 0.96026 0.97738 1.20276 0.97026 0.97000 0.96669 1.21030 0.98702 0.99416 0.94313 1.20984 0.98172 0.98335 0.95854 1.20223 0.95781 0.95387 0.97982 1.21747 0.96770 0.85836 0.94095 1.89070 1.83911 1.33254 1.21932 1.21732 0.96597 0.96393 0.83718 0.92740 0.95346 0.95342 0.92347 0.92349 0.86644 0.86711 0.85234 0.85565 0.85552 0.88429 0.90373 0.90503 0.88561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.27 13.29 55.43 0.74 -25.53 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 4 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.53 -14.78 9.11 -34.44 -0.31 -15.09 16 8 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 9 C 0.02 0.63 5.35 -27.88 -0.15 0.48 16 10 C 0.08 1.68 5.40 37.16 0.20 1.88 16 11 O -0.36 -6.97 10.22 -39.26 -0.40 -7.37 16 12 C 0.45 7.61 7.95 36.00 0.29 7.90 16 13 O -0.51 -10.01 15.78 -18.75 -0.30 -10.31 16 14 C -0.08 -0.88 5.94 -29.03 -0.17 -1.05 16 15 C -0.06 -0.74 4.38 -104.59 -0.46 -1.20 16 16 C -0.10 -1.05 9.70 -39.55 -0.38 -1.44 16 17 C -0.09 -0.93 10.03 -39.71 -0.40 -1.32 16 18 C -0.13 -1.43 6.33 -104.38 -0.66 -2.09 16 19 C -0.13 -1.48 6.33 -104.34 -0.66 -2.14 16 20 C -0.08 -0.86 9.70 -39.66 -0.38 -1.25 16 21 C 0.09 0.87 7.63 36.19 0.28 1.14 16 22 O -0.36 -3.87 11.72 -35.23 -0.41 -4.28 16 23 C 0.09 0.82 7.63 36.19 0.28 1.10 16 24 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 25 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.06 1.29 8.13 -51.93 -0.42 0.86 16 28 H 0.06 1.29 8.13 -51.93 -0.42 0.86 16 29 H 0.12 1.05 8.08 -51.93 -0.42 0.63 16 30 H 0.11 1.06 8.09 -51.93 -0.42 0.64 16 31 H 0.13 1.19 8.06 -52.48 -0.42 0.77 16 32 H 0.13 0.95 8.06 -52.48 -0.42 0.53 16 33 H 0.13 1.24 8.06 -52.49 -0.42 0.81 16 34 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 324.33 15.07 4.89 4.89 Total: -1.00 -32.93 324.33 -8.18 -41.11 By element: Atomic # 1 Polarization: 1.68 SS G_CDS: -5.03 Total: -3.35 kcal Atomic # 6 Polarization: -8.83 SS G_CDS: -2.64 Total: -11.47 kcal Atomic # 7 Polarization: -26.27 SS G_CDS: 0.74 Total: -25.53 kcal Atomic # 8 Polarization: -20.85 SS G_CDS: -1.11 Total: -21.96 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -32.93 -8.18 -41.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755117246.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.826 kcal (2) G-P(sol) polarization free energy of solvation -32.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds