Wall clock time and date at job start Mon Mar 30 2020 01:37:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 120.00272 * 2 1 4 4 H 1.48489 * 109.47442 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46942 * 300.00495 * 3 2 1 6 6 H 1.48501 * 109.46973 * 59.99736 * 3 2 1 7 7 C 1.37877 * 120.00051 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00264 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00062 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47293 * 179.97438 * 9 7 2 11 11 O 1.45205 * 109.47291 * 180.02562 * 10 9 7 12 12 C 1.34230 * 116.99900 * 180.02562 * 11 10 9 13 13 O 1.20825 * 119.99978 * 359.97438 * 12 11 10 14 14 C 1.50694 * 119.99390 * 179.97438 * 12 11 10 15 15 C 1.50708 * 109.47053 * 179.97438 * 14 12 11 16 16 C 1.38261 * 119.97948 * 270.02600 * 15 14 12 17 17 C 1.38295 * 120.04146 * 179.97438 * 16 15 14 18 18 C 1.37831 * 119.96871 * 359.96675 * 17 16 15 19 19 C 1.38773 * 120.01371 * 0.02562 * 18 17 16 20 20 C 1.37967 * 120.01385 * 0.02562 * 19 18 17 21 21 C 1.51082 * 107.29752 * 180.02562 * 19 18 17 22 22 O 1.43951 * 105.95349 * 342.32532 * 21 19 18 23 23 C 1.43941 * 104.94972 * 28.44560 * 22 21 19 24 24 H 0.97003 * 119.99721 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.47132 * 59.99475 * 9 7 2 26 26 H 1.09003 * 109.47294 * 299.99957 * 9 7 2 27 27 H 1.09004 * 109.47392 * 59.99718 * 10 9 7 28 28 H 1.08996 * 109.46925 * 299.99802 * 10 9 7 29 29 H 1.08995 * 109.47590 * 60.00039 * 14 12 11 30 30 H 1.08998 * 109.47556 * 299.99685 * 14 12 11 31 31 H 1.08005 * 119.97619 * 359.97172 * 16 15 14 32 32 H 1.08004 * 120.04045 * 179.97438 * 17 16 15 33 33 H 1.08001 * 120.03936 * 179.97438 * 20 19 18 34 34 H 1.09005 * 110.15139 * 223.20795 * 21 19 18 35 35 H 1.08990 * 110.15650 * 101.44695 * 21 19 18 36 36 H 1.09002 * 110.15431 * 90.68060 * 23 22 21 37 37 H 1.09004 * 110.15347 * 212.36657 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 8 1.5193 -4.9196 -0.0024 12 6 2.2504 -6.0453 -0.0030 13 8 3.4570 -5.9820 -0.0035 14 6 1.5661 -7.3880 -0.0031 15 6 2.6040 -8.4807 -0.0045 16 6 3.0792 -8.9807 -1.2027 17 6 4.0320 -9.9830 -1.2055 18 6 4.5085 -10.4833 -0.0128 19 6 4.0320 -9.9817 1.1901 20 6 3.0807 -8.9824 1.1928 21 6 4.7403 -10.7247 2.2987 22 8 5.2882 -11.9102 1.6933 23 6 5.5252 -11.5502 0.3199 24 1 -0.4850 0.8401 0.0004 25 1 0.6239 -2.5567 -0.8903 26 1 0.6247 -2.5571 0.8897 27 1 2.8727 -3.6047 0.8877 28 1 2.8712 -3.6039 -0.8923 29 1 0.9430 -7.4782 -0.8928 30 1 0.9438 -7.4787 0.8871 31 1 2.7060 -8.5882 -2.1372 32 1 4.4029 -10.3739 -2.1415 33 1 2.7093 -8.5921 2.1288 34 1 4.0318 -10.9958 3.0814 35 1 5.5400 -10.1099 2.7116 36 1 6.5349 -11.1562 0.2038 37 1 5.3844 -12.4174 -0.3253 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000755117246.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:00 Heat of formation + Delta-G solvation = -130.809794 kcal Electronic energy + Delta-G solvation = -19988.541622 eV Core-core repulsion = 16694.843758 eV Total energy + Delta-G solvation = -3293.697864 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.84285 -41.25886 -38.72496 -37.56067 -35.45966 -33.99398 -32.51466 -32.34248 -30.11014 -28.41845 -27.00506 -25.32904 -23.34364 -22.72224 -22.48698 -21.29702 -19.01696 -18.15089 -17.84777 -17.62359 -17.33497 -17.25758 -16.91626 -16.46804 -16.14769 -15.34978 -15.18745 -14.76473 -14.44826 -14.39456 -14.13338 -13.61792 -13.48128 -13.33546 -13.08557 -12.97267 -12.95601 -12.60132 -12.59115 -12.38374 -11.89324 -11.82643 -11.53605 -11.48029 -11.35430 -11.05676 -10.62979 -9.86862 -9.49481 -8.28531 -6.41623 0.09948 0.32630 1.20384 1.40471 1.40749 1.54326 1.80247 2.38817 2.68154 2.92824 3.06006 3.14477 3.58712 3.63186 3.90570 3.95451 4.16115 4.22414 4.26382 4.33100 4.39182 4.42866 4.49906 4.56688 4.58037 4.69156 4.73543 4.88178 5.04471 5.24718 5.27174 5.29360 5.45829 5.48271 5.56051 5.67301 5.74412 5.91028 6.05582 6.71021 6.76954 7.28363 8.84270 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.041243 B = 0.002720 C = 0.002676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.745233 B =10293.032357 C =10460.485082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.007 3.993 3 Si 0.973 3.027 4 H -0.263 1.263 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.550 4.550 8 H 0.063 0.937 9 C 0.030 3.970 10 C 0.091 3.909 11 O -0.365 6.365 12 C 0.454 3.546 13 O -0.541 6.541 14 C -0.066 4.066 15 C -0.082 4.082 16 C -0.107 4.107 17 C -0.097 4.097 18 C -0.144 4.144 19 C -0.150 4.150 20 C -0.089 4.089 21 C 0.091 3.909 22 O -0.379 6.379 23 C 0.090 3.910 24 H 0.268 0.732 25 H 0.008 0.992 26 H 0.007 0.993 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.143 0.857 30 H 0.140 0.860 31 H 0.144 0.856 32 H 0.151 0.849 33 H 0.136 0.864 34 H 0.112 0.888 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.332 -23.356 -0.051 24.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.192 4.192 3 Si 0.797 3.203 4 H -0.187 1.187 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.588 4.588 8 H 0.081 0.919 9 C -0.007 4.007 10 C 0.018 3.982 11 O -0.282 6.282 12 C 0.299 3.701 13 O -0.431 6.431 14 C -0.102 4.102 15 C -0.082 4.082 16 C -0.125 4.125 17 C -0.115 4.115 18 C -0.144 4.144 19 C -0.150 4.150 20 C -0.107 4.107 21 C 0.015 3.985 22 O -0.298 6.298 23 C 0.014 3.986 24 H 0.077 0.923 25 H 0.026 0.974 26 H 0.026 0.974 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.161 0.839 30 H 0.158 0.842 31 H 0.162 0.838 32 H 0.169 0.831 33 H 0.154 0.846 34 H 0.130 0.870 35 H 0.102 0.898 36 H 0.105 0.895 37 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 6.586 -23.401 0.059 24.310 hybrid contribution 0.277 1.422 -0.069 1.450 sum 6.862 -21.979 -0.010 23.026 Atomic orbital electron populations 1.70094 1.07777 1.28243 1.50437 1.25951 0.95844 1.03377 0.94074 0.85282 0.78864 0.78128 0.78073 1.18725 1.19996 1.20004 1.21404 0.93644 0.91339 1.52428 0.91869 1.18984 0.94341 0.90587 0.96770 1.23116 0.94993 0.79291 1.00770 1.86517 1.42627 1.15801 1.83236 1.24406 0.86482 0.87611 0.71590 1.90641 1.17220 1.88520 1.46734 1.20435 0.97065 0.83347 1.09387 1.19419 0.98356 0.96560 0.93831 1.21319 0.96801 0.96236 0.98153 1.20597 0.96609 0.96644 0.97646 1.21373 0.98904 0.99702 0.94441 1.21264 0.98387 0.98547 0.96818 1.20445 0.96073 0.95714 0.98487 1.21848 0.97140 0.85551 0.93996 1.89046 1.84076 1.33855 1.22828 1.21896 0.96591 0.96818 0.83286 0.92292 0.97399 0.97429 0.92473 0.92416 0.83931 0.84232 0.83825 0.83137 0.84620 0.86999 0.89833 0.89513 0.86623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.20 13.29 21.45 0.28 -54.91 16 2 C 0.01 0.37 5.46 84.66 0.46 0.83 16 3 Si 0.97 43.50 29.54 68.60 2.03 45.52 16 4 H -0.26 -11.32 7.11 99.48 0.71 -10.62 16 5 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 6 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 7 C -0.55 -31.21 9.11 25.60 0.23 -30.98 16 8 H 0.06 3.45 7.74 -2.91 -0.02 3.43 16 9 C 0.03 1.62 5.35 29.85 0.16 1.78 16 10 C 0.09 4.10 5.40 71.98 0.39 4.49 16 11 O -0.37 -14.15 10.22 -51.42 -0.53 -14.68 16 12 C 0.45 14.82 7.95 71.23 0.57 15.39 16 13 O -0.54 -21.00 15.78 21.97 0.35 -20.65 16 14 C -0.07 -1.37 5.94 29.10 0.17 -1.19 16 15 C -0.08 -1.79 4.38 -19.84 -0.09 -1.88 16 16 C -0.11 -2.16 9.70 22.29 0.22 -1.95 16 17 C -0.10 -1.79 10.03 22.19 0.22 -1.57 16 18 C -0.14 -2.85 6.33 -19.71 -0.12 -2.97 16 19 C -0.15 -3.17 6.33 -19.68 -0.12 -3.30 16 20 C -0.09 -1.94 9.70 22.22 0.22 -1.73 16 21 C 0.09 1.62 7.63 71.36 0.54 2.16 16 22 O -0.38 -7.58 11.72 -148.98 -1.75 -9.32 16 23 C 0.09 1.46 7.63 71.36 0.54 2.00 16 24 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 25 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 26 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 27 H 0.06 2.55 8.13 -2.39 -0.02 2.53 16 28 H 0.06 2.57 8.13 -2.39 -0.02 2.55 16 29 H 0.14 2.22 8.08 -2.39 -0.02 2.20 16 30 H 0.14 2.24 8.09 -2.39 -0.02 2.22 16 31 H 0.14 2.36 8.06 -2.91 -0.02 2.34 16 32 H 0.15 1.90 8.06 -2.91 -0.02 1.88 16 33 H 0.14 2.53 8.06 -2.91 -0.02 2.50 16 34 H 0.11 1.60 8.14 -2.38 -0.02 1.58 16 35 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.12 1.38 8.14 -2.38 -0.02 1.36 16 Total: -1.00 -70.76 324.33 4.84 -65.92 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: 1.06 Total: 7.03 kcal Atomic # 6 Polarization: -22.30 SS G_CDS: 3.39 Total: -18.91 kcal Atomic # 7 Polarization: -55.20 SS G_CDS: 0.28 Total: -54.91 kcal Atomic # 8 Polarization: -42.73 SS G_CDS: -1.92 Total: -44.65 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.52 kcal Total: -70.76 4.84 -65.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755117246.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.893 kcal (2) G-P(sol) polarization free energy of solvation -70.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds