Wall clock time and date at job start Mon Mar 30 2020 02:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21235 * 119.99961 * 2 1 4 4 C 1.47287 * 119.99814 * 180.02562 * 2 1 3 5 5 C 1.39459 * 120.22492 * 353.81349 * 4 2 1 6 6 C 1.38187 * 119.97366 * 180.02562 * 5 4 2 7 7 C 1.38380 * 120.42774 * 0.02562 * 6 5 4 8 8 C 1.38288 * 120.45041 * 359.97438 * 7 6 5 9 9 C 1.39176 * 120.01843 * 0.02562 * 8 7 6 10 10 C 1.47842 * 120.21382 * 180.02562 * 9 8 7 11 11 O 1.21449 * 120.00243 * 125.43365 * 10 9 8 12 12 O 1.34708 * 119.99959 * 305.43781 * 10 9 8 13 13 C 1.45203 * 116.99621 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.46838 * 180.02562 * 13 12 10 15 15 C 1.53002 * 109.47305 * 179.97438 * 14 13 12 16 16 C 1.50699 * 109.47517 * 179.97438 * 15 14 13 17 17 H 1.08005 * 119.99597 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00252 * 180.02562 * 16 15 14 19 19 N 1.31516 * 120.00094 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00065 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47631 * 59.99729 * 20 18 16 22 22 H 1.48496 * 109.47192 * 179.97438 * 20 18 16 23 23 H 1.48505 * 109.47102 * 299.99974 * 20 18 16 24 24 H 1.08996 * 109.47178 * 270.00044 * 1 2 3 25 25 H 1.09010 * 109.46804 * 29.99810 * 1 2 3 26 26 H 1.09000 * 109.47084 * 149.99699 * 1 2 3 27 27 H 1.08009 * 120.01278 * 0.04794 * 5 4 2 28 28 H 1.08001 * 119.78973 * 179.97438 * 6 5 4 29 29 H 1.07993 * 119.77651 * 180.28067 * 7 6 5 30 30 H 1.07996 * 119.99059 * 180.02562 * 8 7 6 31 31 H 1.09005 * 109.47475 * 299.99656 * 13 12 10 32 32 H 1.08997 * 109.47405 * 60.00176 * 13 12 10 33 33 H 1.09009 * 109.47344 * 299.99757 * 14 13 12 34 34 H 1.08998 * 109.47852 * 59.99968 * 14 13 12 35 35 H 1.08996 * 109.47414 * 299.99958 * 15 14 13 36 36 H 1.08997 * 109.47074 * 59.99912 * 15 14 13 37 37 H 0.96993 * 120.00179 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1132 1.0499 0.0000 4 6 2.2435 -1.2756 -0.0006 5 6 1.5569 -2.4826 0.1287 6 6 2.2531 -3.6763 0.1281 7 6 3.6310 -3.6840 0.0002 8 6 4.3294 -2.4975 -0.1291 9 6 3.6471 -1.2845 -0.1308 10 6 4.3894 -0.0134 -0.2693 11 8 4.0901 0.7722 -1.1458 12 8 5.3979 0.2732 0.5765 13 6 6.0826 1.5386 0.3810 14 6 7.1889 1.6868 1.4274 15 6 7.9109 3.0199 1.2211 16 6 9.0002 3.1662 2.2522 17 1 9.1616 2.3861 2.9815 18 6 9.7906 4.2958 2.2645 19 7 9.5943 5.2455 1.3761 20 14 11.1412 4.4767 3.5422 21 1 12.1114 3.3617 3.3984 22 1 11.8419 5.7706 3.3420 23 1 10.5446 4.4415 4.9016 24 1 -0.3633 0.0000 1.0276 25 1 -0.3633 0.8901 -0.5139 26 1 -0.3633 -0.8900 -0.5139 27 1 0.4815 -2.4844 0.2290 28 1 1.7185 -4.6093 0.2288 29 1 4.1640 -4.6232 -0.0035 30 1 5.4047 -2.5121 -0.2288 31 1 6.5210 1.5643 -0.6167 32 1 5.3706 2.3571 0.4862 33 1 6.7510 1.6611 2.4254 34 1 7.9010 0.8683 1.3220 35 1 8.3489 3.0453 0.2233 36 1 7.1992 3.8387 1.3264 37 1 10.1506 6.0400 1.3846 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000757498699.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:50 Heat of formation + Delta-G solvation = -107.605353 kcal Electronic energy + Delta-G solvation = -20311.239015 eV Core-core repulsion = 17018.547371 eV Total energy + Delta-G solvation = -3292.691643 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.82992 -39.30918 -38.34698 -36.19777 -33.92582 -32.47155 -31.96351 -31.39898 -29.64060 -27.13002 -24.82926 -23.87061 -22.95832 -20.99082 -20.30601 -19.98163 -18.00918 -16.97845 -16.62363 -16.38725 -16.00843 -15.52839 -15.18885 -15.09118 -14.63835 -14.44666 -14.31044 -13.74953 -13.24245 -13.02798 -12.59349 -12.35018 -12.33182 -12.11836 -11.97787 -11.82539 -11.76543 -10.91487 -10.66410 -10.57763 -10.33344 -10.27891 -9.84865 -9.64344 -9.46650 -9.43044 -9.38046 -9.13041 -8.34670 -5.99465 -4.02573 0.19934 0.73635 2.15983 2.48256 2.87740 3.34996 3.39019 3.41237 3.42332 3.69582 4.33244 4.45948 4.53667 4.61343 4.78079 4.88679 4.95835 5.06713 5.11670 5.29068 5.36137 5.48569 5.61833 5.67242 5.73231 5.77172 5.91873 5.95852 6.10616 6.34220 6.56273 6.61071 6.91908 7.04402 7.32661 7.65073 7.76962 7.98821 8.02720 8.40317 9.03486 9.61290 11.12026 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.028777 B = 0.003222 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.767421 B = 8689.192189 C = 9266.025518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.375 3.625 3 O -0.420 6.420 4 C -0.127 4.127 5 C -0.080 4.080 6 C -0.113 4.113 7 C -0.094 4.094 8 C -0.086 4.086 9 C -0.051 4.051 10 C 0.502 3.498 11 O -0.478 6.478 12 O -0.353 6.353 13 C 0.070 3.930 14 C -0.108 4.108 15 C 0.024 3.976 16 C -0.522 4.522 17 H 0.057 0.943 18 C 0.057 3.943 19 N -0.895 5.895 20 Si 0.896 3.104 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.276 1.276 24 H 0.098 0.902 25 H 0.090 0.910 26 H 0.085 0.915 27 H 0.141 0.859 28 H 0.135 0.865 29 H 0.137 0.863 30 H 0.141 0.859 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.019 0.981 36 H 0.020 0.980 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.165 -20.365 -3.097 28.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C 0.250 3.750 3 O -0.293 6.293 4 C -0.128 4.128 5 C -0.098 4.098 6 C -0.131 4.131 7 C -0.112 4.112 8 C -0.104 4.104 9 C -0.052 4.052 10 C 0.343 3.657 11 O -0.365 6.365 12 O -0.270 6.270 13 C -0.003 4.003 14 C -0.146 4.146 15 C -0.013 4.013 16 C -0.560 4.560 17 H 0.075 0.925 18 C -0.145 4.145 19 N -0.534 5.534 20 Si 0.723 3.277 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.202 1.202 24 H 0.116 0.884 25 H 0.109 0.891 26 H 0.104 0.896 27 H 0.159 0.841 28 H 0.153 0.847 29 H 0.154 0.846 30 H 0.159 0.841 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.038 0.962 36 H 0.038 0.962 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -18.828 -19.322 -3.418 27.194 hybrid contribution 0.749 0.177 0.553 0.947 sum -18.080 -19.145 -2.865 26.488 Atomic orbital electron populations 1.22193 0.93123 1.05041 1.04769 1.22598 0.91993 0.87600 0.72840 1.90714 1.71444 1.33886 1.33221 1.20572 0.92268 0.96071 1.03866 1.21412 1.00412 0.90875 0.97107 1.21349 0.94470 0.98256 0.99014 1.21401 0.94465 0.98191 0.97160 1.21368 1.00949 0.90763 0.97307 1.19400 0.92494 0.92193 1.01120 1.20885 0.78744 0.85844 0.80236 1.90852 1.64629 1.47744 1.33259 1.86573 1.44207 1.42111 1.54096 1.23517 0.94408 0.81107 1.01280 1.21763 0.94545 1.01655 0.96590 1.19048 0.94851 0.89800 0.97602 1.21144 1.15973 1.03888 1.14988 0.92486 1.25032 0.97635 0.95834 0.95980 1.69960 1.39860 1.08400 1.35158 0.86601 0.81922 0.77261 0.81878 1.20195 1.21271 1.20183 0.88372 0.89133 0.89617 0.84125 0.84722 0.84553 0.84105 0.91556 0.91288 0.92178 0.92205 0.96215 0.96180 0.92849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.39 9.63 36.01 0.35 -1.04 16 2 C 0.37 4.71 7.13 -30.63 -0.22 4.49 16 3 O -0.42 -7.52 13.72 -18.47 -0.25 -7.77 16 4 C -0.13 -1.46 5.89 -104.73 -0.62 -2.08 16 5 C -0.08 -0.58 9.32 -39.15 -0.36 -0.94 16 6 C -0.11 -0.69 10.03 -39.55 -0.40 -1.09 16 7 C -0.09 -0.68 10.03 -39.51 -0.40 -1.08 16 8 C -0.09 -0.90 9.77 -39.22 -0.38 -1.28 16 9 C -0.05 -0.70 5.79 -104.59 -0.61 -1.31 16 10 C 0.50 9.10 6.05 34.66 0.21 9.31 16 11 O -0.48 -10.04 14.49 -27.23 -0.39 -10.44 16 12 O -0.35 -6.72 10.23 -40.52 -0.41 -7.14 16 13 C 0.07 1.43 5.47 37.16 0.20 1.63 16 14 C -0.11 -2.38 5.53 -26.73 -0.15 -2.53 16 15 C 0.02 0.65 4.97 -27.88 -0.14 0.51 16 16 C -0.52 -15.12 9.11 -34.44 -0.31 -15.43 16 17 H 0.06 1.59 7.74 -52.48 -0.41 1.18 16 18 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 19 N -0.89 -27.45 13.29 55.43 0.74 -26.72 16 20 Si 0.90 21.98 29.54 -169.99 -5.02 16.96 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 24 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.09 0.68 8.14 -51.92 -0.42 0.25 16 26 H 0.09 0.37 6.74 -51.93 -0.35 0.02 16 27 H 0.14 0.53 6.53 -52.48 -0.34 0.19 16 28 H 0.13 0.40 8.06 -52.49 -0.42 -0.02 16 29 H 0.14 0.60 8.06 -52.49 -0.42 0.18 16 30 H 0.14 1.35 8.06 -52.49 -0.42 0.92 16 31 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 32 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 33 H 0.06 1.31 8.14 -51.92 -0.42 0.88 16 34 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 325.39 15.07 4.90 4.90 Total: -1.00 -36.23 325.39 -8.25 -44.48 By element: Atomic # 1 Polarization: -0.11 SS G_CDS: -4.88 Total: -5.00 kcal Atomic # 6 Polarization: -6.35 SS G_CDS: -2.92 Total: -9.27 kcal Atomic # 7 Polarization: -27.45 SS G_CDS: 0.74 Total: -26.72 kcal Atomic # 8 Polarization: -24.29 SS G_CDS: -1.06 Total: -25.35 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -36.23 -8.25 -44.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000757498699.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.129 kcal (2) G-P(sol) polarization free energy of solvation -36.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds