Wall clock time and date at job start Mon Mar 30 2020 02:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21235 * 119.99961 * 2 1 4 4 C 1.47287 * 119.99814 * 180.02562 * 2 1 3 5 5 C 1.39459 * 120.22492 * 353.81349 * 4 2 1 6 6 C 1.38187 * 119.97366 * 180.02562 * 5 4 2 7 7 C 1.38380 * 120.42774 * 0.02562 * 6 5 4 8 8 C 1.38288 * 120.45041 * 359.97438 * 7 6 5 9 9 C 1.39176 * 120.01843 * 0.02562 * 8 7 6 10 10 C 1.47842 * 120.21382 * 180.02562 * 9 8 7 11 11 O 1.21449 * 120.00243 * 125.43365 * 10 9 8 12 12 O 1.34708 * 119.99959 * 305.43781 * 10 9 8 13 13 C 1.45203 * 116.99621 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.46838 * 180.02562 * 13 12 10 15 15 C 1.53002 * 109.47305 * 179.97438 * 14 13 12 16 16 C 1.50699 * 109.47517 * 179.97438 * 15 14 13 17 17 H 1.08005 * 119.99597 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00252 * 180.02562 * 16 15 14 19 19 N 1.31516 * 120.00094 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00065 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47631 * 59.99729 * 20 18 16 22 22 H 1.48496 * 109.47192 * 179.97438 * 20 18 16 23 23 H 1.48505 * 109.47102 * 299.99974 * 20 18 16 24 24 H 1.08996 * 109.47178 * 270.00044 * 1 2 3 25 25 H 1.09010 * 109.46804 * 29.99810 * 1 2 3 26 26 H 1.09000 * 109.47084 * 149.99699 * 1 2 3 27 27 H 1.08009 * 120.01278 * 0.04794 * 5 4 2 28 28 H 1.08001 * 119.78973 * 179.97438 * 6 5 4 29 29 H 1.07993 * 119.77651 * 180.28067 * 7 6 5 30 30 H 1.07996 * 119.99059 * 180.02562 * 8 7 6 31 31 H 1.09005 * 109.47475 * 299.99656 * 13 12 10 32 32 H 1.08997 * 109.47405 * 60.00176 * 13 12 10 33 33 H 1.09009 * 109.47344 * 299.99757 * 14 13 12 34 34 H 1.08998 * 109.47852 * 59.99968 * 14 13 12 35 35 H 1.08996 * 109.47414 * 299.99958 * 15 14 13 36 36 H 1.08997 * 109.47074 * 59.99912 * 15 14 13 37 37 H 0.96993 * 120.00179 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1132 1.0499 0.0000 4 6 2.2435 -1.2756 -0.0006 5 6 1.5569 -2.4826 0.1287 6 6 2.2531 -3.6763 0.1281 7 6 3.6310 -3.6840 0.0002 8 6 4.3294 -2.4975 -0.1291 9 6 3.6471 -1.2845 -0.1308 10 6 4.3894 -0.0134 -0.2693 11 8 4.0901 0.7722 -1.1458 12 8 5.3979 0.2732 0.5765 13 6 6.0826 1.5386 0.3810 14 6 7.1889 1.6868 1.4274 15 6 7.9109 3.0199 1.2211 16 6 9.0002 3.1662 2.2522 17 1 9.1616 2.3861 2.9815 18 6 9.7906 4.2958 2.2645 19 7 9.5943 5.2455 1.3761 20 14 11.1412 4.4767 3.5422 21 1 12.1114 3.3617 3.3984 22 1 11.8419 5.7706 3.3420 23 1 10.5446 4.4415 4.9016 24 1 -0.3633 0.0000 1.0276 25 1 -0.3633 0.8901 -0.5139 26 1 -0.3633 -0.8900 -0.5139 27 1 0.4815 -2.4844 0.2290 28 1 1.7185 -4.6093 0.2288 29 1 4.1640 -4.6232 -0.0035 30 1 5.4047 -2.5121 -0.2288 31 1 6.5210 1.5643 -0.6167 32 1 5.3706 2.3571 0.4862 33 1 6.7510 1.6611 2.4254 34 1 7.9010 0.8683 1.3220 35 1 8.3489 3.0453 0.2233 36 1 7.1992 3.8387 1.3264 37 1 10.1506 6.0400 1.3846 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000757498699.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:50 Heat of formation + Delta-G solvation = -129.308751 kcal Electronic energy + Delta-G solvation = -20312.180145 eV Core-core repulsion = 17018.547371 eV Total energy + Delta-G solvation = -3293.632773 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.94748 -40.53370 -39.18668 -37.76748 -35.98093 -33.79650 -33.19365 -32.49413 -30.27574 -29.10264 -26.11314 -24.85213 -24.42762 -22.25280 -22.12694 -20.86001 -19.16977 -18.66910 -18.00852 -17.80508 -17.33121 -16.66651 -16.51341 -16.10248 -15.86759 -15.54947 -15.39163 -14.99636 -14.72017 -14.13361 -14.00163 -13.82430 -13.57996 -13.15110 -13.03697 -12.98515 -12.81049 -12.55980 -12.49613 -12.44139 -12.12551 -11.84914 -11.50345 -11.47745 -11.28307 -10.79266 -10.60047 -10.12599 -10.10489 -8.24132 -6.37000 -0.61192 0.04867 1.15234 1.36880 1.39333 1.43803 1.51494 1.59585 2.39620 2.68467 2.95260 3.09158 3.47413 3.71297 3.89062 3.98419 4.03090 4.07240 4.28049 4.29393 4.31688 4.45857 4.61840 4.63497 4.70886 4.79421 4.91582 4.99866 5.05405 5.16335 5.25620 5.32777 5.37874 5.44451 5.56600 5.75219 5.78224 6.14516 6.45051 6.61760 6.78164 7.32613 8.88314 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.028777 B = 0.003222 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.767421 B = 8689.192189 C = 9266.025518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.366 3.634 3 O -0.495 6.495 4 C -0.153 4.153 5 C -0.061 4.061 6 C -0.095 4.095 7 C -0.084 4.084 8 C -0.097 4.097 9 C -0.094 4.094 10 C 0.498 3.502 11 O -0.519 6.519 12 O -0.355 6.355 13 C 0.080 3.920 14 C -0.090 4.090 15 C 0.027 3.973 16 C -0.546 4.546 17 H 0.067 0.933 18 C -0.003 4.003 19 N -0.935 5.935 20 Si 0.974 3.026 21 H -0.263 1.263 22 H -0.283 1.283 23 H -0.265 1.265 24 H 0.122 0.878 25 H 0.082 0.918 26 H 0.124 0.876 27 H 0.185 0.815 28 H 0.183 0.817 29 H 0.172 0.828 30 H 0.138 0.862 31 H 0.063 0.937 32 H 0.051 0.949 33 H 0.064 0.936 34 H 0.072 0.928 35 H -0.002 1.002 36 H -0.008 1.008 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.640 -24.424 -1.733 32.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.246 3.754 3 O -0.373 6.373 4 C -0.155 4.155 5 C -0.079 4.079 6 C -0.113 4.113 7 C -0.101 4.101 8 C -0.115 4.115 9 C -0.095 4.095 10 C 0.342 3.658 11 O -0.407 6.407 12 O -0.272 6.272 13 C 0.007 3.993 14 C -0.128 4.128 15 C -0.010 4.010 16 C -0.584 4.584 17 H 0.085 0.915 18 C -0.200 4.200 19 N -0.575 5.575 20 Si 0.797 3.203 21 H -0.188 1.188 22 H -0.208 1.208 23 H -0.190 1.190 24 H 0.140 0.860 25 H 0.101 0.899 26 H 0.142 0.858 27 H 0.202 0.798 28 H 0.201 0.799 29 H 0.190 0.810 30 H 0.156 0.844 31 H 0.081 0.919 32 H 0.069 0.931 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.016 0.984 36 H 0.011 0.989 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -20.332 -23.433 -2.051 31.092 hybrid contribution 1.098 1.288 0.088 1.694 sum -19.234 -22.146 -1.963 29.398 Atomic orbital electron populations 1.22251 0.88795 1.06556 1.06626 1.23646 0.94549 0.87110 0.70074 1.90695 1.73200 1.36222 1.37151 1.20795 0.91382 0.97492 1.05782 1.21927 1.02407 0.89232 0.94315 1.21973 0.94024 0.99607 0.95657 1.21859 0.95425 0.97914 0.94943 1.21523 1.01224 0.90941 0.97851 1.19418 0.93622 0.90649 1.05823 1.21898 0.77775 0.87182 0.78939 1.90805 1.65381 1.49702 1.34842 1.86559 1.45000 1.40795 1.54841 1.23129 0.93798 0.81832 1.00586 1.21461 0.94798 0.99410 0.97118 1.18927 0.94411 0.91452 0.96241 1.21579 1.16641 1.04560 1.15608 0.91476 1.26080 1.00405 0.95252 0.98311 1.70109 1.41171 1.09063 1.37140 0.85369 0.78401 0.77618 0.78870 1.18782 1.20784 1.18984 0.85973 0.89938 0.85755 0.79805 0.79937 0.81030 0.84365 0.91854 0.93060 0.91728 0.90913 0.98399 0.98913 0.92586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.28 9.63 71.24 0.69 -1.60 16 2 C 0.37 9.39 7.13 28.07 0.20 9.59 16 3 O -0.50 -19.31 13.72 20.12 0.28 -19.03 16 4 C -0.15 -3.39 5.89 -19.93 -0.12 -3.51 16 5 C -0.06 -0.60 9.32 22.55 0.21 -0.39 16 6 C -0.10 -0.61 10.03 22.29 0.22 -0.39 16 7 C -0.08 -0.86 10.03 22.32 0.22 -0.64 16 8 C -0.10 -1.94 9.77 22.51 0.22 -1.72 16 9 C -0.09 -2.66 5.79 -19.84 -0.11 -2.77 16 10 C 0.50 19.53 6.05 70.36 0.43 19.96 16 11 O -0.52 -23.89 14.49 27.65 0.40 -23.49 16 12 O -0.36 -14.47 10.23 -56.18 -0.57 -15.04 16 13 C 0.08 3.55 5.47 71.98 0.39 3.94 16 14 C -0.09 -4.17 5.53 30.59 0.17 -4.00 16 15 C 0.03 1.52 4.97 29.85 0.15 1.67 16 16 C -0.55 -32.30 9.11 25.60 0.23 -32.07 16 17 H 0.07 3.74 7.74 -2.91 -0.02 3.72 16 18 C 0.00 -0.16 5.46 84.65 0.46 0.30 16 19 N -0.94 -58.97 13.29 21.45 0.28 -58.69 16 20 Si 0.97 45.24 29.54 68.60 2.03 47.26 16 21 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 22 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 23 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 24 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 25 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 26 H 0.12 0.52 6.74 -2.39 -0.02 0.50 16 27 H 0.18 0.15 6.53 -2.91 -0.02 0.13 16 28 H 0.18 -0.42 8.06 -2.91 -0.02 -0.44 16 29 H 0.17 0.57 8.06 -2.91 -0.02 0.55 16 30 H 0.14 2.66 8.06 -2.91 -0.02 2.64 16 31 H 0.06 2.79 8.14 -2.38 -0.02 2.77 16 32 H 0.05 2.42 8.14 -2.39 -0.02 2.40 16 33 H 0.06 2.90 8.14 -2.38 -0.02 2.88 16 34 H 0.07 3.15 8.14 -2.39 -0.02 3.13 16 35 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 36 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 37 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 Total: -1.00 -86.91 325.39 6.84 -80.06 By element: Atomic # 1 Polarization: -0.52 SS G_CDS: 1.07 Total: 0.55 kcal Atomic # 6 Polarization: -14.99 SS G_CDS: 3.36 Total: -11.63 kcal Atomic # 7 Polarization: -58.97 SS G_CDS: 0.28 Total: -58.69 kcal Atomic # 8 Polarization: -57.67 SS G_CDS: 0.10 Total: -57.56 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.26 kcal Total: -86.91 6.84 -80.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000757498699.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.246 kcal (2) G-P(sol) polarization free energy of solvation -86.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds